5-176730163-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730163
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730163
    reference: chr 5
allele count: 1
allele frequency: 8.396446623788812e-6
allele num: 119098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1502+10T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.471+10T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.431+10T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-55T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.520T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.117+10T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.562+10T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.414T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.117+10T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.544T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.117+10T>A
  variant of: http://identifiers.org/hgnc/9765
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/5-176730190-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730190
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730190
    reference: chr 5
allele count: 5
allele frequency: 4.185221147085412e-5
allele num: 119468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.454G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-82G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.545G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.100G>T
  hgvsp: ENSP00000421442.1:p.Val34Leu
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.517G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.414G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.100G>T
  hgvsp: ENSP00000377235.2:p.Val34Leu
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1485G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.100G>T
  hgvsp: ENSP00000304376.6:p.Val34Leu
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.493G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.387G>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val34Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

5-176730197-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730197
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730197
    reference: chr 5
allele count: 2
allele frequency: 1.673920321392702e-5
allele num: 119480
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.93C>A
  hgvsp: ENST00000303251.6:c.93C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.447C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.93C>A
  hgvsp: ENST00000393611.2:c.93C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1478C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-89C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.93C>A
  hgvsp: ENST00000504395.1:c.93C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.380C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.486C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.510C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.407C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.538C>A
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg31Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

5-176730203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730203
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730203
    reference: chr 5
allele count: 20
allele frequency: 1.673640167364017e-4
allele num: 119500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.87C>T
  hgvsp: ENST00000504395.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.504C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.480C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.401C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.441C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1472C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.87C>T
  hgvsp: ENST00000303251.6:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.87C>T
  hgvsp: ENST00000393611.2:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.374C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.532C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-95C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12509
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His29His
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-176730206-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730206
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730206
    reference: chr 5
allele count: 1
allele frequency: 8.367360599772408e-6
allele num: 119512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.477G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.84G>T
  hgvsp: ENST00000504395.1:c.84G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.84G>T
  hgvsp: ENST00000303251.6:c.84G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.84G>T
  hgvsp: ENST00000393611.2:c.84G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.501G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.529G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.371G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.438G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-98G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1469G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.398G>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val28Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-176730208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730208
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730208
    reference: chr 5
allele count: 1
allele frequency: 8.366940544520491e-6
allele num: 119518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.82G>A
  hgvsp: ENSP00000377235.2:p.Val28Met
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.436G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1467G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.475G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.527G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.82G>A
  hgvsp: ENSP00000421442.1:p.Val28Met
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.82G>A
  hgvsp: ENSP00000304376.6:p.Val28Met
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-100G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.396G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.369G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.499G>A
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val28Met
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

5-176730210-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730210
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730210
    reference: chr 5
allele count: 2
allele frequency: 1.673444115333769e-5
allele num: 119514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-102A>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1465A>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.434A>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.80A>T
  hgvsp: ENSP00000304376.6:p.Tyr27Phe
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.367A>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.525A>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.473A>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.394A>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.80A>T
  hgvsp: ENSP00000377235.2:p.Tyr27Phe
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.80A>T
  hgvsp: ENSP00000421442.1:p.Tyr27Phe
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.497A>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr27Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

5-176730225-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730225
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730225
    reference: chr 5
allele count: 1
allele frequency: 8.364980844193866e-6
allele num: 119546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-117G>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.482G>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.419G>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.458G>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.65G>C
  hgvsp: ENSP00000421442.1:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1450G>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.65G>C
  hgvsp: ENSP00000377235.2:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.379G>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.65G>C
  hgvsp: ENSP00000304376.6:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.352G>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.510G>C
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21423
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser22Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-176730233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730233
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730233
    reference: chr 5
allele count: 1
allele frequency: 8.365400702693659e-6
allele num: 119540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.450C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1442C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.57C>T
  hgvsp: ENST00000303251.6:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-125C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.57C>T
  hgvsp: ENST00000393611.2:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.474C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.411C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.57C>T
  hgvsp: ENST00000504395.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.371C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.344C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.502C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly19Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

5-176730241-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730241
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730241
    reference: chr 5
allele count: 1
allele frequency: 8.366520531441385e-6
allele num: 119524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-133T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.363T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.49T>A
  hgvsp: ENSP00000421442.1:p.Tyr17Asn
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.494T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.49T>A
  hgvsp: ENSP00000304376.6:p.Tyr17Asn
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.49T>A
  hgvsp: ENSP00000377235.2:p.Tyr17Asn
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.403T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1434T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.466T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.442T>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.336T>A
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr17Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

