7-101844850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844850
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844850
    reference: chr 7
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2306C>T
  hgvsp: ENSP00000353401.3:p.Pro769Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1799C>T
  hgvsp: ENSP00000451558.1:p.Pro600Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5967C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1967C>T
  hgvsp: ENSP00000450125.2:p.Pro656Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5967C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2273C>T
  hgvsp: ENSP00000292535.7:p.Pro758Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5967C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5967C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5967C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2105C>T
  hgvsp: ENSP00000447373.2:p.Pro702Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2207C>T
  hgvsp: ENSP00000446630.2:p.Pro736Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5967C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5967C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25721
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro769Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

7-101844851-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844851
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844851
    reference: chr 7
allele count: 43336
allele frequency: 3.570333997923841e-1
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5968A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5968A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5968A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5968A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2274A>G
  hgvsp: ENST00000292535.7:c.2274A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2106A>G
  hgvsp: ENST00000550008.2:c.2106A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1800A>G
  hgvsp: ENST00000556210.1:c.1800A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5968A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5968A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2307A>G
  hgvsp: ENST00000360264.3:c.2307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1968A>G
  hgvsp: ENST00000546411.2:c.1968A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2208A>G
  hgvsp: ENST00000549414.2:c.2208A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5968A>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.25e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 32365
  bin: 9.75e1
  variant carriers: 32283
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 245
genotype quality: GenotypeQuality
hgvs: p.Pro769Pro
num of homozygotes: 8171
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-101844857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844857
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844857
    reference: chr 7
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5974C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2214C>T
  hgvsp: ENST00000549414.2:c.2214C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1974C>T
  hgvsp: ENST00000546411.2:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5974C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5974C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5974C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1806C>T
  hgvsp: ENST00000556210.1:c.1806C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2112C>T
  hgvsp: ENST00000550008.2:c.2112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5974C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5974C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2313C>T
  hgvsp: ENST00000360264.3:c.2313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2280C>T
  hgvsp: ENST00000292535.7:c.2280C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5974C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu771Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

7-101844858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844858
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844858
    reference: chr 7
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5975G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2314G>A
  hgvsp: ENSP00000353401.3:p.Ala772Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5975G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5975G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2113G>A
  hgvsp: ENSP00000447373.2:p.Ala705Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1807G>A
  hgvsp: ENSP00000451558.1:p.Ala603Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1975G>A
  hgvsp: ENSP00000450125.2:p.Ala659Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2215G>A
  hgvsp: ENSP00000446630.2:p.Ala739Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2281G>A
  hgvsp: ENSP00000292535.7:p.Ala761Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5975G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5975G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5975G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5975G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala772Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/7-101844860-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844860
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844860
    reference: chr 7
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1809C>A
  hgvsp: ENST00000556210.1:c.1809C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2283C>A
  hgvsp: ENST00000292535.7:c.2283C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5977C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2217C>A
  hgvsp: ENST00000549414.2:c.2217C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5977C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5977C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2316C>A
  hgvsp: ENST00000360264.3:c.2316C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1977C>A
  hgvsp: ENST00000546411.2:c.1977C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5977C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5977C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5977C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2115C>A
  hgvsp: ENST00000550008.2:c.2115C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5977C>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala772Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

7-101844877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844877
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844877
    reference: chr 7
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2300C>T
  hgvsp: ENSP00000292535.7:p.Pro767Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2234C>T
  hgvsp: ENSP00000446630.2:p.Pro745Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5994C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2333C>T
  hgvsp: ENSP00000353401.3:p.Pro778Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2132C>T
  hgvsp: ENSP00000447373.2:p.Pro711Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1994C>T
  hgvsp: ENSP00000450125.2:p.Pro665Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1826C>T
  hgvsp: ENSP00000451558.1:p.Pro609Leu
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro778Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-101844880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844880
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844880
    reference: chr 7
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2237C>T
  hgvsp: ENSP00000446630.2:p.Ser746Phe
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1997C>T
  hgvsp: ENSP00000450125.2:p.Ser666Phe
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1829C>T
  hgvsp: ENSP00000451558.1:p.Ser610Phe
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2303C>T
  hgvsp: ENSP00000292535.7:p.Ser768Phe
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2135C>T
  hgvsp: ENSP00000447373.2:p.Ser712Phe
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5997C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2336C>T
  hgvsp: ENSP00000353401.3:p.Ser779Phe
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser779Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

7-101844881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844881
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844881
    reference: chr 7
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5998C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2136C>T
  hgvsp: ENST00000550008.2:c.2136C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5998C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5998C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2304C>T
  hgvsp: ENST00000292535.7:c.2304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2238C>T
  hgvsp: ENST00000549414.2:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1998C>T
  hgvsp: ENST00000546411.2:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5998C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2337C>T
  hgvsp: ENST00000360264.3:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1830C>T
  hgvsp: ENST00000556210.1:c.1830C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5998C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5998C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5998C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser779Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

7-101844882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844882
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844882
    reference: chr 7
allele count: 58
allele frequency: 4.780823950279431e-4
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+5999G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2137G>A
  hgvsp: ENSP00000447373.2:p.Ala713Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+5999G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.1999G>A
  hgvsp: ENSP00000450125.2:p.Ala667Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2305G>A
  hgvsp: ENSP00000292535.7:p.Ala769Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+5999G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+5999G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2338G>A
  hgvsp: ENSP00000353401.3:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2239G>A
  hgvsp: ENSP00000446630.2:p.Ala747Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1831G>A
  hgvsp: ENSP00000451558.1:p.Ala611Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+5999G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+5999G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+5999G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala780Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-101844888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844888
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844888
    reference: chr 7
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2005C>T
  hgvsp: ENSP00000450125.2:p.Pro669Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2344C>T
  hgvsp: ENSP00000353401.3:p.Pro782Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2143C>T
  hgvsp: ENSP00000447373.2:p.Pro715Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1837C>T
  hgvsp: ENSP00000451558.1:p.Pro613Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2245C>T
  hgvsp: ENSP00000446630.2:p.Pro749Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6005C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2311C>T
  hgvsp: ENSP00000292535.7:p.Pro771Ser
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro782Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

7-101844893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844893
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844893
    reference: chr 7
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2010G>C
  hgvsp: ENSP00000450125.2:p.Glu670Asp
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2148G>C
  hgvsp: ENSP00000447373.2:p.Glu716Asp
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6010G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6010G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2316G>C
  hgvsp: ENSP00000292535.7:p.Glu772Asp
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6010G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6010G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6010G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2250G>C
  hgvsp: ENSP00000446630.2:p.Glu750Asp
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2349G>C
  hgvsp: ENSP00000353401.3:p.Glu783Asp
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1842G>C
  hgvsp: ENSP00000451558.1:p.Glu614Asp
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6010G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6010G>C
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu783Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

