8-16001127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001127
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001127
    reference: chr 8
allele count: 1
allele frequency: 8.672876446202148e-6
allele num: 115302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-7T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-7T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15886
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: c.980-7T>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-16001131-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001131
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001131
    reference: chr 8
allele count: 1
allele frequency: 8.687795385043092e-6
allele num: 115104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-11C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-11C>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

8-16001138-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001138
    reference: chr 8
allele count: 1
allele frequency: 8.789508842245894e-6
allele num: 113772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-18T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-18T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17152
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7792
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

8-16001138-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001136
    reference: chr 8
allele count: 1
allele frequency: 8.789508842245894e-6
allele num: 113772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-20_980-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-20_980-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-20_1034-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-20_980-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-20_302-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-20_350-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-20_*339-19delAT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-20_980-19delAT
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7792
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: AAT
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

8-16001139-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001139
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001139
    reference: chr 8
allele count: 2
allele frequency: 1.761617869851672e-5
allele num: 113532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-19T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-19T>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-16001139-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001139
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001139
    reference: chr 8
allele count: 1
allele frequency: 8.808089349258358e-6
allele num: 113532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-19T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-19T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

8-16001146-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001146
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001146
    reference: chr 8
allele count: 35
allele frequency: 3.120319520718922e-4
allele num: 112168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-26A>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-26A>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11566
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12789
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12027
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

8-16001168-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16001168
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16001168
    reference: chr 8
allele count: 2
allele frequency: 1.85628631360101e-5
allele num: 107742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.350-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1034-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*339-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.980-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.980-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.980-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.980-48T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.302-48T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7783
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

8-16007691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007691
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007691
    reference: chr 8
allele count: 1242
allele frequency: 2.035731847238158e-2
allele num: 61010
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+49C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+49C>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 1.75e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 2.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 17577
  bin: 1.25e1
  variant carriers: 649
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 22569
  bin: 7.5e0
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 1.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 13781
  bin: 2.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 4.75e1
  variant carriers: 12
num of homozygotes: 23
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

8-16007704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007704
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007704
    reference: chr 8
allele count: 72
allele frequency: 1.02037924095122e-3
allele num: 70562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+36G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+36G>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22695
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19542
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 5316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

8-16007705-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007705
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007705
    reference: chr 8
allele count: 1
allele frequency: 1.379006012466214e-5
allele num: 72516
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+35T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+35T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21300
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

8-16007708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007708
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007708
    reference: chr 8
allele count: 1
allele frequency: 1.293728006623887e-5
allele num: 77296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+32A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+32A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/8-16007710-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007710
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007710
    reference: chr 8
allele count: 10
allele frequency: 1.237899532073977e-4
allele num: 80782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+30G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+30G>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18673
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28627
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

8-16007712-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007712
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007712
    reference: chr 8
allele count: 250
allele frequency: 2.934341181717881e-3
allele num: 85198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+28T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+28T>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16771
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 31489
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15280
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 2
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-16007717-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007717
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007717
    reference: chr 8
allele count: 1
allele frequency: 1.038917863153739e-5
allele num: 96254
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+23C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+23C>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

8-16007722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007722
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007722
    reference: chr 8
allele count: 1
allele frequency: 9.600061440393219e-6
allele num: 104166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+18A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+18A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

8-16007730-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007730
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007730
    reference: chr 8
allele count: 5
allele frequency: 4.48583373705837e-5
allele num: 111462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+10T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+10T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45284
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

8-16007737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007737
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007737
    reference: chr 8
allele count: 1
allele frequency: 8.693082045308344e-6
allele num: 115034
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.979+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.979+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.349+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1033+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.979+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*338+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.979+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.301+3A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
hgvs: c.979+3A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

8-16007745-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007745
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007745
    reference: chr 8
allele count: 1
allele frequency: 8.538397172082857e-6
allele num: 117118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.296G>A
  hgvsp: ENSP00000444414.1:p.Arg99Lys
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.344G>A
  hgvsp: ENSP00000430536.1:p.Arg115Lys
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.974G>A
  hgvsp: ENSP00000262100.3:p.Arg325Lys
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1028G>A
  hgvsp: ENSP00000405453.2:p.Arg343Lys
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.974G>A
  hgvsp: ENSP00000347430.2:p.Arg325Lys
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*333G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.974G>A
  hgvsp: ENSP00000262101.5:p.Arg325Lys
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.974G>A
  hgvsp: ENSP00000371428.4:p.Arg325Lys
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg325Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-16007748-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007748
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007748
    reference: chr 8
allele count: 3
allele frequency: 2.55449591280654e-5
allele num: 117440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.971G>T
  hgvsp: ENSP00000262100.3:p.Gly324Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.341G>T
  hgvsp: ENSP00000430536.1:p.Gly114Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.971G>T
  hgvsp: ENSP00000347430.2:p.Gly324Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.293G>T
  hgvsp: ENSP00000444414.1:p.Gly98Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1025G>T
  hgvsp: ENSP00000405453.2:p.Gly342Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*330G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.971G>T
  hgvsp: ENSP00000262101.5:p.Gly324Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.971G>T
  hgvsp: ENSP00000371428.4:p.Gly324Val
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49280
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly324Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