5-176730245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730245
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730245
    reference: chr 5
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.45G>A
  hgvsp: ENST00000393611.2:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.438G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.45G>A
  hgvsp: ENST00000504395.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.45G>A
  hgvsp: ENST00000303251.6:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.462G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1430G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.332G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.490G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.399G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.359G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-137G>A
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys15Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176730251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730251
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730251
    reference: chr 5
allele count: 1
allele frequency: 8.369181326682624e-6
allele num: 119486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-143G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.39G>A
  hgvsp: ENST00000504395.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.39G>A
  hgvsp: ENST00000393611.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.456G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1424G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.39G>A
  hgvsp: ENST00000303251.6:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.393G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.432G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.484G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.326G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.353G>A
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu13Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/5-176730263-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730263
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730263
    reference: chr 5
allele count: 5
allele frequency: 4.187815133088765e-5
allele num: 119394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.27G>T
  hgvsp: ENSP00000304376.6:p.Lys9Asn
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.420G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-155G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.381G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.27G>T
  hgvsp: ENSP00000377235.2:p.Lys9Asn
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.472G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.27G>T
  hgvsp: ENSP00000421442.1:p.Lys9Asn
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.314G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.341G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.444G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1412G>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys9Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-176730281-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730281
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730281
    reference: chr 5
allele count: 8
allele frequency: 6.712986271943074e-5
allele num: 119172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.363G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.296G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.426G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1394G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.9G>T
  hgvsp: ENST00000303251.6:c.9G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.454G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.9G>T
  hgvsp: ENST00000393611.2:c.9G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.402G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.9G>T
  hgvsp: ENST00000504395.1:c.9G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-173G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.323G>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly3Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-176730296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730296
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730296
    reference: chr 5
allele count: 11
allele frequency: 9.251938701700674e-5
allele num: 118894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.411C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-188C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-7C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1379C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.281C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.348C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.387C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.308C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-7C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.439C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/5-176730312-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730312
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730312
    reference: chr 5
allele count: 1
allele frequency: 8.439245868989148e-6
allele num: 118494
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-23G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.332G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1363G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.423G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-204G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.292G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-23G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-23G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.371G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.395G>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.265G>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7383
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-176730312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730312
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730312
    reference: chr 5
allele count: 1
allele frequency: 8.439245868989148e-6
allele num: 118494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.395G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.332G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-204G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.371G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-23G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.265G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1363G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.423G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-23G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.292G>A
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7383
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

5-176730313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730313
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730313
    reference: chr 5
allele count: 1
allele frequency: 8.439103429651633e-6
allele num: 118496
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-24C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-205C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.331C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.370C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.422C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.291C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-24C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.264C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.394C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1362C>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

5-176730318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730318
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730318
    reference: chr 5
allele count: 8
allele frequency: 6.763268687756793e-5
allele num: 118286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.417C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1357C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.286C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.259C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-29C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-29C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.389C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-210C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.326C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.365C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-176730321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730321
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730321
    reference: chr 5
allele count: 1
allele frequency: 8.453657052040712e-6
allele num: 118292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.386G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-213G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-32G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.362G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.414G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.323G>A
  variant of: http://identifiers.org/hgnc/9765
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: n.256G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

5-176730324-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730324
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730324
    reference: chr 5
allele count: 1
allele frequency: 8.465966813410092e-6
allele num: 118120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-3C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-216C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-35C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.383C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-3C>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-3C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-3C>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-3C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.411C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.320C>G
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.359C>G
  variant of: http://identifiers.org/hgnc/9765
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.256-3C>G
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

5-176730326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730326
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730326
    reference: chr 5
allele count: 12
allele frequency: 1.016397885892397e-4
allele num: 118064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-5C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-5C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.409C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-5C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-5C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.381C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.318C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-37C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.357C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-5C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-218C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13522
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12078
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: n.256-5C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

5-176730329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730329
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730329
    reference: chr 5
allele count: 1
allele frequency: 8.48219587086705e-6
allele num: 117894
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-40C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-8C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-8C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.406C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-8C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.378C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.354C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-8C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-221C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-8C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.315C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.256-8C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-176730333-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730333
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730332
    reference: chr 5
allele count: 5
allele frequency: 4.24844931599966e-5
allele num: 117690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.373delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-13delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-13delC
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.310delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.349delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-13delC
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-13delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-45delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.401delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-13delC
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-226delC
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12679
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11907
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: CG
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-176730334-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730334
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730334
    reference: chr 5
allele count: 2
allele frequency: 1.699697453853214e-5
allele num: 117668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-13C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-226C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.373C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-45C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.349C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.310C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-13C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.401C>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-13C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-13C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-13C>A
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