7-101844896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844896
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844896
    reference: chr 7
allele count: 7
allele frequency: 5.774529375855868e-5
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6013C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2319C>T
  hgvsp: ENST00000292535.7:c.2319C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6013C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6013C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1845C>T
  hgvsp: ENST00000556210.1:c.1845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2352C>T
  hgvsp: ENST00000360264.3:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2253C>T
  hgvsp: ENST00000549414.2:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6013C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2013C>T
  hgvsp: ENST00000546411.2:c.2013C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2151C>T
  hgvsp: ENST00000550008.2:c.2151C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6013C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6013C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6013C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala784Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-101844897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844897
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844897
    reference: chr 7
allele count: 7
allele frequency: 5.774910488887422e-5
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2353G>A
  hgvsp: ENSP00000353401.3:p.Gly785Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6014G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6014G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6014G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2152G>A
  hgvsp: ENSP00000447373.2:p.Gly718Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1846G>A
  hgvsp: ENSP00000451558.1:p.Gly616Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2320G>A
  hgvsp: ENSP00000292535.7:p.Gly774Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6014G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6014G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2254G>A
  hgvsp: ENSP00000446630.2:p.Gly752Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2014G>A
  hgvsp: ENSP00000450125.2:p.Gly672Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6014G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6014G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly785Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-101844900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844900
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844900
    reference: chr 7
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1849G>A
  hgvsp: ENSP00000451558.1:p.Ala617Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2257G>A
  hgvsp: ENSP00000446630.2:p.Ala753Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2155G>A
  hgvsp: ENSP00000447373.2:p.Ala719Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2356G>A
  hgvsp: ENSP00000353401.3:p.Ala786Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2017G>A
  hgvsp: ENSP00000450125.2:p.Ala673Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6017G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2323G>A
  hgvsp: ENSP00000292535.7:p.Ala775Thr
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala786Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

7-101844903-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844903
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844903
    reference: chr 7
allele count: 5
allele frequency: 4.127523980914329e-5
allele num: 121138
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2158T>C
  hgvsp: ENSP00000447373.2:p.Ser720Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2020T>C
  hgvsp: ENSP00000450125.2:p.Ser674Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2359T>C
  hgvsp: ENSP00000353401.3:p.Ser787Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6020T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6020T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6020T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1852T>C
  hgvsp: ENSP00000451558.1:p.Ser618Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6020T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2260T>C
  hgvsp: ENSP00000446630.2:p.Ser754Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6020T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6020T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2326T>C
  hgvsp: ENSP00000292535.7:p.Ser776Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6020T>C
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser787Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-101844906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844906
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844906
    reference: chr 7
allele count: 4
allele frequency: 3.303600925008259e-5
allele num: 121080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2023G>A
  hgvsp: ENSP00000450125.2:p.Ala675Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6023G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6023G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2329G>A
  hgvsp: ENSP00000292535.7:p.Ala777Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6023G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1855G>A
  hgvsp: ENSP00000451558.1:p.Ala619Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2161G>A
  hgvsp: ENSP00000447373.2:p.Ala721Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6023G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2362G>A
  hgvsp: ENSP00000353401.3:p.Ala788Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6023G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6023G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2263G>A
  hgvsp: ENSP00000446630.2:p.Ala755Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6023G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala788Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

7-101844907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844907
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844907
    reference: chr 7
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6024C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6024C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2024C>T
  hgvsp: ENSP00000450125.2:p.Ala675Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6024C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1856C>T
  hgvsp: ENSP00000451558.1:p.Ala619Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2363C>T
  hgvsp: ENSP00000353401.3:p.Ala788Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6024C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6024C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2162C>T
  hgvsp: ENSP00000447373.2:p.Ala721Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6024C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2264C>T
  hgvsp: ENSP00000446630.2:p.Ala755Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2330C>T
  hgvsp: ENSP00000292535.7:p.Ala777Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6024C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala788Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-101844909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844909
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844909
    reference: chr 7
allele count: 19
allele frequency: 1.570507521904447e-4
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2266C>T
  hgvsp: ENST00000549414.2:c.2266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6026C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2026C>T
  hgvsp: ENST00000546411.2:c.2026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2164C>T
  hgvsp: ENST00000550008.2:c.2164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6026C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6026C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6026C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6026C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2332C>T
  hgvsp: ENST00000292535.7:c.2332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2365C>T
  hgvsp: ENST00000360264.3:c.2365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1858C>T
  hgvsp: ENST00000556210.1:c.1858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6026C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6026C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu789Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-101844911-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844911
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844911
    reference: chr 7
allele count: 3
allele frequency: 2.480691947673938e-5
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1860G>T
  hgvsp: ENST00000556210.1:c.1860G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6028G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6028G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6028G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6028G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2367G>T
  hgvsp: ENST00000360264.3:c.2367G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2166G>T
  hgvsp: ENST00000550008.2:c.2166G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2028G>T
  hgvsp: ENST00000546411.2:c.2028G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6028G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2334G>T
  hgvsp: ENST00000292535.7:c.2334G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2268G>T
  hgvsp: ENST00000549414.2:c.2268G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6028G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6028G>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu789Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/7-101844913-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844913
    reference: chr 7
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2270C>A
  hgvsp: ENSP00000446630.2:p.Pro757Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1862C>A
  hgvsp: ENSP00000451558.1:p.Pro621Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6030C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6030C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6030C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2369C>A
  hgvsp: ENSP00000353401.3:p.Pro790Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2030C>A
  hgvsp: ENSP00000450125.2:p.Pro677Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6030C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6030C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2336C>A
  hgvsp: ENSP00000292535.7:p.Pro779Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6030C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2168C>A
  hgvsp: ENSP00000447373.2:p.Pro723Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6030C>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro790Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

7-101844913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844913
    reference: chr 7
allele count: 2
allele frequency: 1.657220509761029e-5
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2336C>T
  hgvsp: ENSP00000292535.7:p.Pro779Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2168C>T
  hgvsp: ENSP00000447373.2:p.Pro723Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2369C>T
  hgvsp: ENSP00000353401.3:p.Pro790Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1862C>T
  hgvsp: ENSP00000451558.1:p.Pro621Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6030C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6030C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2270C>T
  hgvsp: ENSP00000446630.2:p.Pro757Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2030C>T
  hgvsp: ENSP00000450125.2:p.Pro677Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6030C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6030C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6030C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6030C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6030C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro790Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