8-16007748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007748
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007748
    reference: chr 8
allele count: 1
allele frequency: 8.514986376021799e-6
allele num: 117440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.971G>A
  hgvsp: ENSP00000371428.4:p.Gly324Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1025G>A
  hgvsp: ENSP00000405453.2:p.Gly342Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.293G>A
  hgvsp: ENSP00000444414.1:p.Gly98Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.341G>A
  hgvsp: ENSP00000430536.1:p.Gly114Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.971G>A
  hgvsp: ENSP00000262101.5:p.Gly324Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*330G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.971G>A
  hgvsp: ENSP00000347430.2:p.Gly324Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.971G>A
  hgvsp: ENSP00000262100.3:p.Gly324Glu
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly324Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

8-16007749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007749
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007749
    reference: chr 8
allele count: 1
allele frequency: 8.504847763225038e-6
allele num: 117580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.340G>A
  hgvsp: ENSP00000430536.1:p.Gly114Arg
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.970G>A
  hgvsp: ENSP00000262101.5:p.Gly324Arg
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1024G>A
  hgvsp: ENSP00000405453.2:p.Gly342Arg
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.970G>A
  hgvsp: ENSP00000347430.2:p.Gly324Arg
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*329G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.970G>A
  hgvsp: ENSP00000262100.3:p.Gly324Arg
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.970G>A
  hgvsp: ENSP00000371428.4:p.Gly324Arg
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.292G>A
  hgvsp: ENSP00000444414.1:p.Gly98Arg
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly324Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

8-16007756-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007756
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007756
    reference: chr 8
allele count: 1
allele frequency: 8.447372867038351e-6
allele num: 118380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.963A>G
  hgvsp: ENST00000350896.3:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*322A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.963A>G
  hgvsp: ENST00000381998.4:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.285A>G
  hgvsp: ENST00000536385.1:c.285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.333A>G
  hgvsp: ENST00000522672.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.963A>G
  hgvsp: ENST00000262101.5:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.963A>G
  hgvsp: ENST00000355282.2:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1017A>G
  hgvsp: ENST00000445506.2:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly321Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

8-16007757-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007757
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007757
    reference: chr 8
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.284G>C
  hgvsp: ENSP00000444414.1:p.Gly95Ala
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.962G>C
  hgvsp: ENSP00000347430.2:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1016G>C
  hgvsp: ENSP00000405453.2:p.Gly339Ala
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.962G>C
  hgvsp: ENSP00000371428.4:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.332G>C
  hgvsp: ENSP00000430536.1:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.962G>C
  hgvsp: ENSP00000262100.3:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*321G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.962G>C
  hgvsp: ENSP00000262101.5:p.Gly321Ala
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly321Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

8-16007760-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007760
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007760
    reference: chr 8
allele count: 3
allele frequency: 2.528146699925841e-5
allele num: 118664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.959C>A
  hgvsp: ENSP00000262100.3:p.Pro320Gln
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.959C>A
  hgvsp: ENSP00000347430.2:p.Pro320Gln
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.329C>A
  hgvsp: ENSP00000430536.1:p.Pro110Gln
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1013C>A
  hgvsp: ENSP00000405453.2:p.Pro338Gln
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.959C>A
  hgvsp: ENSP00000262101.5:p.Pro320Gln
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*318C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.959C>A
  hgvsp: ENSP00000371428.4:p.Pro320Gln
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.281C>A
  hgvsp: ENSP00000444414.1:p.Pro94Gln
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro320Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

8-16007766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007766
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007766
    reference: chr 8
allele count: 1
allele frequency: 8.40279645065878e-6
allele num: 119008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1007G>A
  hgvsp: ENSP00000405453.2:p.Gly336Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.953G>A
  hgvsp: ENSP00000371428.4:p.Gly318Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.953G>A
  hgvsp: ENSP00000347430.2:p.Gly318Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*312G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.953G>A
  hgvsp: ENSP00000262101.5:p.Gly318Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.323G>A
  hgvsp: ENSP00000430536.1:p.Gly108Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.275G>A
  hgvsp: ENSP00000444414.1:p.Gly92Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.953G>A
  hgvsp: ENSP00000262100.3:p.Gly318Glu
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly318Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

8-16007770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007770
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007770
    reference: chr 8
allele count: 1
allele frequency: 8.390528771123156e-6
allele num: 119182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.949C>T
  hgvsp: ENSP00000262101.5:p.Arg317Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.1003C>T
  hgvsp: ENSP00000405453.2:p.Arg335Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.949C>T
  hgvsp: ENSP00000347430.2:p.Arg317Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.271C>T
  hgvsp: ENSP00000444414.1:p.Arg91Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.949C>T
  hgvsp: ENSP00000371428.4:p.Arg317Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.319C>T
  hgvsp: ENSP00000430536.1:p.Arg107Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.949C>T
  hgvsp: ENSP00000262100.3:p.Arg317Ter
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*308C>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg317Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