5-176730337-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730337
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730337
    reference: chr 5
allele count: 1
allele frequency: 8.503545978673106e-6
allele num: 117598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.370T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-16T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-229T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.398T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-48T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-16T>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.346T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-16T>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-16T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.307T>C
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-16T>C
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-176730339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730339
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730339
    reference: chr 5
allele count: 2
allele frequency: 1.70407102568035e-5
allele num: 117366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.396C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-18C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.305C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-231C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-18C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-18C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.368C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-50C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.344C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-18C>T
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-18C>T
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8365
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4817
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

5-176730340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730340
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730340
    reference: chr 5
allele count: 1
allele frequency: 8.527330092947898e-6
allele num: 117270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000421442
  ensembl transcript: ENST00000504395
  gene symbol: RAB24
  hgvsc: ENST00000504395.1:c.-32-19G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000512758
  gene symbol: RAB24
  hgvsc: ENST00000512758.1:n.256-19G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000471466
  gene symbol: RAB24
  hgvsc: ENST00000471466.1:n.367G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000302085
  ensembl transcript: ENST00000303270
  gene symbol: RAB24
  hgvsc: ENST00000303270.6:c.-232G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000478234
  gene symbol: RAB24
  hgvsc: ENST00000478234.1:n.395G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-19G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000393610
  gene symbol: RAB24
  hgvsc: ENST00000393610.3:n.304G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-19G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169228
  ensembl transcript: ENST00000495458
  gene symbol: RAB24
  hgvsc: ENST00000495458.1:n.343G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000304376
  ensembl transcript: ENST00000303251
  gene symbol: RAB24
  hgvsc: ENST00000303251.6:c.-51G>A
  variant of: http://identifiers.org/hgnc/9765
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169228
  ensembl protein: ENSP00000377235
  ensembl transcript: ENST00000393611
  gene symbol: RAB24
  hgvsc: ENST00000393611.2:c.-32-19G>A
  variant of: http://identifiers.org/hgnc/9765
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-176730940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730940
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730940
    reference: chr 5
allele count: 1
allele frequency: 1.232680834278389e-5
allele num: 81124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.137C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-619G>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-47C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.85C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-47C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-619G>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-47C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-47C>G
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4078
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-176730943-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730943
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730943
    reference: chr 5
allele count: 1
allele frequency: 1.220226474033581e-5
allele num: 81952
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-44A>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-44A>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-622T>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-44A>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-44A>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-622T>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.88A>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.140A>C
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6760
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5332
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

5-176730944-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730944
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730944
    reference: chr 5
allele count: 1
allele frequency: 1.220613724580719e-5
allele num: 81926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-43C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.141C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-43C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.89C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-623G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-623G>A
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19805
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8063
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/5-176730945-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730945
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730945
    reference: chr 5
allele count: 1
allele frequency: 1.217018790770129e-5
allele num: 82168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.142C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-624G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-42C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-42C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.90C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-42C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-42C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-624G>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19705
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

5-176730958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730958
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730958
    reference: chr 5
allele count: 8
allele frequency: 9.408444078560508e-5
allele num: 85030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-637G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-29C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.103C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.155C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-637G>A
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17011
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

5-176730962-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730962
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730962
    reference: chr 5
allele count: 2
allele frequency: 2.299643555248936e-5
allele num: 86970
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-25T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-25T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.159T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-641A>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-25T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-25T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-641A>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.107T>C
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

5-176730963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730963
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730963
    reference: chr 5
allele count: 1
allele frequency: 1.14009485589201e-5
allele num: 87712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-642C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-24G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-24G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.160G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-24G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.108G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-24G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-642C>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20074
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

5-176730964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730964
    reference: chr 5
allele count: 1
allele frequency: 1.131759433214876e-5
allele num: 88358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-643G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.109C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-643G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.161C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-176730971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176730971
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176730971
    reference: chr 5
allele count: 4
allele frequency: 4.259669449650707e-5
allele num: 93904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-650G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.116C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-650G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.-16C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.168C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

5-176731013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731013
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731013
    reference: chr 5
allele count: 1
allele frequency: 8.591508153341238e-6
allele num: 116394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-692G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.27C>T
  hgvsp: ENST00000303204.4:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.27C>T
  hgvsp: ENST00000503216.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.27C>T
  hgvsp: ENST00000510797.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.210C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.27C>T
  hgvsp: ENST00000504594.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-692G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.158C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser9Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

5-176731020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731020
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731020
    reference: chr 5
allele count: 3
allele frequency: 2.56353289012698e-5
allele num: 117026
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.34C>T
  hgvsp: ENSP00000302114.4:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.165C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-699G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.34C>T
  hgvsp: ENSP00000427097.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.217C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.34C>T
  hgvsp: ENSP00000421657.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-699G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.34C>T
  hgvsp: ENSP00000423873.1:p.Arg12Trp
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12398
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg12Trp
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