7-101844914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844914
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844914
    reference: chr 7
allele count: 2
allele frequency: 1.657632569164719e-5
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2031G>A
  hgvsp: ENST00000546411.2:c.2031G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2271G>A
  hgvsp: ENST00000549414.2:c.2271G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6031G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1863G>A
  hgvsp: ENST00000556210.1:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2370G>A
  hgvsp: ENST00000360264.3:c.2370G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6031G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6031G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6031G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2169G>A
  hgvsp: ENST00000550008.2:c.2169G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2337G>A
  hgvsp: ENST00000292535.7:c.2337G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6031G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6031G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6031G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro790Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-101844918-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844918
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844918
    reference: chr 7
allele count: 3
allele frequency: 2.487479685582568e-5
allele num: 120604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1867C>A
  hgvsp: ENSP00000451558.1:p.Pro623Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6035C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6035C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2173C>A
  hgvsp: ENSP00000447373.2:p.Pro725Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6035C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6035C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2374C>A
  hgvsp: ENSP00000353401.3:p.Pro792Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2341C>A
  hgvsp: ENSP00000292535.7:p.Pro781Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6035C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2035C>A
  hgvsp: ENSP00000450125.2:p.Pro679Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2275C>A
  hgvsp: ENSP00000446630.2:p.Pro759Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6035C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6035C>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Pro792Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-101844919-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844919
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844919
    reference: chr 7
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6036C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6036C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6036C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2375C>A
  hgvsp: ENSP00000353401.3:p.Pro792His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6036C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2276C>A
  hgvsp: ENSP00000446630.2:p.Pro759His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6036C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1868C>A
  hgvsp: ENSP00000451558.1:p.Pro623His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2036C>A
  hgvsp: ENSP00000450125.2:p.Pro679His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2174C>A
  hgvsp: ENSP00000447373.2:p.Pro725His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6036C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2342C>A
  hgvsp: ENSP00000292535.7:p.Pro781His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6036C>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro792His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

7-101844919-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844919
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844919
    reference: chr 7
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6036C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2036C>T
  hgvsp: ENSP00000450125.2:p.Pro679Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2174C>T
  hgvsp: ENSP00000447373.2:p.Pro725Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1868C>T
  hgvsp: ENSP00000451558.1:p.Pro623Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2375C>T
  hgvsp: ENSP00000353401.3:p.Pro792Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2342C>T
  hgvsp: ENSP00000292535.7:p.Pro781Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6036C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6036C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6036C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2276C>T
  hgvsp: ENSP00000446630.2:p.Pro759Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6036C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6036C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6036C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro792Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-101844923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844923
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844923
    reference: chr 7
allele count: 3
allele frequency: 2.491115023084333e-5
allele num: 120428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6040G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2346G>A
  hgvsp: ENST00000292535.7:c.2346G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2178G>A
  hgvsp: ENST00000550008.2:c.2178G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6040G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2379G>A
  hgvsp: ENST00000360264.3:c.2379G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2040G>A
  hgvsp: ENST00000546411.2:c.2040G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6040G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6040G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2280G>A
  hgvsp: ENST00000549414.2:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1872G>A
  hgvsp: ENST00000556210.1:c.1872G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6040G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6040G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6040G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro793Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

7-101844927-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844927
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844927
    reference: chr 7
allele count: 20
allele frequency: 1.661654010401954e-4
allele num: 120362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1876C>G
  hgvsp: ENSP00000451558.1:p.Leu626Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2383C>G
  hgvsp: ENSP00000353401.3:p.Leu795Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2182C>G
  hgvsp: ENSP00000447373.2:p.Leu728Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2350C>G
  hgvsp: ENSP00000292535.7:p.Leu784Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2044C>G
  hgvsp: ENSP00000450125.2:p.Leu682Val
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6044C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2284C>G
  hgvsp: ENSP00000446630.2:p.Leu762Val
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu795Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

7-101844931-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844931
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844931
    reference: chr 7
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6048A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2186A>G
  hgvsp: ENSP00000447373.2:p.Lys729Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2387A>G
  hgvsp: ENSP00000353401.3:p.Lys796Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6048A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2048A>G
  hgvsp: ENSP00000450125.2:p.Lys683Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6048A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6048A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2354A>G
  hgvsp: ENSP00000292535.7:p.Lys785Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1880A>G
  hgvsp: ENSP00000451558.1:p.Lys627Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2288A>G
  hgvsp: ENSP00000446630.2:p.Lys763Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6048A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6048A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6048A>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys796Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

7-101844947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844947
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844947
    reference: chr 7
allele count: 5
allele frequency: 4.207479215052678e-5
allele num: 118836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2370C>T
  hgvsp: ENST00000292535.7:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2202C>T
  hgvsp: ENST00000550008.2:c.2202C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6064C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2064C>T
  hgvsp: ENST00000546411.2:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6064C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2304C>T
  hgvsp: ENST00000549414.2:c.2304C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1896C>T
  hgvsp: ENST00000556210.1:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6064C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6064C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2403C>T
  hgvsp: ENST00000360264.3:c.2403C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6064C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6064C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6064C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp801Asp
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

7-101844948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844948
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844948
    reference: chr 7
allele count: 2
allele frequency: 1.682906716480706e-5
allele num: 118842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6065G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6065G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1897G>A
  hgvsp: ENSP00000451558.1:p.Ala633Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6065G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2065G>A
  hgvsp: ENSP00000450125.2:p.Ala689Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2203G>A
  hgvsp: ENSP00000447373.2:p.Ala735Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2371G>A
  hgvsp: ENSP00000292535.7:p.Ala791Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2305G>A
  hgvsp: ENSP00000446630.2:p.Ala769Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6065G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6065G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6065G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2404G>A
  hgvsp: ENSP00000353401.3:p.Ala802Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6065G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala802Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-101844952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844952
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844952
    reference: chr 7
allele count: 1
allele frequency: 8.43810648890389e-6
allele num: 118510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6069C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6069C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2207C>T
  hgvsp: ENSP00000447373.2:p.Pro736Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2408C>T
  hgvsp: ENSP00000353401.3:p.Pro803Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6069C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2069C>T
  hgvsp: ENSP00000450125.2:p.Pro690Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6069C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6069C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2375C>T
  hgvsp: ENSP00000292535.7:p.Pro792Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2309C>T
  hgvsp: ENSP00000446630.2:p.Pro770Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6069C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1901C>T
  hgvsp: ENSP00000451558.1:p.Pro634Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6069C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro803Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-101844953-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844953
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844953
    reference: chr 7
allele count: 2
allele frequency: 1.688191103232886e-5
allele num: 118470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6070C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2310C>G
  hgvsp: ENST00000549414.2:c.2310C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2208C>G
  hgvsp: ENST00000550008.2:c.2208C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6070C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6070C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2409C>G
  hgvsp: ENST00000360264.3:c.2409C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1902C>G
  hgvsp: ENST00000556210.1:c.1902C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2070C>G
  hgvsp: ENST00000546411.2:c.2070C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6070C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6070C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2376C>G
  hgvsp: ENST00000292535.7:c.2376C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6070C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6070C>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro803Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