8-16007775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007775
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007775
    reference: chr 8
allele count: 4
allele frequency: 3.351936581359881e-5
allele num: 119334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.944G>A
  hgvsp: ENSP00000262101.5:p.Gly315Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.944G>A
  hgvsp: ENSP00000262100.3:p.Gly315Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.998G>A
  hgvsp: ENSP00000405453.2:p.Gly333Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*303G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.314G>A
  hgvsp: ENSP00000430536.1:p.Gly105Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.944G>A
  hgvsp: ENSP00000371428.4:p.Gly315Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.944G>A
  hgvsp: ENSP00000347430.2:p.Gly315Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.266G>A
  hgvsp: ENSP00000444414.1:p.Gly89Glu
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly315Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-16007785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007785
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007785
    reference: chr 8
allele count: 1
allele frequency: 8.364421098415779e-6
allele num: 119554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.934G>A
  hgvsp: ENSP00000262101.5:p.Gly312Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.934G>A
  hgvsp: ENSP00000371428.4:p.Gly312Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.934G>A
  hgvsp: ENSP00000262100.3:p.Gly312Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.988G>A
  hgvsp: ENSP00000405453.2:p.Gly330Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.934G>A
  hgvsp: ENSP00000347430.2:p.Gly312Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.304G>A
  hgvsp: ENSP00000430536.1:p.Gly102Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.256G>A
  hgvsp: ENSP00000444414.1:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*293G>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly312Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

8-16007788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007788
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007788
    reference: chr 8
allele count: 1
allele frequency: 8.36050497450046e-6
allele num: 119610
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.931A>G
  hgvsp: ENSP00000262101.5:p.Ile311Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*290A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.301A>G
  hgvsp: ENSP00000430536.1:p.Ile101Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.931A>G
  hgvsp: ENSP00000262100.3:p.Ile311Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.253A>G
  hgvsp: ENSP00000444414.1:p.Ile85Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.931A>G
  hgvsp: ENSP00000371428.4:p.Ile311Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.931A>G
  hgvsp: ENSP00000347430.2:p.Ile311Val
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.985A>G
  hgvsp: ENSP00000405453.2:p.Ile329Val
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile311Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

8-16007789-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007789
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007789
    reference: chr 8
allele count: 1
allele frequency: 8.360924383799873e-6
allele num: 119604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.984A>T
  hgvsp: ENST00000445506.2:c.984A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.300A>T
  hgvsp: ENST00000522672.1:c.300A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.930A>T
  hgvsp: ENST00000262101.5:c.930A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.252A>T
  hgvsp: ENST00000536385.1:c.252A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.930A>T
  hgvsp: ENST00000350896.3:c.930A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.930A>T
  hgvsp: ENST00000355282.2:c.930A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*289A>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.930A>T
  hgvsp: ENST00000381998.4:c.930A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala310Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

8-16007797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007797
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007797
    reference: chr 8
allele count: 3
allele frequency: 2.508403150554357e-5
allele num: 119598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.244C>T
  hgvsp: ENSP00000444414.1:p.Arg82Trp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.292C>T
  hgvsp: ENSP00000430536.1:p.Arg98Trp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.922C>T
  hgvsp: ENSP00000371428.4:p.Arg308Trp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*281C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.922C>T
  hgvsp: ENSP00000262100.3:p.Arg308Trp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.922C>T
  hgvsp: ENSP00000347430.2:p.Arg308Trp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.976C>T
  hgvsp: ENSP00000405453.2:p.Arg326Trp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.922C>T
  hgvsp: ENSP00000262101.5:p.Arg308Trp
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg308Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/8-16007800-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007800
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007800
    reference: chr 8
allele count: 57
allele frequency: 4.766205097330925e-4
allele num: 119592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.919G>T
  hgvsp: ENSP00000262100.3:p.Asp307Tyr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.289G>T
  hgvsp: ENSP00000430536.1:p.Asp97Tyr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.919G>T
  hgvsp: ENSP00000347430.2:p.Asp307Tyr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.241G>T
  hgvsp: ENSP00000444414.1:p.Asp81Tyr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.919G>T
  hgvsp: ENSP00000262101.5:p.Asp307Tyr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.973G>T
  hgvsp: ENSP00000405453.2:p.Asp325Tyr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*278G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.919G>T
  hgvsp: ENSP00000371428.4:p.Asp307Tyr
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47344
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp307Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

8-16007806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007806
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007806
    reference: chr 8
allele count: 1
allele frequency: 8.370862701109976e-6
allele num: 119462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.913A>G
  hgvsp: ENSP00000262100.3:p.Lys305Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.913A>G
  hgvsp: ENSP00000371428.4:p.Lys305Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.283A>G
  hgvsp: ENSP00000430536.1:p.Lys95Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.913A>G
  hgvsp: ENSP00000262101.5:p.Lys305Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.913A>G
  hgvsp: ENSP00000347430.2:p.Lys305Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*272A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.967A>G
  hgvsp: ENSP00000405453.2:p.Lys323Glu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.235A>G
  hgvsp: ENSP00000444414.1:p.Lys79Glu
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys305Glu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