5-176731022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731022
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731022
    reference: chr 5
allele count: 10
allele frequency: 8.532568815167494e-5
allele num: 117198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.36G>A
  hgvsp: ENST00000503216.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-701C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.219G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.36G>A
  hgvsp: ENST00000303204.4:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.36G>A
  hgvsp: ENST00000510797.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.36G>A
  hgvsp: ENST00000504594.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-701C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.167G>A
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41418
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg12Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-176731026-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731026
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731025
    reference: chr 5
allele count: 1
allele frequency: 8.512376996152406e-6
allele num: 117476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.225delC
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-706delG
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.173delC
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.42delC
  hgvsp: ENSP00000423873.1:p.Trp15GlyfsTer19
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.42delC
  hgvsp: ENSP00000302114.4:p.Trp15GlyfsTer21
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-706delG
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.42delC
  hgvsp: ENSP00000421657.1:p.Trp15GlyfsTer21
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.42delC
  hgvsp: ENSP00000427097.1:p.Trp15GlyfsTer21
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Trp15GlyfsTer21
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: TC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

5-176731029-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731029
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731029
    reference: chr 5
allele count: 1
allele frequency: 8.504558443325623e-6
allele num: 117584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-708A>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.226T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.174T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.43T>C
  hgvsp: ENSP00000427097.1:p.Trp15Arg
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-708A>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.43T>C
  hgvsp: ENSP00000421657.1:p.Trp15Arg
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.43T>C
  hgvsp: ENSP00000302114.4:p.Trp15Arg
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.43T>C
  hgvsp: ENSP00000423873.1:p.Trp15Arg
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Trp15Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

5-176731064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731064
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731064
    reference: chr 5
allele count: 24
allele frequency: 2.046629031432811e-4
allele num: 117266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-743G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.78C>T
  hgvsp: ENST00000510797.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-743G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.78C>T
  hgvsp: ENST00000503216.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.78C>T
  hgvsp: ENST00000504594.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.209C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.78C>T
  hgvsp: ENST00000303204.4:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.261C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12925
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39978
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr26Tyr
num of homozygotes: 1
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-176731084-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731084
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731084
    reference: chr 5
allele count: 2
allele frequency: 1.732952083874881e-5
allele num: 115410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+6T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+6T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+6T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+6T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+6T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-763A>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+6T>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-763A>G
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: c.92+6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

5-176731109-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731109
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731109
    reference: chr 5
allele count: 1
allele frequency: 8.91885624587503e-6
allele num: 112122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+31C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-788G>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+31C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+31C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+31C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+31C>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-788G>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+31C>G
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20316
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10499
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

5-176731110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731110
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731110
    reference: chr 5
allele count: 6
allele frequency: 5.355708292421673e-5
allele num: 112030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-789G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+32C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-789G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+32C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+32C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+32C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+32C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+32C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8391
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19362
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23222
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

5-176731116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731116
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731116
    reference: chr 5
allele count: 2
allele frequency: 1.810577393130669e-5
allele num: 110462
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+38G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-795C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-795C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+38G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+38G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+38G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+38G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+38G>A
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

5-176731119-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731119
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731119
    reference: chr 5
allele count: 2
allele frequency: 1.823287021842978e-5
allele num: 109692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+41A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-798T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+41A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+41A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+41A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+41A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-798T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+41A>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS

5-176731120-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731120
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731120
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 109768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+42T>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-799A>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+42T>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+42T>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+42T>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+42T>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+42T>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-799A>T
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

5-176731122-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731122
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731122
    reference: chr 5
allele count: 1
allele frequency: 9.179364787956674e-6
allele num: 108940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-801A>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+44T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+44T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+44T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+44T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+44T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-801A>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+44T>G
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15730
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4778
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-176731129-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731129
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731129
    reference: chr 5
allele count: 1
allele frequency: 9.415132000150641e-6
allele num: 106212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.275+51C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.223+51C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.92+51C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-808G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.92+51C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-808G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.92+51C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.92+51C>A
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-176731530-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731530
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731530
    reference: chr 5
allele count: 1
allele frequency: 2.848029163818637e-5
allele num: 35112
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-96T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1209A>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1209A>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-47T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-96T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-96T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-96T>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-96T>G
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28184
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7655
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9839
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17551
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176731532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731532
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731532
    reference: chr 5
allele count: 1
allele frequency: 2.839779633100471e-5
allele num: 35214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-94G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-94G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-45G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1211C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-94G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-94G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1211C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-94G>A
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5871
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7598
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

5-176731533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731533
    reference: chr 5
allele count: 28
allele frequency: 7.941910596777854e-4
allele num: 35256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-93C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-93C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-44C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1212G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-93C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1212G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-93C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-93C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28401
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3973
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6797
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9927
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18659
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