7-101844953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844953
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844953
    reference: chr 7
allele count: 2
allele frequency: 1.688191103232886e-5
allele num: 118470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1902C>T
  hgvsp: ENST00000556210.1:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2070C>T
  hgvsp: ENST00000546411.2:c.2070C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2208C>T
  hgvsp: ENST00000550008.2:c.2208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2310C>T
  hgvsp: ENST00000549414.2:c.2310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6070C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2376C>T
  hgvsp: ENST00000292535.7:c.2376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6070C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6070C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6070C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6070C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6070C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2409C>T
  hgvsp: ENST00000360264.3:c.2409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6070C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro803Pro
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-101844954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844954
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844954
    reference: chr 7
allele count: 3
allele frequency: 2.5312610742672e-5
allele num: 118518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6071G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6071G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6071G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6071G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2410G>A
  hgvsp: ENSP00000353401.3:p.Gly804Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1903G>A
  hgvsp: ENSP00000451558.1:p.Gly635Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2071G>A
  hgvsp: ENSP00000450125.2:p.Gly691Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2209G>A
  hgvsp: ENSP00000447373.2:p.Gly737Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2311G>A
  hgvsp: ENSP00000446630.2:p.Gly771Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2377G>A
  hgvsp: ENSP00000292535.7:p.Gly793Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6071G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6071G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6071G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly804Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

7-101844954-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844954
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844954
    reference: chr 7
allele count: 1
allele frequency: 8.437536914224e-6
allele num: 118518
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2410G>C
  hgvsp: ENSP00000353401.3:p.Gly804Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1903G>C
  hgvsp: ENSP00000451558.1:p.Gly635Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2071G>C
  hgvsp: ENSP00000450125.2:p.Gly691Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2311G>C
  hgvsp: ENSP00000446630.2:p.Gly771Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2209G>C
  hgvsp: ENSP00000447373.2:p.Gly737Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6071G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2377G>C
  hgvsp: ENSP00000292535.7:p.Gly793Arg
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly804Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-101844961-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844961
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844961
    reference: chr 7
allele count: 1
allele frequency: 8.469408496510604e-6
allele num: 118072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2216A>G
  hgvsp: ENSP00000447373.2:p.Asp739Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6078A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2078A>G
  hgvsp: ENSP00000450125.2:p.Asp693Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6078A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2318A>G
  hgvsp: ENSP00000446630.2:p.Asp773Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2384A>G
  hgvsp: ENSP00000292535.7:p.Asp795Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2417A>G
  hgvsp: ENSP00000353401.3:p.Asp806Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1910A>G
  hgvsp: ENSP00000451558.1:p.Asp637Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6078A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6078A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6078A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6078A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6078A>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18435
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp806Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/7-101844962-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844962
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844962
    reference: chr 7
allele count: 1
allele frequency: 8.462098261885017e-6
allele num: 118174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1911C>A
  hgvsp: ENSP00000451558.1:p.Asp637Glu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6079C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6079C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2319C>A
  hgvsp: ENSP00000446630.2:p.Asp773Glu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2385C>A
  hgvsp: ENSP00000292535.7:p.Asp795Glu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2079C>A
  hgvsp: ENSP00000450125.2:p.Asp693Glu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2217C>A
  hgvsp: ENSP00000447373.2:p.Asp739Glu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6079C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6079C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2418C>A
  hgvsp: ENSP00000353401.3:p.Asp806Glu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6079C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6079C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6079C>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13019
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp806Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

7-101844972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844972
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844972
    reference: chr 7
allele count: 1
allele frequency: 8.590327291469806e-6
allele num: 116410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1921G>A
  hgvsp: ENSP00000451558.1:p.Ala641Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6089G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2329G>A
  hgvsp: ENSP00000446630.2:p.Ala777Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2227G>A
  hgvsp: ENSP00000447373.2:p.Ala743Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2089G>A
  hgvsp: ENSP00000450125.2:p.Ala697Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2428G>A
  hgvsp: ENSP00000353401.3:p.Ala810Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6089G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6089G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6089G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2395G>A
  hgvsp: ENSP00000292535.7:p.Ala799Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6089G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6089G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6089G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala810Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

7-101844972-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844972
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844972
    reference: chr 7
allele count: 25
allele frequency: 2.147581822867451e-4
allele num: 116410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2428G>C
  hgvsp: ENSP00000353401.3:p.Ala810Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2227G>C
  hgvsp: ENSP00000447373.2:p.Ala743Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1921G>C
  hgvsp: ENSP00000451558.1:p.Ala641Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2329G>C
  hgvsp: ENSP00000446630.2:p.Ala777Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2089G>C
  hgvsp: ENSP00000450125.2:p.Ala697Pro
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6089G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2395G>C
  hgvsp: ENSP00000292535.7:p.Ala799Pro
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ala810Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-101844978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844978
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844978
    reference: chr 7
allele count: 1
allele frequency: 8.475869200386499e-6
allele num: 117982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6095G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2233G>A
  hgvsp: ENSP00000447373.2:p.Asp745Asn
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1927G>A
  hgvsp: ENSP00000451558.1:p.Asp643Asn
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6095G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2434G>A
  hgvsp: ENSP00000353401.3:p.Asp812Asn
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6095G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2335G>A
  hgvsp: ENSP00000446630.2:p.Asp779Asn
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2095G>A
  hgvsp: ENSP00000450125.2:p.Asp699Asn
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2401G>A
  hgvsp: ENSP00000292535.7:p.Asp801Asn
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6095G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6095G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6095G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6095G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp812Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-101844986-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844986
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844986
    reference: chr 7
allele count: 1
allele frequency: 8.472852979055108e-6
allele num: 118024
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6103A>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2343A>C
  hgvsp: ENST00000549414.2:c.2343A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1935A>C
  hgvsp: ENST00000556210.1:c.1935A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6103A>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2409A>C
  hgvsp: ENST00000292535.7:c.2409A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2103A>C
  hgvsp: ENST00000546411.2:c.2103A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6103A>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2241A>C
  hgvsp: ENST00000550008.2:c.2241A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6103A>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6103A>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6103A>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2442A>C
  hgvsp: ENST00000360264.3:c.2442A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6103A>C
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala814Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

7-101844988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844988
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844988
    reference: chr 7
allele count: 2
allele frequency: 1.694656747275839e-5
allele num: 118018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2105A>G
  hgvsp: ENSP00000450125.2:p.Gln702Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6105A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6105A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2444A>G
  hgvsp: ENSP00000353401.3:p.Gln815Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6105A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6105A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1937A>G
  hgvsp: ENSP00000451558.1:p.Gln646Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2345A>G
  hgvsp: ENSP00000446630.2:p.Gln782Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2411A>G
  hgvsp: ENSP00000292535.7:p.Gln804Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2243A>G
  hgvsp: ENSP00000447373.2:p.Gln748Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6105A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6105A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6105A>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17975
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln815Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

7-101844993-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101844993
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101844993
    reference: chr 7
allele count: 9
allele frequency: 7.62660158633313e-5
allele num: 118008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6110G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6110G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2416G>C
  hgvsp: ENSP00000292535.7:p.Val806Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6110G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1942G>C
  hgvsp: ENSP00000451558.1:p.Val648Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2110G>C
  hgvsp: ENSP00000450125.2:p.Val704Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2350G>C
  hgvsp: ENSP00000446630.2:p.Val784Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2248G>C
  hgvsp: ENSP00000447373.2:p.Val750Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6110G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6110G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2449G>C
  hgvsp: ENSP00000353401.3:p.Val817Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6110G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6110G>C
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17655
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11639
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val817Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