8-16007810-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007810
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007810
    reference: chr 8
allele count: 1
allele frequency: 8.381386616601851e-6
allele num: 119312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.963T>A
  hgvsp: ENST00000445506.2:c.963T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.909T>A
  hgvsp: ENST00000355282.2:c.909T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.909T>A
  hgvsp: ENST00000381998.4:c.909T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.909T>A
  hgvsp: ENST00000350896.3:c.909T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.279T>A
  hgvsp: ENST00000522672.1:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*268T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.909T>A
  hgvsp: ENST00000262101.5:c.909T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.231T>A
  hgvsp: ENST00000536385.1:c.231T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly303Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

8-16007813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007813
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007813
    reference: chr 8
allele count: 5
allele frequency: 4.191747287939505e-5
allele num: 119282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*265G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.228G>A
  hgvsp: ENST00000536385.1:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.276G>A
  hgvsp: ENST00000522672.1:c.276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.906G>A
  hgvsp: ENST00000355282.2:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.960G>A
  hgvsp: ENST00000445506.2:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.906G>A
  hgvsp: ENST00000381998.4:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.906G>A
  hgvsp: ENST00000262101.5:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.906G>A
  hgvsp: ENST00000350896.3:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46662
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro302Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

8-16007814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007814
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007814
    reference: chr 8
allele count: 15
allele frequency: 1.257924927040354e-4
allele num: 119244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.905C>T
  hgvsp: ENSP00000371428.4:p.Pro302Leu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.959C>T
  hgvsp: ENSP00000405453.2:p.Pro320Leu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.905C>T
  hgvsp: ENSP00000262100.3:p.Pro302Leu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*264C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.275C>T
  hgvsp: ENSP00000430536.1:p.Pro92Leu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.905C>T
  hgvsp: ENSP00000262101.5:p.Pro302Leu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.905C>T
  hgvsp: ENSP00000347430.2:p.Pro302Leu
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.227C>T
  hgvsp: ENSP00000444414.1:p.Pro76Leu
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro302Leu
num of homozygotes: 1
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

8-16007818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007818
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007818
    reference: chr 8
allele count: 4
allele frequency: 3.359594161025348e-5
allele num: 119062
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.901C>T
  hgvsp: ENSP00000262101.5:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*260C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.223C>T
  hgvsp: ENSP00000444414.1:p.Pro75Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.955C>T
  hgvsp: ENSP00000405453.2:p.Pro319Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.901C>T
  hgvsp: ENSP00000262100.3:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.901C>T
  hgvsp: ENSP00000347430.2:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.271C>T
  hgvsp: ENSP00000430536.1:p.Pro91Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.901C>T
  hgvsp: ENSP00000371428.4:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro301Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

8-16007818-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007818
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007818
    reference: chr 8
allele count: 1
allele frequency: 8.39898540256337e-6
allele num: 119062
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.901C>A
  hgvsp: ENSP00000262101.5:p.Pro301Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.901C>A
  hgvsp: ENSP00000347430.2:p.Pro301Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.955C>A
  hgvsp: ENSP00000405453.2:p.Pro319Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.271C>A
  hgvsp: ENSP00000430536.1:p.Pro91Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.223C>A
  hgvsp: ENSP00000444414.1:p.Pro75Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.901C>A
  hgvsp: ENSP00000262100.3:p.Pro301Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.901C>A
  hgvsp: ENSP00000371428.4:p.Pro301Thr
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*260C>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro301Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

8-16007833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007833
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007833
    reference: chr 8
allele count: 1
allele frequency: 8.487955591016347e-6
allele num: 117814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-13G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-13G>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

8-16007834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007834
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007834
    reference: chr 8
allele count: 2
allele frequency: 1.698802344347235e-5
allele num: 117730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-14C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-14C>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43039
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 45756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

8-16007837-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007837
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007836
    reference: chr 8
allele count: 1
allele frequency: 8.519338899301415e-6
allele num: 117380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-18delT
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-18delT
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: GA
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-16007844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007844
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007844
    reference: chr 8
allele count: 5
allele frequency: 4.276428327061238e-5
allele num: 116920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-24T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-24T>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-16007849-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007849
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007849
    reference: chr 8
allele count: 2
allele frequency: 1.71503052754339e-5
allele num: 116616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-29C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-29C>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

8-16007852-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007852
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007852
    reference: chr 8
allele count: 15
allele frequency: 1.288571232217717e-4
allele num: 116408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-32T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-32T>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33128
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

8-16007858-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007858
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007858
    reference: chr 8
allele count: 2
allele frequency: 1.735568745878024e-5
allele num: 115236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-38G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-38G>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

8-16007868-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007868
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007868
    reference: chr 8
allele count: 2
allele frequency: 1.756789993324198e-5
allele num: 113844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-48G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-48G>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

8-16007870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007870
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007870
    reference: chr 8
allele count: 385
allele frequency: 3.389323191774068e-3
allele num: 113592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-50C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-50C>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 1.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26497
  bin: 2.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 2.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 1.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 17040
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6087
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.25e1
  variant carriers: 4
num of homozygotes: 3
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

8-16007870-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007870
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007870
    reference: chr 8
allele count: 2
allele frequency: 1.760687372350165e-5
allele num: 113592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-50C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-50C>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26497
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6087
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

8-16007870-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007870
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007870
    reference: chr 8
allele count: 1
allele frequency: 8.803436861750827e-6
allele num: 113592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-50C>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-50C>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5990
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