5-176731566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731566
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731566
    reference: chr 5
allele count: 2
allele frequency: 4.220834036805673e-5
allele num: 47384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-60C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-60C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-11C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-60C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-60C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1245G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1245G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-60C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9669
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-176731567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731567
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731567
    reference: chr 5
allele count: 3
allele frequency: 6.182762458266353e-5
allele num: 48522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-59C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-59C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-10C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1246G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-59C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-59C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-59C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1246G>A
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

5-176731570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731570
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731570
    reference: chr 5
allele count: 1
allele frequency: 1.958480219349784e-5
allele num: 51060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-56C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1249G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-56C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1249G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-7C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-56C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-56C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-56C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
hgvs: c.93-7C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

5-176731571-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731571
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731571
    reference: chr 5
allele count: 3
allele frequency: 5.620082427875609e-5
allele num: 53380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.93-6G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1250C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-55G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1250C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-55G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-55G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-55G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-55G>T
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
hgvs: c.93-6G>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176731586-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731586
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731586
    reference: chr 5
allele count: 1
allele frequency: 1.308386759125998e-5
allele num: 76430
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-40G>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.102G>C
  hgvsp: ENST00000510797.1:c.102G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1265C>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-40G>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-40G>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1265C>G
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-40G>C
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-40G>C
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23201
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21758
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25285
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly34Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/5-176731588-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731588
    reference: chr 5
allele count: 2
allele frequency: 2.509788173878125e-5
allele num: 79688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-38C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1267G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1267G>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-38C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-38C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.104C>A
  hgvsp: ENSP00000423873.1:p.Ala35Glu
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-38C>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-38C>A
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala35Glu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

5-176731590-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731590
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731590
    reference: chr 5
allele count: 2
allele frequency: 2.376087059829872e-5
allele num: 84172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-36A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1269T>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.106A>G
  hgvsp: ENSP00000423873.1:p.Ser36Gly
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-36A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-36A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-36A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-36A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1269T>C
  variant of: http://identifiers.org/hgnc/14008
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser36Gly
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-176731601-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731601
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731601
    reference: chr 5
allele count: 1
allele frequency: 9.973669512487035e-6
allele num: 100264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-25G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*3G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1280C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1280C>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-25G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-25G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-25G>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-25G>T
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

5-176731603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731603
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731603
    reference: chr 5
allele count: 1
allele frequency: 9.736719115126966e-6
allele num: 102704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1282G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1282G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-23C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-23C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

5-176731606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731606
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731606
    reference: chr 5
allele count: 1
allele frequency: 9.364348054088474e-6
allele num: 106788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1285G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-20C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1285G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-20C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-20C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-20C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-20C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39133
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-176731617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731617
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731617
    reference: chr 5
allele count: 1
allele frequency: 8.716268042674849e-6
allele num: 114728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.276-9C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.93-9C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1296G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.93-9C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1296G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.93-9C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.362-9C>T
  variant of: http://identifiers.org/hgnc/30255
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

5-176731628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731628
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731628
    reference: chr 5
allele count: 1
allele frequency: 8.47802495930548e-6
allele num: 117952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.278A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.364A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.95A>G
  hgvsp: ENSP00000427097.1:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1307T>C
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.95A>G
  hgvsp: ENSP00000421657.1:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*30A>G
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.95A>G
  hgvsp: ENSP00000302114.4:p.Lys32Arg
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1307T>C
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys32Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

5-176731633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731633
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731633
    reference: chr 5
allele count: 1
allele frequency: 8.432698632216282e-6
allele num: 118586
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.100G>A
  hgvsp: ENSP00000302114.4:p.Val34Ile
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1312C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.369G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1312C>T
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.283G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.100G>A
  hgvsp: ENSP00000427097.1:p.Val34Ile
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.100G>A
  hgvsp: ENSP00000421657.1:p.Val34Ile
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val34Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

5-176731635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731635
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731635
    reference: chr 5
allele count: 1
allele frequency: 8.420059950826851e-6
allele num: 118764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1314G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.371C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1314G>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.285C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.102C>T
  hgvsp: ENST00000504594.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.102C>T
  hgvsp: ENST00000303204.4:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.102C>T
  hgvsp: ENST00000503216.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val34Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

5-176731647-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731647
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731645
    reference: chr 5
allele count: 2
allele frequency: 1.669727834362999e-5
allele num: 119780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.116_117delTA
  hgvsp: ENSP00000427097.1:p.Ile39SerfsTer8
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*51_*52delTA
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1328_1354-1327delAT
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.385_386delTA
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.116_117delTA
  hgvsp: ENSP00000302114.4:p.Ile39SerfsTer8
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.116_117delTA
  hgvsp: ENSP00000421657.1:p.Ile39SerfsTer8
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.299_300delTA
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1328_283-1327delAT
  variant of: http://identifiers.org/hgnc/14008
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43752
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile39SerfsTer8
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: CAT
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

