6-134492130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492130
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492130
    reference: chr 6
allele count: 15
allele frequency: 1.237562496906094e-4
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+31G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.388G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+31G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+31G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+31G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+31G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3730G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+31G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1104G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+31G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9460
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

6-134492131-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492131
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492131
    reference: chr 6
allele count: 3
allele frequency: 2.475901228047009e-5
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.387C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1103C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3729C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+30C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/6-134492134-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492134
    reference: chr 6
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3726G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1100G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+27G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.384G>T
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

6-134492134-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492134
    reference: chr 6
allele count: 3
allele frequency: 2.475288371095233e-5
allele num: 121198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3726G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1100G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+27G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+27G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.384G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+27G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+27G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+27G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+27G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+27G>C
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

6-134492134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492134
    reference: chr 6
allele count: 6
allele frequency: 4.950576742190465e-5
allele num: 121198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+27G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1100G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+27G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.384G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3726G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+27G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+27G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+27G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+27G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+27G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

6-134492135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492135
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492135
    reference: chr 6
allele count: 2
allele frequency: 1.650519088253256e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+26G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3725G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+26G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.383G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+26G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1099G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+26G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+26G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+26G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+26G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-134492135-CAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492135
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492132
    reference: chr 6
allele count: 5
allele frequency: 4.126297720633139e-5
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+23_1122+25delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+23_906+25delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.380_382delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+23_1038+25delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+23_622+25delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+23_1323+25delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+23_1008+25delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1096_1098delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3722_3724delCCT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+23_1080+25delCCT
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: CAGG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

6-134492140-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492140
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492140
    reference: chr 6
allele count: 3
allele frequency: 2.47496163809461e-5
allele num: 121214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1094C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3720C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+21C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.378C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+21C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+21C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+21C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+21C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+21C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+21C>G
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

6-134492144-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492144
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492143
    reference: chr 6
allele count: 20
allele frequency: 1.65016501650165e-4
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1089delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.373delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3715delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+16delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+16delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+16delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+16delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+16delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+16delC
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+16delC
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23933
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 11113
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-134492149-AACATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492149
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492144
    reference: chr 6
allele count: 8
allele frequency: 6.6006600660066e-5
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+7_1323+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+7_1080+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1080_1084delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+7_1008+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+7_1122+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.364_368delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+7_622+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+7_1038+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+7_906+11delGATGT
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3706_3710delGATGT
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1323+7_1323+11delGATGT
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: AACATC
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-134492152-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492152
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492152
    reference: chr 6
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1082T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+9T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+9T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3708T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+9T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+9T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.366T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+9T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+9T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+9T>A
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

6-134492153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492153
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492153
    reference: chr 6
allele count: 2
allele frequency: 1.650192247396822e-5
allele num: 121198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+8A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+8A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.365A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+8A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+8A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+8A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+8A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1081A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3707A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+8A>G
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1323+8A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-134492155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492155
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492155
    reference: chr 6
allele count: 11
allele frequency: 9.077705156136529e-5
allele num: 121176
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1323+6T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3705T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1038+6T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.906+6T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1122+6T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1079T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.363T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1080+6T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.1008+6T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.622+6T>C
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9501
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1323+6T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

6-134492179-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492179
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492179
    reference: chr 6
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.339C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1062C>T
  hgvsp: ENST00000413996.3:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1305C>T
  hgvsp: ENST00000367858.5:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.990C>T
  hgvsp: ENST00000367857.5:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1055C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1020C>T
  hgvsp: ENST00000237305.7:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1104C>T
  hgvsp: ENST00000528577.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.888C>T
  hgvsp: ENST00000475719.2:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.604C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3681C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu435Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-134492183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492183
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492183
    reference: chr 6
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.986G>A
  hgvsp: ENSP00000356831.5:p.Arg329Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3677G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.600G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1301G>A
  hgvsp: ENSP00000356832.5:p.Arg434Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1058G>A
  hgvsp: ENSP00000396242.3:p.Arg353Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.335G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.884G>A
  hgvsp: ENSP00000434302.1:p.Arg295Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1100G>A
  hgvsp: ENSP00000434450.1:p.Arg367Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1051G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1016G>A
  hgvsp: ENSP00000237305.7:p.Arg339Gln
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg434Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

6-134492184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492184
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492184
    reference: chr 6
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.883C>T
  hgvsp: ENSP00000434302.1:p.Arg295Trp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.334C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.985C>T
  hgvsp: ENSP00000356831.5:p.Arg329Trp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1099C>T
  hgvsp: ENSP00000434450.1:p.Arg367Trp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3676C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1057C>T
  hgvsp: ENSP00000396242.3:p.Arg353Trp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1300C>T
  hgvsp: ENSP00000356832.5:p.Arg434Trp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1050C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.1015C>T
  hgvsp: ENSP00000237305.7:p.Arg339Trp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.599C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg434Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