8-16007872-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16007872
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16007872
    reference: chr 8
allele count: 1
allele frequency: 8.841889334913084e-6
allele num: 113098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*258-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.953-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.269-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.899-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.899-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.221-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.899-52G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.899-52G>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

8-16012523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012523
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012523
    reference: chr 8
allele count: 22
allele frequency: 1.899827288428325e-4
allele num: 115800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+50A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+50A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14857
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

8-16012527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012527
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012527
    reference: chr 8
allele count: 1
allele frequency: 8.627383314640669e-6
allele num: 115910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+46A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+46A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3641
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/8-16012528-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012528
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012528
    reference: chr 8
allele count: 63
allele frequency: 5.446152250211795e-4
allele num: 115678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+45G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+45G>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7055
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23259
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

8-16012530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012530
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012530
    reference: chr 8
allele count: 2
allele frequency: 1.725774441280525e-5
allele num: 115890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+43A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+43A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12772
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6733
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

8-16012533-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012533
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012533
    reference: chr 8
allele count: 1
allele frequency: 8.615490652192642e-6
allele num: 116070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+40T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+40T>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12998
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4720
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-16012537-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012537
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012537
    reference: chr 8
allele count: 9
allele frequency: 7.748734373385681e-5
allele num: 116148
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+36A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+36A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-16012540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012540
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012540
    reference: chr 8
allele count: 1
allele frequency: 8.604371020478403e-6
allele num: 116220
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+33G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+33G>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

8-16012541-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012541
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012541
    reference: chr 8
allele count: 3
allele frequency: 2.578737450144409e-5
allele num: 116336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+32T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+32T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13791
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

8-16012542-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012542
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012542
    reference: chr 8
allele count: 50
allele frequency: 4.29774798005845e-4
allele num: 116340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+31C>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+31C>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25166
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13922
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

8-16012546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012546
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012546
    reference: chr 8
allele count: 6
allele frequency: 5.13821806597472e-5
allele num: 116772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+27T>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+27T>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-16012552-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012552
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012552
    reference: chr 8
allele count: 1
allele frequency: 8.526166805927391e-6
allele num: 117286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+21T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+21T>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6758
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

8-16012557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012557
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012557
    reference: chr 8
allele count: 1
allele frequency: 8.489540885628905e-6
allele num: 117792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+16C>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+16C>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6760
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/8-16012566-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012566
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012566
    reference: chr 8
allele count: 4
allele frequency: 3.374103753690426e-5
allele num: 118550
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+7T>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+7T>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: c.898+7T>G
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

8-16012569-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012569
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012569
    reference: chr 8
allele count: 1
allele frequency: 8.422471153036301e-6
allele num: 118730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+4T>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+4T>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
hgvs: c.898+4T>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

8-16012570-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012570
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012570
    reference: chr 8
allele count: 46
allele frequency: 3.871923504259116e-4
allele num: 118804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+3A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+3A>G
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15598
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30097
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6794
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
hgvs: c.898+3A>G
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/8-16012572-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012572
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012572
    reference: chr 8
allele count: 2
allele frequency: 1.681859463823203e-5
allele num: 118916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+1G>T
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+1G>T
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30121
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5260
  bin: 6.75e1
  variant carriers: 0
hgvs: c.898+1G>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

8-16012572-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012572
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012572
    reference: chr 8
allele count: 14
allele frequency: 1.177301624676242e-4
allele num: 118916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.952+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*257+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.898+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.220+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.898+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.268+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.898+1G>C
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.898+1G>C
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30121
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
hgvs: c.898+1G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

8-16012574-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012574
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012574
    reference: chr 8
allele count: 2
allele frequency: 1.679656006449879e-5
allele num: 119072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.219A>G
  hgvsp: ENSP00000444414.1:p.Ile73Met
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.897A>G
  hgvsp: ENSP00000371428.4:p.Ile299Met
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.897A>G
  hgvsp: ENSP00000262101.5:p.Ile299Met
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.897A>G
  hgvsp: ENSP00000262100.3:p.Ile299Met
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*256A>G
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.267A>G
  hgvsp: ENSP00000430536.1:p.Ile89Met
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.951A>G
  hgvsp: ENSP00000405453.2:p.Ile317Met
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.897A>G
  hgvsp: ENSP00000347430.2:p.Ile299Met
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6774
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile299Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

8-16012581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012581
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012581
    reference: chr 8
allele count: 1
allele frequency: 8.372264362619514e-6
allele num: 119442
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.890G>A
  hgvsp: ENSP00000262101.5:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.890G>A
  hgvsp: ENSP00000371428.4:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.260G>A
  hgvsp: ENSP00000430536.1:p.Gly87Asp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.944G>A
  hgvsp: ENSP00000405453.2:p.Gly315Asp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*249G>A
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.890G>A
  hgvsp: ENSP00000262100.3:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.212G>A
  hgvsp: ENSP00000444414.1:p.Gly71Asp
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.890G>A
  hgvsp: ENSP00000347430.2:p.Gly297Asp
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6775
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly297Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