7-101845007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845007
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845007
    reference: chr 7
allele count: 1
allele frequency: 8.483922965979469e-6
allele num: 117870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2463G>A
  hgvsp: ENST00000360264.3:c.2463G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6124G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2262G>A
  hgvsp: ENST00000550008.2:c.2262G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6124G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6124G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6124G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2430G>A
  hgvsp: ENST00000292535.7:c.2430G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6124G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6124G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2364G>A
  hgvsp: ENST00000549414.2:c.2364G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2124G>A
  hgvsp: ENST00000546411.2:c.2124G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1956G>A
  hgvsp: ENST00000556210.1:c.1956G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6124G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val821Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-101845014-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845014
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845014
    reference: chr 7
allele count: 1
allele frequency: 8.487379267029927e-6
allele num: 117822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1963G>C
  hgvsp: ENSP00000451558.1:p.Glu655Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6131G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6131G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2371G>C
  hgvsp: ENSP00000446630.2:p.Glu791Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2470G>C
  hgvsp: ENSP00000353401.3:p.Glu824Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6131G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6131G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2131G>C
  hgvsp: ENSP00000450125.2:p.Glu711Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2269G>C
  hgvsp: ENSP00000447373.2:p.Glu757Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6131G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6131G>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2437G>C
  hgvsp: ENSP00000292535.7:p.Glu813Gln
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6131G>C
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu824Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-101845017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845017
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845017
    reference: chr 7
allele count: 3
allele frequency: 2.545047337880485e-5
allele num: 117876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1966G>A
  hgvsp: ENSP00000451558.1:p.Val656Met
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6134G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2473G>A
  hgvsp: ENSP00000353401.3:p.Val825Met
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2440G>A
  hgvsp: ENSP00000292535.7:p.Val814Met
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6134G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6134G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6134G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2134G>A
  hgvsp: ENSP00000450125.2:p.Val712Met
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2272G>A
  hgvsp: ENSP00000447373.2:p.Val758Met
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6134G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2374G>A
  hgvsp: ENSP00000446630.2:p.Val792Met
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6134G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6134G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10884
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val825Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

7-101845024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845024
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845024
    reference: chr 7
allele count: 6
allele frequency: 5.098745708555695e-5
allele num: 117676
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2480G>A
  hgvsp: ENSP00000353401.3:p.Arg827His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2141G>A
  hgvsp: ENSP00000450125.2:p.Arg714His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6141G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6141G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1973G>A
  hgvsp: ENSP00000451558.1:p.Arg658His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6141G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2447G>A
  hgvsp: ENSP00000292535.7:p.Arg816His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2381G>A
  hgvsp: ENSP00000446630.2:p.Arg794His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2279G>A
  hgvsp: ENSP00000447373.2:p.Arg760His
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6141G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6141G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6141G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6141G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10658
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15364
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6641
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg827His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

7-101845028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845028
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845028
    reference: chr 7
allele count: 26
allele frequency: 2.208330502140382e-4
allele num: 117736
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2484C>T
  hgvsp: ENST00000360264.3:c.2484C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2385C>T
  hgvsp: ENST00000549414.2:c.2385C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2283C>T
  hgvsp: ENST00000550008.2:c.2283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2145C>T
  hgvsp: ENST00000546411.2:c.2145C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2451C>T
  hgvsp: ENST00000292535.7:c.2451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6145C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1977C>T
  hgvsp: ENST00000556210.1:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11345
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15258
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser828Ser
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

7-101845029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845029
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845029
    reference: chr 7
allele count: 4
allele frequency: 3.39397230518599e-5
allele num: 117856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6146G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6146G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2452G>A
  hgvsp: ENSP00000292535.7:p.Gly818Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6146G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1978G>A
  hgvsp: ENSP00000451558.1:p.Gly660Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2485G>A
  hgvsp: ENSP00000353401.3:p.Gly829Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6146G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2284G>A
  hgvsp: ENSP00000447373.2:p.Gly762Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2146G>A
  hgvsp: ENSP00000450125.2:p.Gly716Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6146G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2386G>A
  hgvsp: ENSP00000446630.2:p.Gly796Ser
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6146G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6146G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly829Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-101845034-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845034
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845034
    reference: chr 7
allele count: 3
allele frequency: 2.543795682330795e-5
allele num: 117934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1983C>G
  hgvsp: ENST00000556210.1:c.1983C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6151C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2391C>G
  hgvsp: ENST00000549414.2:c.2391C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2151C>G
  hgvsp: ENST00000546411.2:c.2151C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2490C>G
  hgvsp: ENST00000360264.3:c.2490C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6151C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2289C>G
  hgvsp: ENST00000550008.2:c.2289C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6151C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6151C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6151C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2457C>G
  hgvsp: ENST00000292535.7:c.2457C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6151C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6151C>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala830Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

7-101845035-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845035
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845035
    reference: chr 7
allele count: 2
allele frequency: 1.69618020218468e-5
allele num: 117912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6152T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.1984T>C
  hgvsp: ENSP00000451558.1:p.Trp662Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6152T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2290T>C
  hgvsp: ENSP00000447373.2:p.Trp764Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2152T>C
  hgvsp: ENSP00000450125.2:p.Trp718Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6152T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2458T>C
  hgvsp: ENSP00000292535.7:p.Trp820Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6152T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6152T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2392T>C
  hgvsp: ENSP00000446630.2:p.Trp798Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2491T>C
  hgvsp: ENSP00000353401.3:p.Trp831Arg
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6152T>C
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6152T>C
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp831Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-101845055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845055
    reference: chr 7
allele count: 1
allele frequency: 8.478312476684641e-6
allele num: 117948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6172C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6172C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2004C>T
  hgvsp: ENST00000556210.1:c.2004C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6172C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6172C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2310C>T
  hgvsp: ENST00000550008.2:c.2310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2478C>T
  hgvsp: ENST00000292535.7:c.2478C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2172C>T
  hgvsp: ENST00000546411.2:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6172C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2412C>T
  hgvsp: ENST00000549414.2:c.2412C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6172C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2511C>T
  hgvsp: ENST00000360264.3:c.2511C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6172C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15145
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser837Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

7-101845056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845056
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845056
    reference: chr 7
allele count: 7
allele frequency: 5.931700703330226e-5
allele num: 118010
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2512G>A
  hgvsp: ENSP00000353401.3:p.Ala838Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2311G>A
  hgvsp: ENSP00000447373.2:p.Ala771Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6173G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2479G>A
  hgvsp: ENSP00000292535.7:p.Ala827Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6173G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6173G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2173G>A
  hgvsp: ENSP00000450125.2:p.Ala725Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6173G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2005G>A
  hgvsp: ENSP00000451558.1:p.Ala669Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2413G>A
  hgvsp: ENSP00000446630.2:p.Ala805Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6173G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6173G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6173G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10762
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11923
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala838Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