5-176731648-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176731648
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176731648
    reference: chr 5
allele count: 47
allele frequency: 3.920718075344523e-4
allele num: 119876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000302114
  ensembl transcript: ENST00000303204
  gene symbol: PRELID1
  hgvsc: ENST00000303204.4:c.115A>T
  hgvsp: ENSP00000302114.4:p.Ile39Leu
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000511309
  gene symbol: PRELID1
  hgvsc: ENST00000511309.1:n.298A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000427097
  ensembl transcript: ENST00000503216
  gene symbol: PRELID1
  hgvsc: ENST00000503216.1:c.115A>T
  hgvsp: ENSP00000427097.1:p.Ile39Leu
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000421657
  ensembl transcript: ENST00000504594
  gene symbol: PRELID1
  hgvsc: ENST00000504594.1:c.115A>T
  hgvsp: ENSP00000421657.1:p.Ile39Leu
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000503473
  gene symbol: MXD3
  hgvsc: ENST00000503473.1:n.1354-1327T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000213347
  ensembl transcript: ENST00000509339
  gene symbol: MXD3
  hgvsc: ENST00000509339.1:n.283-1327T>A
  variant of: http://identifiers.org/hgnc/14008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000169230
  ensembl transcript: ENST00000502670
  gene symbol: PRELID1
  hgvsc: ENST00000502670.1:n.384A>T
  variant of: http://identifiers.org/hgnc/30255
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000169230
  ensembl protein: ENSP00000423873
  ensembl transcript: ENST00000510797
  gene symbol: PRELID1
  hgvsc: ENST00000510797.1:c.*50A>T
  variant of: http://identifiers.org/hgnc/30255
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 43759
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Ile39Leu
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11404
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4941
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532426137060194e-5
allele num: 65256
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.975682e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 8.93e0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11408
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3097
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.631956528375615e-5
allele num: 65514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.636e0

DP
type: SiteQuality
SIO_000300: 1.982351e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

GenotypeQuality
all individuals: 7722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11409
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4935
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744591765526867e-4
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

FS
type: SiteQuality
SIO_000300: 3.545e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

QD
type: SiteQuality
SIO_000300: 1.195e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.803e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

DP
type: SiteQuality
SIO_000300: 1.982738e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11419
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.44081034903588e-4
allele num: 65552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.067961165048543e-4
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.984143e6

GenotypeQuality
all individuals: 303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525180733916969e-5
allele num: 65566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.983342e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 1.579e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 1.983344e6

FS
type: SiteQuality
SIO_000300: 1.463e0

VQSLOD
type: SiteQuality
SIO_000300: -2.263e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.747e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11409
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050454517723141e-5
allele num: 65564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

FS
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

QD
type: SiteQuality
SIO_000300: 1.029e1

DP
type: SiteQuality
SIO_000300: 1.983573e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524390243902439e-5
allele num: 65600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 5.34e-1

ClippingRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.983724e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65600
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.217e0

ReadPosRankSum
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SIO_000300: 9.65e-1

DP
type: SiteQuality
SIO_000300: 1.983417e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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MQRankSum
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SIO_000300: -5.7e-1

VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
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ReadPosRankSum
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SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

DP
type: SiteQuality
SIO_000300: 1.983082e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524901643843972e-5
allele num: 65578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
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SIO_000300: -9.419999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.637e0

QD
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SIO_000300: 1.398e1

DP
type: SiteQuality
SIO_000300: 1.98263e6

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.98003992015968e-5
allele num: 10020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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South Asian
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ReadPosRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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SIO_000300: -5.9e-2

MQ
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SIO_000300: 5.963e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.634753397465261e-5
allele num: 65490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.980507e6

ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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BaseQRankSum
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SIO_000300: -3.519e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 9.347978499649451e-4
allele num: 8558
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South Asian
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African
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.154e1

MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65164
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.615384615384616e-4
allele num: 11440
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

FS
type: SiteQuality
SIO_000300: 5.9e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.96846e6

GenotypeQuality
all individuals: 491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11406
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

VQSLOD
type: SiteQuality
SIO_000300: -4.404e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.399e0

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

DP
type: SiteQuality
SIO_000300: 1.951323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 8.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11406
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4888
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19000
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539740707664829e-5
allele num: 64946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.404e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.399e0

QD
type: SiteQuality
SIO_000300: 1.005e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