8-16012582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 16012582
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 16012582
    reference: chr 8
allele count: 2
allele frequency: 1.673808248527049e-5
allele num: 119488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000405453
  ensembl transcript: ENST00000445506
  gene symbol: MSR1
  hgvsc: ENST00000445506.2:c.943G>A
  hgvsp: ENSP00000405453.2:p.Gly315Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000430536
  ensembl transcript: ENST00000522672
  gene symbol: MSR1
  hgvsc: ENST00000522672.1:c.259G>A
  hgvsp: ENSP00000430536.1:p.Gly87Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262100
  ensembl transcript: ENST00000350896
  gene symbol: MSR1
  hgvsc: ENST00000350896.3:c.889G>A
  hgvsp: ENSP00000262100.3:p.Gly297Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000347430
  ensembl transcript: ENST00000355282
  gene symbol: MSR1
  hgvsc: ENST00000355282.2:c.889G>A
  hgvsp: ENSP00000347430.2:p.Gly297Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000262101
  ensembl transcript: ENST00000262101
  gene symbol: MSR1
  hgvsc: ENST00000262101.5:c.889G>A
  hgvsp: ENSP00000262101.5:p.Gly297Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000371428
  ensembl transcript: ENST00000381998
  gene symbol: MSR1
  hgvsc: ENST00000381998.4:c.889G>A
  hgvsp: ENSP00000371428.4:p.Gly297Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000444414
  ensembl transcript: ENST00000536385
  gene symbol: MSR1
  hgvsc: ENST00000536385.1:c.211G>A
  hgvsp: ENSP00000444414.1:p.Gly71Ser
  variant of: http://identifiers.org/hgnc/7376
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000038945
  ensembl protein: ENSP00000428865
  ensembl transcript: ENST00000519060
  gene symbol: MSR1
  hgvsc: ENST00000519060.2:c.*248G>A
  variant of: http://identifiers.org/hgnc/7376
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30467
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly297Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31831
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5452
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63016
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.799226e6

QD
type: SiteQuality
SIO_000300: 6.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.645999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.909e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.767e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.04887770086008e-4
allele num: 9534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.445e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 1.793186e6

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

VQSLOD
type: SiteQuality
SIO_000300: -3.235e0

GenotypeQuality
all individuals: 330
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614257118873894e-5
allele num: 61948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

FS
type: SiteQuality
SIO_000300: 1.373e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.33e-1

DP
type: SiteQuality
SIO_000300: 1.740583e6

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.062022090059473e-4
allele num: 9416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 1.740583e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

FS
type: SiteQuality
SIO_000300: 1.373e0

QD
type: SiteQuality
SIO_000300: 1.944e1

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7635
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
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GenotypeQuality
all individuals: 2093
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variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26939
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7792
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.428363283147159e-4
allele num: 8236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.211e1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

FS
type: SiteQuality
SIO_000300: 5.675e0

DP
type: SiteQuality
SIO_000300: 1.730306e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 2658
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
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variant carriers: 0

GenotypeQuality
all individuals: 7792
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26939
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.295643414756988e-5
allele num: 15884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61778
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 5.675e0

DP
type: SiteQuality
SIO_000300: 1.730306e6

QD
type: SiteQuality
SIO_000300: 1.211e1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

GenotypeQuality
all individuals: 601
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7818
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 797
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.179245283018868e-3
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.825817053131276e-4
allele num: 10954
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.47297590622965e-3
allele num: 9214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

DP
type: SiteQuality
SIO_000300: 1.667307e6

QD
type: SiteQuality
SIO_000300: 1.503e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 8.46e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5673
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variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
all individuals: 1662
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variant carriers: 0

GenotypeQuality
all individuals: 863
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
all individuals: 410
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GenotypeQuality
all individuals: 1228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
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variant carriers: 0

GenotypeQuality
all individuals: 8238
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.450893781489406e-5
allele num: 57956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15468
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.553461e6

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 6.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 3449
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 1959
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3636
bin: 6.25e1
variant carriers: 38

GenotypeQuality
all individuals: 2213
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5344
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 7744
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 5471
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 53

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 39

GenotypeQuality
all individuals: 1295
bin: 5.25e1
variant carriers: 23

GenotypeQuality
all individuals: 2076
bin: 9.75e1
variant carriers: 1182

GenotypeQuality
all individuals: 620
bin: 7.75e1
variant carriers: 53

Other
type: Population
allele count: 10
allele frequency: 1.953125e-2
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

Latino
type: Population
allele count: 72
allele frequency: 1.098901098901099e-2
allele num: 6552
num of homozygotes: 1

South Asian
type: Population
allele count: 84
allele frequency: 7.926023778071334e-3
allele num: 10598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 46
allele frequency: 1.141439205955335e-2
allele num: 4030
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 6.072026800670017e-3
allele num: 4776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1001
allele frequency: 3.312595141968363e-2
allele num: 30218
num of homozygotes: 22

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.27668e5

GenotypeQuality
all individuals: 19512
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1740
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 650
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 445
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18354
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2211
bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.853224610822832e-4
allele num: 5396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 9.493494164293293e-4
allele num: 35814
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.95873596239227e-3
allele num: 7658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.460207612456748e-3
allele num: 578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.202643171806167e-4
allele num: 4540
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.666374320294685e-3
allele num: 11402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.07763e5