7-101845058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845058
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845058
    reference: chr 7
allele count: 1
allele frequency: 8.479031355457952e-6
allele num: 117938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2415G>A
  hgvsp: ENST00000549414.2:c.2415G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6175G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6175G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2175G>A
  hgvsp: ENST00000546411.2:c.2175G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2007G>A
  hgvsp: ENST00000556210.1:c.2007G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2481G>A
  hgvsp: ENST00000292535.7:c.2481G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2313G>A
  hgvsp: ENST00000550008.2:c.2313G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6175G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6175G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6175G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2514G>A
  hgvsp: ENST00000360264.3:c.2514G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6175G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6175G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10841
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala838Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

7-101845059-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845059
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845059
    reference: chr 7
allele count: 1
allele frequency: 8.470986869970351e-6
allele num: 118050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2176G>T
  hgvsp: ENSP00000450125.2:p.Val726Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2008G>T
  hgvsp: ENSP00000451558.1:p.Val670Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6176G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2314G>T
  hgvsp: ENSP00000447373.2:p.Val772Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6176G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6176G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6176G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2482G>T
  hgvsp: ENSP00000292535.7:p.Val828Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6176G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2515G>T
  hgvsp: ENSP00000353401.3:p.Val839Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2416G>T
  hgvsp: ENSP00000446630.2:p.Val806Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6176G>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6176G>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val839Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

7-101845064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845064
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845064
    reference: chr 7
allele count: 12
allele frequency: 1.016552869220473e-4
allele num: 118046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2319G>A
  hgvsp: ENST00000550008.2:c.2319G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2181G>A
  hgvsp: ENST00000546411.2:c.2181G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2013G>A
  hgvsp: ENST00000556210.1:c.2013G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6181G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2487G>A
  hgvsp: ENST00000292535.7:c.2487G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6181G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6181G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6181G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2421G>A
  hgvsp: ENST00000549414.2:c.2421G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2520G>A
  hgvsp: ENST00000360264.3:c.2520G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6181G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6181G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6181G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15254
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln840Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

7-101845066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845066
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845066
    reference: chr 7
allele count: 21
allele frequency: 1.779238824685668e-4
allele num: 118028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6183C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6183C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6183C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6183C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2423C>T
  hgvsp: ENSP00000446630.2:p.Pro808Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2321C>T
  hgvsp: ENSP00000447373.2:p.Pro774Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2489C>T
  hgvsp: ENSP00000292535.7:p.Pro830Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2522C>T
  hgvsp: ENSP00000353401.3:p.Pro841Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6183C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2015C>T
  hgvsp: ENSP00000451558.1:p.Pro672Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2183C>T
  hgvsp: ENSP00000450125.2:p.Pro728Leu
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6183C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6183C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10989
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15350
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Pro841Leu
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

7-101845067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845067
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845067
    reference: chr 7
allele count: 7
allele frequency: 5.930695585868e-5
allele num: 118030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2016G>A
  hgvsp: ENST00000556210.1:c.2016G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2184G>A
  hgvsp: ENST00000546411.2:c.2184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2424G>A
  hgvsp: ENST00000549414.2:c.2424G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2490G>A
  hgvsp: ENST00000292535.7:c.2490G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2322G>A
  hgvsp: ENST00000550008.2:c.2322G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6184G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6184G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6184G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2523G>A
  hgvsp: ENST00000360264.3:c.2523G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6184G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6184G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6184G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6184G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11058
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro841Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

7-101845069-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845069
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845069
    reference: chr 7
allele count: 1
allele frequency: 8.462671157524161e-6
allele num: 118166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2492A>G
  hgvsp: ENSP00000292535.7:p.Glu831Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6186A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2324A>G
  hgvsp: ENSP00000447373.2:p.Glu775Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6186A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2426A>G
  hgvsp: ENSP00000446630.2:p.Glu809Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6186A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2018A>G
  hgvsp: ENSP00000451558.1:p.Glu673Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2186A>G
  hgvsp: ENSP00000450125.2:p.Glu729Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2525A>G
  hgvsp: ENSP00000353401.3:p.Glu842Gly
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6186A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6186A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6186A>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6186A>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu842Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-101845080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845080
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845080
    reference: chr 7
allele count: 2
allele frequency: 1.692448295704566e-5
allele num: 118172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2029G>A
  hgvsp: ENSP00000451558.1:p.Ala677Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2503G>A
  hgvsp: ENSP00000292535.7:p.Ala835Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6197G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6197G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2335G>A
  hgvsp: ENSP00000447373.2:p.Ala779Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2437G>A
  hgvsp: ENSP00000446630.2:p.Ala813Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2536G>A
  hgvsp: ENSP00000353401.3:p.Ala846Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6197G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6197G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2197G>A
  hgvsp: ENSP00000450125.2:p.Ala733Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6197G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6197G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6197G>A
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala846Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-101845082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845082
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845082
    reference: chr 7
allele count: 1
allele frequency: 8.467400508044031e-6
allele num: 118100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2505C>T
  hgvsp: ENST00000292535.7:c.2505C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6199C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6199C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6199C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2337C>T
  hgvsp: ENST00000550008.2:c.2337C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6199C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2538C>T
  hgvsp: ENST00000360264.3:c.2538C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6199C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2031C>T
  hgvsp: ENST00000556210.1:c.2031C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2199C>T
  hgvsp: ENST00000546411.2:c.2199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2439C>T
  hgvsp: ENST00000549414.2:c.2439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6199C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6199C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala846Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-101845083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845083
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845083
    reference: chr 7
allele count: 2
allele frequency: 1.692734782314307e-5
allele num: 118152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2032G>A
  hgvsp: ENSP00000451558.1:p.Ala678Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2200G>A
  hgvsp: ENSP00000450125.2:p.Ala734Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2539G>A
  hgvsp: ENSP00000353401.3:p.Ala847Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2440G>A
  hgvsp: ENSP00000446630.2:p.Ala814Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2338G>A
  hgvsp: ENSP00000447373.2:p.Ala780Thr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6200G>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2506G>A
  hgvsp: ENSP00000292535.7:p.Ala836Thr
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala847Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

7-101845089-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845089
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845089
    reference: chr 7
allele count: 2
allele frequency: 1.691646648847989e-5
allele num: 118228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2038T>G
  hgvsp: ENSP00000451558.1:p.Ser680Ala
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6206T>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6206T>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2206T>G
  hgvsp: ENSP00000450125.2:p.Ser736Ala
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6206T>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2344T>G
  hgvsp: ENSP00000447373.2:p.Ser782Ala
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2545T>G
  hgvsp: ENSP00000353401.3:p.Ser849Ala
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6206T>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2512T>G
  hgvsp: ENSP00000292535.7:p.Ser838Ala
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6206T>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2446T>G
  hgvsp: ENSP00000446630.2:p.Ser816Ala
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6206T>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6206T>G
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser849Ala
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-101845090-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845090
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845090
    reference: chr 7
allele count: 2
allele frequency: 1.691246110133947e-5
allele num: 118256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2447C>A
  hgvsp: ENSP00000446630.2:p.Ser816Tyr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2207C>A
  hgvsp: ENSP00000450125.2:p.Ser736Tyr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2546C>A
  hgvsp: ENSP00000353401.3:p.Ser849Tyr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2345C>A
  hgvsp: ENSP00000447373.2:p.Ser782Tyr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2039C>A
  hgvsp: ENSP00000451558.1:p.Ser680Tyr
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6207C>A
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2513C>A
  hgvsp: ENSP00000292535.7:p.Ser838Tyr
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser849Tyr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