DP
type: SiteQuality
SIO_000300: 1.951323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 8.243e0

GenotypeQuality
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4042
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539740707664829e-5
allele num: 64946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

FS
type: SiteQuality
SIO_000300: 8.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

DP
type: SiteQuality
SIO_000300: 1.951143e6

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
all individuals: 17753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4868
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11411
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.297114794352363e-4
allele num: 16290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542638528939899e-5
allele num: 64824
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

QD
type: SiteQuality
SIO_000300: 1.394e1

FS
type: SiteQuality
SIO_000300: 1.024e0

DP
type: SiteQuality
SIO_000300: 1.93842e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 619
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542353013757789e-5
allele num: 64836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.284e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.098e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -5.427999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.827e0

DP
type: SiteQuality
SIO_000300: 1.935657e6

GenotypeQuality
all individuals: 4321
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11407
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16619
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018329938900204e-4
allele num: 9820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

DP
type: SiteQuality
SIO_000300: 1.925306e6

QD
type: SiteQuality
SIO_000300: 1.914e1

GenotypeQuality
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16225
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
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variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11415
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.686082158185162e-3
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545595054095827e-5
allele num: 64700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 1.92117e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 1271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.54765221159501e-5
allele num: 64614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.764e1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

DP
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SIO_000300: 1.913959e6

ReadPosRankSum
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SIO_000300: 7.43e-1

FS
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.197322756569162e-5
allele num: 64544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 7.7e-2

MQRankSum
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SIO_000300: 4.52e-1

VQSLOD
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SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
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SIO_000300: 1.29e0

DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

QD
type: SiteQuality
SIO_000300: 9.94e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.100102303376012e-5
allele num: 64514
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -8.92e-1

FS
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.16e0

ClippingRankSum
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SIO_000300: 9.56e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.907683e6

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178689297501179e-4
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.904659e6

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

FS
type: SiteQuality
SIO_000300: 2.931e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.124e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.106458326861545e-5
allele num: 64382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: 7.099999999999999e-2

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.786e1

DP
type: SiteQuality
SIO_000300: 1.903128e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.032631144155308e-4
allele num: 9684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.728e1

DP
type: SiteQuality
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FS
type: SiteQuality
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -3.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44260
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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African
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allele count: 1
allele frequency: 1.726519337016575e-4
allele num: 5792
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.981e0

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.992e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

Other
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 1.860119047619048e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
type: SiteQuality
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FS
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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SIO_000300: 2.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.236436015565595e-5
allele num: 44714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.09e1

MQ
type: SiteQuality
SIO_000300: 5.809e1

MQRankSum
type: SiteQuality
SIO_000300: -1.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.378e0

DP
type: SiteQuality
SIO_000300: 8.38365e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.229455566950551e-5
allele num: 44854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.932e0

InbreedingCoeff
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SIO_000300: -6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.609e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.4343e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 7
allele frequency: 1.234132581100141e-3
allele num: 5672
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13758
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.154058245734965e-5
allele num: 46424
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.821e1

DP
type: SiteQuality
SIO_000300: 9.32025e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.097e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.92e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.084515731030228e-4
allele num: 6484
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.679e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

QD
type: SiteQuality
SIO_000300: 1.476e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

DP
type: SiteQuality
SIO_000300: 9.69313e5

VQSLOD
type: SiteQuality
SIO_000300: -7.18e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.214771622934888e-4
allele num: 8232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.80184e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

MQ
type: SiteQuality
SIO_000300: 5.862e1

VQSLOD
type: SiteQuality
SIO_000300: -2.224e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.071422653078134e-5
allele num: 48276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.425e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.90059e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

FS
type: SiteQuality
SIO_000300: 2.318e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.790178571428571e-4
allele num: 14336
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.565484204264379e-5
allele num: 63878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.67275162767515e-5
allele num: 64202
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.391629e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 335
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.018329938900204e-4
allele num: 9820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.775324231020433e-5
allele num: 64306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.586797841954935e-4
allele num: 6302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.840039254170756e-4
allele num: 16304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

DP
type: SiteQuality
SIO_000300: 1.393597e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 1.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.498e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 1.134e1

MQ
type: SiteQuality
SIO_000300: 5.568e1

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64466
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.127450980392157e-5
allele num: 16320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.794e0

QD
type: SiteQuality
SIO_000300: 1.679e1

FS
type: SiteQuality
SIO_000300: 2.159e0

MQ
type: SiteQuality
SIO_000300: 5.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.602e0

DP
type: SiteQuality
SIO_000300: 1.39572e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549762886278399e-5
allele num: 64526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 5.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

DP
type: SiteQuality
SIO_000300: 1.397256e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 22