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

QD
type: SiteQuality
SIO_000300: 1.108e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 20705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 879
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.709733362237156e-5
allele num: 36904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.102e0

DP
type: SiteQuality
SIO_000300: 9.28183e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.511e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.35282325425994e-5
allele num: 11972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.84757e5

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 4.777e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.1e-3

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 8.120838070488875e-4
allele num: 12314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.021501e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.424e0

FS
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 246

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.122032224765495e-4
allele num: 44562
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.967359050445104e-3
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.578282828282828e-4
allele num: 12672
num of homozygotes: 0

African
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allele count: 217
allele frequency: 3.318042813455657e-2
allele num: 6540
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 24
allele frequency: 2.677973666592278e-3
allele num: 8962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.691e1

DP
type: SiteQuality
SIO_000300: 1.063846e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.844e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.159828e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -2.103e0

QD
type: SiteQuality
SIO_000300: 2.327e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.758581879572313e-5
allele num: 56864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.222256e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.209e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 8.141466115218029e-5
allele num: 61414
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Latino
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.578083575306148e-5
allele num: 63368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64428
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South Asian
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African
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allele num: 9450
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BaseQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.60546515198035e-4
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.33706e6

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

QD
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SIO_000300: 1.342e1

FS
type: SiteQuality
SIO_000300: 2.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.171e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64582
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.906305664410402e-5
allele num: 11228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
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SIO_000300: -1.013e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 2.868e0

MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.171e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.33706e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546742560168286e-5
allele num: 64652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.79e0

DP
type: SiteQuality
SIO_000300: 1.339222e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
type: SiteQuality
SIO_000300: 1.357e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537137235612395e-5
allele num: 65056
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.347621e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536239899222663e-5
allele num: 65094
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.19e-1

QD
type: SiteQuality
SIO_000300: 1.862e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

DP
type: SiteQuality
SIO_000300: 1.348386e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.600662495399337e-5
allele num: 65208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.351048e6

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529660109523664e-5
allele num: 65374
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.527510463446675e-5
allele num: 65466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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allele count: 4
allele frequency: 4.655493482309125e-4
allele num: 8592
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.92e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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DP
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522348069662648e-5
allele num: 65688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.360267e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.648e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 9.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 1159
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50392
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.607e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.41e-1

DP
type: SiteQuality
SIO_000300: 1.360556e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

GenotypeQuality
all individuals: 4239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521606816798539e-5
allele num: 65720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 3.148e0

QD
type: SiteQuality
SIO_000300: 1.132e1

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.360271e6

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.960159362549801e-5
allele num: 10040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.042472921990994e-5
allele num: 65736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.360812e6

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50190
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 273
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 8.213927169845761e-4
allele num: 65742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.5662100456621e-4
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.36214e6

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

QD
type: SiteQuality
SIO_000300: 1.012e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.831e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 49928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4220
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 669
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variant carriers: 0

GenotypeQuality
all individuals: 1049
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.266e-1

FS
type: SiteQuality
SIO_000300: 4.708e0

DP
type: SiteQuality
SIO_000300: 1.357576e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
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GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.146281499692685e-5
allele num: 16270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.354316e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.609e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

GenotypeQuality
all individuals: 1441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 7.25e1
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GenotypeQuality
all individuals: 1033
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 270
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.0960741282614e-5
allele num: 65616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.145526057030482e-5
allele num: 16272
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.354278e6

VQSLOD
type: SiteQuality
SIO_000300: -5.445e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 4.438e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 9.83e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

GenotypeQuality
all individuals: 4171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49513
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GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 269
bin: 8.75e1
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.799718409010911e-5
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.676880392694899e-4
allele num: 65598
num of homozygotes: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.230466346745417e-4
allele num: 16254
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 1.354211e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

FS
type: SiteQuality
SIO_000300: 2.644e0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.651162790697675e-4
allele num: 8600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.011e-1

MQ
type: SiteQuality
SIO_000300: 5.799e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

FS
type: SiteQuality
SIO_000300: 8.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

DP
type: SiteQuality
SIO_000300: 1.349258e6

QD
type: SiteQuality
SIO_000300: 1.077e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.985e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-5
allele num: 65520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.011e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

DP
type: SiteQuality
SIO_000300: 1.349258e6

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 8.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.985e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542162729011165e-5
allele num: 64844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.986e0

DP
type: SiteQuality
SIO_000300: 1.320671e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.078e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 267
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GenotypeQuality
all individuals: 4019
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.086324496157526e-5
allele num: 64802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

DP
type: SiteQuality
SIO_000300: 1.317631e6

FS
type: SiteQuality
SIO_000300: 4.108e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.152e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547508511296812e-5
allele num: 64620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.77194018714832e-5
allele num: 64334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7653e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 1.27428e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.116138481194104e-5
allele num: 64182
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64094
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African
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East Asian
type: Population
allele count: 15
allele frequency: 1.789976133651551e-3
allele num: 8380
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.236943e6