7-101845091-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845091
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845091
    reference: chr 7
allele count: 2
allele frequency: 1.691904238220117e-5
allele num: 118210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2208C>G
  hgvsp: ENST00000546411.2:c.2208C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2448C>G
  hgvsp: ENST00000549414.2:c.2448C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2346C>G
  hgvsp: ENST00000550008.2:c.2346C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2514C>G
  hgvsp: ENST00000292535.7:c.2514C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6208C>G
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2547C>G
  hgvsp: ENST00000360264.3:c.2547C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2040C>G
  hgvsp: ENST00000556210.1:c.2040C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser849Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-101845091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 101845091
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 101845091
    reference: chr 7
allele count: 1
allele frequency: 8.459521191100584e-6
allele num: 118210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000450125
  ensembl transcript: ENST00000546411
  gene symbol: CUX1
  hgvsc: ENST00000546411.2:c.2208C>T
  hgvsp: ENST00000546411.2:c.2208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000451558
  ensembl transcript: ENST00000556210
  gene symbol: CUX1
  hgvsc: ENST00000556210.1:c.2040C>T
  hgvsp: ENST00000556210.1:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292538
  ensembl transcript: ENST00000292538
  gene symbol: CUX1
  hgvsc: ENST00000292538.4:c.1255+6208C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000446630
  ensembl transcript: ENST00000549414
  gene symbol: CUX1
  hgvsc: ENST00000549414.2:c.2448C>T
  hgvsp: ENST00000549414.2:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000377410
  ensembl transcript: ENST00000393824
  gene symbol: CUX1
  hgvsc: ENST00000393824.3:c.1138+6208C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000558836
  gene symbol: CUX1
  hgvsc: ENST00000558836.1:n.1361+6208C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000353401
  ensembl transcript: ENST00000360264
  gene symbol: CUX1
  hgvsc: ENST00000360264.3:c.2547C>T
  hgvsp: ENST00000360264.3:c.2547C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000292535
  ensembl transcript: ENST00000292535
  gene symbol: CUX1
  hgvsc: ENST00000292535.7:c.2514C>T
  hgvsp: ENST00000292535.7:c.2514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000409745
  ensembl transcript: ENST00000425244
  gene symbol: CUX1
  hgvsc: ENST00000425244.2:c.1117+6208C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000447373
  ensembl transcript: ENST00000550008
  gene symbol: CUX1
  hgvsc: ENST00000550008.2:c.2346C>T
  hgvsp: ENST00000550008.2:c.2346C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000449371
  ensembl transcript: ENST00000547394
  gene symbol: CUX1
  hgvsc: ENST00000547394.2:c.1207+6208C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl transcript: ENST00000560541
  gene symbol: CUX1
  hgvsc: ENST00000560541.1:n.1843+6208C>T
  variant of: http://identifiers.org/hgnc/2557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000257923
  ensembl protein: ENSP00000414091
  ensembl transcript: ENST00000437600
  gene symbol: CUX1
  hgvsc: ENST00000437600.4:c.1249+6208C>T
  variant of: http://identifiers.org/hgnc/2557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser849Ser
num of homozygotes: 0
population: Other
reference allele: C

GenotypeDepth
all individuals: 1428
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9681
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32529
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

DP
type: SiteQuality
SIO_000300: 5.113482e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.297e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeDepth
all individuals: 7910
bin: 2.75e1
variant carriers: 66

GenotypeDepth
all individuals: 6103
bin: 3.25e1
variant carriers: 109

GenotypeDepth
all individuals: 249
bin: 8.75e1
variant carriers: 238

GenotypeDepth
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GenotypeDepth
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variant carriers: 231

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 1849
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 1974
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10679
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 958
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 38748
bin: 9.75e1
variant carriers: 35068

European (Finnish)
type: Population
allele count: 2293
allele frequency: 3.467937084089534e-1
allele num: 6612
num of homozygotes: 393

Latino
type: Population
allele count: 3578
allele frequency: 3.090343755398169e-1
allele num: 11578
num of homozygotes: 557

East Asian
type: Population
allele count: 705
allele frequency: 8.155946321147617e-2
allele num: 8644
num of homozygotes: 36

Other
type: Population
allele count: 311
allele frequency: 3.42511013215859e-1
allele num: 908
num of homozygotes: 50

South Asian
type: Population
allele count: 6127
allele frequency: 3.710634689922481e-1
allele num: 16512
num of homozygotes: 1175

European (Non-Finnish)
type: Population
allele count: 25907
allele frequency: 3.882710868652958e-1
allele num: 66724
num of homozygotes: 5017

African
type: Population
allele count: 4415
allele frequency: 4.245192307692308e-1
allele num: 10400
num of homozygotes: 943

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
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SIO_000300: 8.356485e6

QD
type: SiteQuality
SIO_000300: 1.605e1

VQSLOD
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SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.79e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.24e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8516
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GenotypeQuality
all individuals: 25108
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

QD
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MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

MQ
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SIO_000300: 5.897e1

VQSLOD
type: SiteQuality
SIO_000300: -4.837e-1

DP
type: SiteQuality
SIO_000300: 2.002667e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25108
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GenotypeQuality
all individuals: 8516
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 2.00252e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 175
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variant carriers: 0

GenotypeDepth
all individuals: 55
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4815
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GenotypeQuality
all individuals: 27
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.268e1

DP
type: SiteQuality
SIO_000300: 2.002567e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -3.133e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 25
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.905e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
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QD
type: SiteQuality
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DP
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VQSLOD
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SIO_000300: -2.375e0

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
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SIO_000300: -2.116e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 155
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
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Other
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Other
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East Asian
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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allele num: 11572
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East Asian
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South Asian
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European (Finnish)
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Other
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DP
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InbreedingCoeff
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QD
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FS
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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Latino
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European (Finnish)
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num of homozygotes: 0

Other
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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allele num: 16508
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African
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Other
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European (Finnish)
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East Asian
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11564
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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African
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South Asian
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.507056633235242e-5
allele num: 66604
num of homozygotes: 0

BaseQRankSum
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MQRankSum
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SIO_000300: -2.92e-1