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 332
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GenotypeQuality
all individuals: 47567
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.476741324144721e-3
allele num: 16252
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64366
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.388729e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQ
type: SiteQuality
SIO_000300: 5.421e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.905e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

FS
type: SiteQuality
SIO_000300: 1.152e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.384e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577983967682888e-5
allele num: 63372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16034
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.213886865744113e-4
allele num: 8238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -2.594e0

FS
type: SiteQuality
SIO_000300: 1.399e0

DP
type: SiteQuality
SIO_000300: 1.336547e6

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 2.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.624906567872347e-5
allele num: 61542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.15157e6

VQSLOD
type: SiteQuality
SIO_000300: -7.665e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.656e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.441915396177797e-4
allele num: 9314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.142412e6

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.51e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 4.423e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.297065611605671e-5
allele num: 60660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.81e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9046
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.898614011771407e-4
allele num: 10534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
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SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.699e1

DP
type: SiteQuality
SIO_000300: 1.072152e6

FS
type: SiteQuality
SIO_000300: 3.195e0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60276
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 5.79e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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FS
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ReadPosRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7672
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.671122994652406e-5
allele num: 59840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15464
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
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SIO_000300: 5.683e1

DP
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InbreedingCoeff
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SIO_000300: -3.1e-3

BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58374
num of homozygotes: 0

South Asian
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allele frequency: 6.549646319098769e-5
allele num: 15268
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.058753e6

MQ
type: SiteQuality
SIO_000300: 5.513e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e0

MQRankSum
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SIO_000300: -1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.027e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17668
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 6.793478260869565e-4
allele num: 1472
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1802
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.71339e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.902e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.65764447695684e-4
allele num: 2734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.569e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.464e0

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.464e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.602e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 5.74023e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 9.75e1
variant carriers: 31

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 1.239017796801081e-3
allele num: 17756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.329113924050633e-4
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.75e1

VQSLOD
type: SiteQuality
SIO_000300: -6.731e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.145e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 5.76418e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
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European (Non-Finnish)
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allele count: 2
allele frequency: 7.966857871255577e-5
allele num: 25104
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQRankSum
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

MQ
type: SiteQuality
SIO_000300: 5.739e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 25790
num of homozygotes: 0

South Asian
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allele frequency: 2.880737468792011e-4
allele num: 10414
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.8e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.973e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.663272034581288e-5
allele num: 27298
num of homozygotes: 0

Other
type: Population
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Latino
type: Population
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.72e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3418
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2826
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 6.97495989398061e-5
allele num: 28674
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.333333333333333e-4
allele num: 3000
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.903e0

MQ
type: SiteQuality
SIO_000300: 5.616e1

DP
type: SiteQuality
SIO_000300: 7.9445e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 1.3662e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12304
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.365296371635366e-5
allele num: 42278
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 3.763e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
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SIO_000300: 9.91772e5

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.744e1

QD
type: SiteQuality
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VQSLOD
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SIO_000300: -1.617e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12522
num of homozygotes: 0

African
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allele count: 2
allele frequency: 3.062787136294027e-4
allele num: 6530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5196
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.656e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.020473e6

BaseQRankSum
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SIO_000300: -2.793e0

QD
type: SiteQuality
SIO_000300: 1.272e1

VQSLOD
type: SiteQuality
SIO_000300: -2.376e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.634e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.552312946289972e-4
allele num: 12884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.057444e6

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.805249666028812e-5
allele num: 55394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.205956e6

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

QD
type: SiteQuality
SIO_000300: 1.709e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

FS
type: SiteQuality
SIO_000300: 5.711e0

VQSLOD
type: SiteQuality
SIO_000300: -1.99e-2

ReadPosRankSum
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.56e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.763419623333568e-5
allele num: 56708
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.709e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.758583400919168e-5
allele num: 14796
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10140
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58862
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5664
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.519e1

ClippingRankSum
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FS
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele count: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.58553987632789e-5
allele num: 63070
num of homozygotes: 0

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 6.209637357178341e-5
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536145503702111e-5
allele num: 65098
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.339e0

DP
type: SiteQuality
SIO_000300: 1.392374e6

FS
type: SiteQuality
SIO_000300: 1.269e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

MQ
type: SiteQuality
SIO_000300: 5.288e1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 877
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.394817e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.644e1

FS
type: SiteQuality
SIO_000300: 6.481e0

QD
type: SiteQuality
SIO_000300: 2.629e1

VQSLOD
type: SiteQuality
SIO_000300: -5.353e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.963e0

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.966568338249754e-4
allele num: 10170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.285e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

MQ
type: SiteQuality
SIO_000300: 5.201e1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 7.713e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

DP
type: SiteQuality
SIO_000300: 1.40749e6

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0