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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South Asian
type: Population
allele count: 2
allele frequency: 1.27177921912756e-4
allele num: 15726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.20962e6

FS
type: SiteQuality
SIO_000300: 1.662e0

VQSLOD
type: SiteQuality
SIO_000300: -1.391e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.193051919024204e-5
allele num: 62636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.064e0

DP
type: SiteQuality
SIO_000300: 1.201231e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 377

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.653499908138894e-3
allele num: 10886
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.369668246445498e-3
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.002048524422253e-5
allele num: 62484
num of homozygotes: 0

African
type: Population
allele count: 360
allele frequency: 3.886849492550205e-2
allele num: 9262
num of homozygotes: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.207261e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e0

QD
type: SiteQuality
SIO_000300: 1.383e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.159360829194558e-4
allele num: 9262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.383e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.207261e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.418485237483954e-5
allele num: 15580
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.383e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

DP
type: SiteQuality
SIO_000300: 1.207261e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2014
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62208
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.23395853899309e-4
allele num: 8104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.318e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.052e0

DP
type: SiteQuality
SIO_000300: 1.214775e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.945525291828794e-3
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.326711375427053e-5
allele num: 15806
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.18105031215571e-5
allele num: 10892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56931671950033e-5
allele num: 63722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.497e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.321911746112024e-5
allele num: 15818
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10912
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.31e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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num of homozygotes: 0

Other
type: Population
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African
type: Population
allele count: 4
allele frequency: 4.095842719639566e-4
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.134796238244514e-4
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 8.800326869283716e-4
allele num: 63634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.184423218221895e-5
allele num: 10888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 8348
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MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.293e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.521089e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 878
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
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Latino
type: Population
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East Asian
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.136566087447463e-5
allele num: 63764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -1.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.053e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.528933e6

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
all individuals: 877
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6738
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variant carriers: 1

GenotypeQuality
all individuals: 879
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565533220614941e-5
allele num: 63876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.787e1

DP
type: SiteQuality
SIO_000300: 1.542205e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e0

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 6744
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 593
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2692
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.680383741479424e-4
allele num: 15844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

QD
type: SiteQuality
SIO_000300: 1.451e1

DP
type: SiteQuality
SIO_000300: 1.559942e6

GenotypeQuality
all individuals: 964
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6743
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563428285544542e-5
allele num: 63962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 1.576548e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.054e0

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

GenotypeQuality
all individuals: 1980
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
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variant carriers: 0

GenotypeQuality
all individuals: 1788
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variant carriers: 0

GenotypeQuality
all individuals: 32701
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variant carriers: 0

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.685303763860691e-5
allele num: 64030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 2.626e0

DP
type: SiteQuality
SIO_000300: 1.580643e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

GenotypeQuality
all individuals: 6778
bin: 9.75e1
variant carriers: 50

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1777
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GenotypeQuality
all individuals: 1872
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 47
allele frequency: 2.961562696912413e-3
allele num: 15870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.298850574712644e-3
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561914282144196e-5
allele num: 64024
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.632e0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.386e1

DP
type: SiteQuality
SIO_000300: 1.585881e6

GenotypeQuality
all individuals: 35164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
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GenotypeQuality
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GenotypeQuality
all individuals: 1420
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.288329519450801e-3
allele num: 874
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.664469183406928e-5
allele num: 64316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.105809506465124e-5
allele num: 10982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.268e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
SIO_000300: 1.805e1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 1.606112e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
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GenotypeQuality
all individuals: 735
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1818
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 36689
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variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.01010101010101e-4
allele num: 9900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6051e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.226e0

DP
type: SiteQuality
SIO_000300: 1.627017e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e0

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.954e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.211e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.640608e6

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.813e0

QD
type: SiteQuality
SIO_000300: 5.99e0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6763
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variant carriers: 4

GenotypeQuality
all individuals: 185
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39484
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GenotypeQuality
all individuals: 674
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.981514609421586e-4
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 1.657525e6

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.211951795254069e-5
allele num: 16098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65526
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.284e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.379e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.124e1

FS
type: SiteQuality
SIO_000300: 3.392e0

DP
type: SiteQuality
SIO_000300: 1.661438e6

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.904912836767037e-5
allele num: 10096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

South Asian
type: Population
allele count: 45
allele frequency: 2.792949354518372e-3
allele num: 16112
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.266e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 1.663565e6

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

GenotypeQuality
all individuals: 1197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
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GenotypeQuality
all individuals: 39782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6785
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1472
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047479734259767e-5
allele num: 65628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.177e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.665534e6

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6785
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
all individuals: 216
bin: 5.25e1
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GenotypeQuality
all individuals: 678
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.571219601389651e-5
allele num: 65628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.863701578192252e-4
allele num: 11152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

DP
type: SiteQuality
SIO_000300: 1.665534e6

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 1484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 40155
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1847
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variant carriers: 0

GenotypeQuality
all individuals: 5282
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GenotypeQuality
all individuals: 137
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044047365377005e-5
allele num: 65702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 1.668142e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 5304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.925383791503035e-5
allele num: 11204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65874
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.674163e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0