QD
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InbreedingCoeff
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SIO_000300: -4.0e-4

MQ
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SIO_000300: 5.971e1

FS
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SIO_000300: 6.919999999999999e-1

VQSLOD
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SIO_000300: 7.3e-1

ReadPosRankSum
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SIO_000300: 1.43e0

ClippingRankSum
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SIO_000300: 2.87e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 1998
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.007088364269839e-5
allele num: 66588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
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SIO_000300: 1.83e0

InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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MQRankSum
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QD
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SIO_000300: 1.259e1

ClippingRankSum
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SIO_000300: -8.34e-1

VQSLOD
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SIO_000300: 1.46e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 4.06e-1

QD
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SIO_000300: 1.411e1

DP
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SIO_000300: 1.983229e6

BaseQRankSum
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SIO_000300: -6.74e0

InbreedingCoeff
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SIO_000300: -5.0e-4

MQ
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SIO_000300: 5.935e1

FS
type: SiteQuality
SIO_000300: 1.716e0

VQSLOD
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SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.352285362262223e-4
allele num: 66554
num of homozygotes: 0

European (Finnish)
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allele count: 8
allele frequency: 1.210653753026634e-3
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
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SIO_000300: -1.52e-1

DP
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SIO_000300: 1.981808e6

MQRankSum
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SIO_000300: 3.7e-2

InbreedingCoeff
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SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

ReadPosRankSum
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SIO_000300: -1.23e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

BaseQRankSum
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SIO_000300: -4.947e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.935995302407516e-4
allele num: 10218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.013e0

VQSLOD
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ClippingRankSum
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QD
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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SIO_000300: 5.978e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.940357852882704e-5
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.767e0

DP
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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East Asian
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European (Non-Finnish)
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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South Asian
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East Asian
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Latino
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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East Asian
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Other
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FS
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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MQ
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MQRankSum
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DP
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FS
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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FS
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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DP
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ReadPosRankSum
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DP
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QD
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FS
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 3
allele frequency: 3.120449344705637e-4
allele num: 9614
num of homozygotes: 0

Latino
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allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.532238293699436e-5
allele num: 65264
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European (Finnish)
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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MQRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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num of homozygotes: 0

African
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allele frequency: 1.039933444259567e-4
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South Asian
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Latino
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East Asian
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.537751806858373e-5
allele num: 65030
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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African
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allele frequency: 0.0e0
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FS
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DP
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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Other
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BaseQRankSum
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MQRankSum
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DP
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Other
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East Asian
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Latino
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European (Non-Finnish)
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1956
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537941004583064e-5
allele num: 65022
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -2.38e-1

InbreedingCoeff
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MQRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -3.501e0

MQ
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SIO_000300: 5.962e1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544830995489093e-5
allele num: 64732
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

FS
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InbreedingCoeff
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SIO_000300: -1.7e-3

VQSLOD
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BaseQRankSum
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SIO_000300: 1.93e0

ReadPosRankSum
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SIO_000300: -9.29e-1

DP
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SIO_000300: 1.871554e6

ClippingRankSum
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SIO_000300: 1.18e0

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.595e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.049538203190596e-4
allele num: 9528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64776
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.22e-1

InbreedingCoeff
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DP
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SIO_000300: 1.871896e6

FS
type: SiteQuality
SIO_000300: 2.463e0

ClippingRankSum
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SIO_000300: 9.22e-1

ReadPosRankSum
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SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63770
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.854596e6

VQSLOD
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MQRankSum
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SIO_000300: 0.0e0

InbreedingCoeff
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QD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 8.9821e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.09e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

ClippingRankSum
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SIO_000300: 8.04e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 17
allele frequency: 2.665830327740317e-4
allele num: 63770
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele count: 6
allele frequency: 6.462731581214993e-4
allele num: 9284
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.619695497246518e-4
allele num: 6174
num of homozygotes: 0

South Asian
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East Asian
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MQRankSum
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 64652
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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European (Finnish)
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allele count: 0
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East Asian
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MQRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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MQRankSum
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DP
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 64674
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African
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Latino
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South Asian
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East Asian
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Other
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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num of homozygotes: 0

European (Finnish)
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East Asian
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Latino
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Other
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16470
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Non-Finnish)
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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FS
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Other
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.085035806181604e-4
allele num: 64514
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.291286912139992e-4
allele num: 16458
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 7.04390702042733e-4
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.584786053882726e-4
allele num: 6310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

DP
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SIO_000300: 1.800825e6

InbreedingCoeff
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FS
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SIO_000300: 5.21e-1

BaseQRankSum
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SIO_000300: -5.43e-1

ClippingRankSum
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SIO_000300: -1.3e-2

QD
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SIO_000300: 1.161e1

MQ
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SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2064
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variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.429248147698287e-4
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
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SIO_000300: 5.649999999999999e-1

BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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FS
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MQ
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SIO_000300: 5.922e1

QD
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SIO_000300: 1.26e1

InbreedingCoeff
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SIO_000300: -1.3e-3

ReadPosRankSum
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SIO_000300: -5.580000000000001e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.521953510213665e-4
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 1.801869e6

QD
type: SiteQuality
SIO_000300: 1.13e1

VQSLOD
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SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 602
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.062e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.803237e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
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SIO_000300: 2.01e0

VQSLOD
type: SiteQuality
SIO_000300: -2.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.423e0

QD
type: SiteQuality
SIO_000300: 1.051e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546933976857868e-5
allele num: 64644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.805178e6

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025430680885972e-4
allele num: 9752
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.770391159445712e-5
allele num: 11402
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033980582524272e-4
allele num: 16480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.16e-1

FS
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DP
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: 2.67e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547125440930751e-5
allele num: 64636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -1.5e-3

BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 64702
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 9.275290625772941e-5
allele num: 64688
num of homozygotes: 0

Other
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South Asian
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East Asian
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African
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Latino
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European (Finnish)
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MQRankSum
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MQ
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DP
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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allele frequency: 2.629733520336606e-4
allele num: 11408
num of homozygotes: 0

Other
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African
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allele frequency: 1.841997544003275e-3
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European (Non-Finnish)
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South Asian
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 11420
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East Asian
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Other
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European (Non-Finnish)
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allele num: 64658
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African
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European (Finnish)
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South Asian
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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Other
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East Asian
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African
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European (Non-Finnish)
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South Asian
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FS
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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MQ
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.019575856443719e-4
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64670
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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ReadPosRankSum
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QD
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FS
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VQSLOD
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.090807937194783e-5
allele num: 64708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 1.828766e6

MQ
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ReadPosRankSum
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SIO_000300: 1.08e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.090234857849197e-5
allele num: 64720
num of homozygotes: 0

South Asian
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allele count: 0
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BaseQRankSum
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QD
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.6e-2

MQ
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SIO_000300: 5.748e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
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allele num: 64756
num of homozygotes: 0

East Asian
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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DP
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0