6-134492210-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492210
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492210
    reference: chr 6
allele count: 8
allele frequency: 6.59152330103487e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1274G>A
  hgvsp: ENSP00000356832.5:p.Gly425Asp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1073G>A
  hgvsp: ENSP00000434450.1:p.Gly358Asp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1024G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.857G>A
  hgvsp: ENSP00000434302.1:p.Gly286Asp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.959G>A
  hgvsp: ENSP00000356831.5:p.Gly320Asp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1031G>A
  hgvsp: ENSP00000396242.3:p.Gly344Asp
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3650G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.308G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.573G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.989G>A
  hgvsp: ENSP00000237305.7:p.Gly330Asp
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly425Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

6-134492221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492221
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492221
    reference: chr 6
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1020C>T
  hgvsp: ENST00000413996.3:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.978C>T
  hgvsp: ENST00000237305.7:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.297C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.562C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1263C>T
  hgvsp: ENST00000367858.5:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.948C>T
  hgvsp: ENST00000367857.5:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.846C>T
  hgvsp: ENST00000475719.2:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1013C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1062C>T
  hgvsp: ENST00000528577.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3639C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His421His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

6-134492229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492229
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492229
    reference: chr 6
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.289G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1255G>A
  hgvsp: ENSP00000356832.5:p.Ala419Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1012G>A
  hgvsp: ENSP00000396242.3:p.Ala338Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.970G>A
  hgvsp: ENSP00000237305.7:p.Ala324Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.940G>A
  hgvsp: ENSP00000356831.5:p.Ala314Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3631G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1054G>A
  hgvsp: ENSP00000434450.1:p.Ala352Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.838G>A
  hgvsp: ENSP00000434302.1:p.Ala280Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.554G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1005G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala419Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-134492230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492230
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492230
    reference: chr 6
allele count: 6
allele frequency: 4.942176534545814e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3630C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.288C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1254C>T
  hgvsp: ENST00000367858.5:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.553C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1053C>T
  hgvsp: ENST00000528577.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.837C>T
  hgvsp: ENST00000475719.2:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.969C>T
  hgvsp: ENST00000237305.7:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.1004C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1011C>T
  hgvsp: ENST00000413996.3:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.939C>T
  hgvsp: ENST00000367857.5:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser418Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

6-134492240-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492240
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492240
    reference: chr 6
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.827T>A
  hgvsp: ENSP00000434302.1:p.Ile276Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.278T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1043T>A
  hgvsp: ENSP00000434450.1:p.Ile348Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.959T>A
  hgvsp: ENSP00000237305.7:p.Ile320Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1001T>A
  hgvsp: ENSP00000396242.3:p.Ile334Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1244T>A
  hgvsp: ENSP00000356832.5:p.Ile415Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.543T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.929T>A
  hgvsp: ENSP00000356831.5:p.Ile310Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3620T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.994T>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile415Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

6-134492241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492241
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492241
    reference: chr 6
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.1000A>G
  hgvsp: ENSP00000396242.3:p.Ile334Val
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3619A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1243A>G
  hgvsp: ENSP00000356832.5:p.Ile415Val
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.826A>G
  hgvsp: ENSP00000434302.1:p.Ile276Val
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.928A>G
  hgvsp: ENSP00000356831.5:p.Ile310Val
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.542A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.958A>G
  hgvsp: ENSP00000237305.7:p.Ile320Val
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.993A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1042A>G
  hgvsp: ENSP00000434450.1:p.Ile348Val
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.277A>G
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile415Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-134492263-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492263
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492266
    reference: chr 6
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.905_906insAAA
  hgvsp: ENSP00000356831.5:p.Lys302dup
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3596_3597insAAA
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.254_255insAAA
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.935_936insAAA
  hgvsp: ENSP00000237305.7:p.Lys312dup
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.519_520insAAA
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1019_1020insAAA
  hgvsp: ENSP00000434450.1:p.Lys340dup
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.551_552insAAA
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1220_1221insAAA
  hgvsp: ENSP00000356832.5:p.Lys407dup
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.970_971insAAA
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.977_978insAAA
  hgvsp: ENSP00000396242.3:p.Lys326dup
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.803_804insAAA
  hgvsp: ENSP00000434302.1:p.Lys268dup
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Lys407dup
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

6-134492266-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492266
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492266
    reference: chr 6
allele count: 5514
allele frequency: 6.024385980246482e-2
allele num: 91528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1017C>A
  hgvsp: ENSP00000434450.1:p.Asn339Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.933C>A
  hgvsp: ENSP00000237305.7:p.Asn311Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.968C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.975C>A
  hgvsp: ENSP00000396242.3:p.Asn325Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.517C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1218C>A
  hgvsp: ENSP00000356832.5:p.Asn406Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.549C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3594C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.903C>A
  hgvsp: ENSP00000356831.5:p.Asn301Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.801C>A
  hgvsp: ENSP00000434302.1:p.Asn267Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.252C>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 6.25e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 9.75e1
  variant carriers: 2966
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 7.25e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 5.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 4.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 4.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 6.75e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 8.75e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 9.25e1
  variant carriers: 545
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 8.25e1
  variant carriers: 437
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 5.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
hgvs: p.Asn406Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS

6-134492268-TCAGAATG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492268
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492261
    reference: chr 6
allele count: 120
allele frequency: 9.885818792941526e-4
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.792_798delCATTCTG
  hgvsp: ENSP00000434302.1:p.Asn264LysfsTer7
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3585_3591delCATTCTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.966_972delCATTCTG
  hgvsp: ENSP00000396242.3:p.Asn322LysfsTer7
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.540_546delCATTCTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.959_965delCATTCTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1209_1215delCATTCTG
  hgvsp: ENSP00000356832.5:p.Asn403LysfsTer7
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.508_514delCATTCTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.894_900delCATTCTG
  hgvsp: ENSP00000356831.5:p.Asn298LysfsTer7
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1008_1014delCATTCTG
  hgvsp: ENSP00000434450.1:p.Asn336LysfsTer7
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.243_249delCATTCTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.924_930delCATTCTG
  hgvsp: ENSP00000237305.7:p.Asn308LysfsTer7
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 9.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn403LysfsTer7
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: TCAGAATG
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

6-134492269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492269
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492269
    reference: chr 6
allele count: 278
allele frequency: 2.339791607049674e-3
allele num: 118814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1215G>A
  hgvsp: ENST00000367858.5:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.798G>A
  hgvsp: ENST00000475719.2:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.965G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.972G>A
  hgvsp: ENST00000413996.3:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.930G>A
  hgvsp: ENST00000237305.7:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.900G>A
  hgvsp: ENST00000367857.5:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.249G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1014G>A
  hgvsp: ENST00000528577.1:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.546G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3591G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.514G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 9.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
hgvs: p.Leu405Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/6-134492270-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492270
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492270
    reference: chr 6
allele count: 6
allele frequency: 4.958349861166204e-5
allele num: 121008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.971T>G
  hgvsp: ENSP00000396242.3:p.Leu324Arg
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.964T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.899T>G
  hgvsp: ENSP00000356831.5:p.Leu300Arg
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1214T>G
  hgvsp: ENSP00000356832.5:p.Leu405Arg
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.929T>G
  hgvsp: ENSP00000237305.7:p.Leu310Arg
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1013T>G
  hgvsp: ENSP00000434450.1:p.Leu338Arg
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.797T>G
  hgvsp: ENSP00000434302.1:p.Leu266Arg
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.513T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.248T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3590T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.545T>G
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu405Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

6-134492270-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492270
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492270
    reference: chr 6
allele count: 13
allele frequency: 1.074309136586011e-4
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.545T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.964T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.248T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.513T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3590T>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.899T>A
  hgvsp: ENSP00000356831.5:p.Leu300Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.929T>A
  hgvsp: ENSP00000237305.7:p.Leu310Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.971T>A
  hgvsp: ENSP00000396242.3:p.Leu324Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1214T>A
  hgvsp: ENSP00000356832.5:p.Leu405Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1013T>A
  hgvsp: ENSP00000434450.1:p.Leu338Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.797T>A
  hgvsp: ENSP00000434302.1:p.Leu266Gln
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu405Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-134492271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492271
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492271
    reference: chr 6
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1213C>T
  hgvsp: ENST00000367858.5:c.1213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1012C>T
  hgvsp: ENST00000528577.1:c.1012C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.928C>T
  hgvsp: ENST00000237305.7:c.928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.512C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.796C>T
  hgvsp: ENST00000475719.2:c.796C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.898C>T
  hgvsp: ENST00000367857.5:c.898C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.247C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.544C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3589C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.963C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.970C>T
  hgvsp: ENST00000413996.3:c.970C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu405Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-134492273-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492273
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492273
    reference: chr 6
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.542T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.926T>G
  hgvsp: ENSP00000237305.7:p.Ile309Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.245T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3587T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1211T>G
  hgvsp: ENSP00000356832.5:p.Ile404Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.968T>G
  hgvsp: ENSP00000396242.3:p.Ile323Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.961T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.794T>G
  hgvsp: ENSP00000434302.1:p.Ile265Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.896T>G
  hgvsp: ENSP00000356831.5:p.Ile299Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1010T>G
  hgvsp: ENSP00000434450.1:p.Ile337Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.510T>G
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile404Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

6-134492274-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492274
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492274
    reference: chr 6
allele count: 4
allele frequency: 3.297554863069035e-5
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.895A>T
  hgvsp: ENSP00000356831.5:p.Ile299Phe
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3586A>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.793A>T
  hgvsp: ENSP00000434302.1:p.Ile265Phe
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1009A>T
  hgvsp: ENSP00000434450.1:p.Ile337Phe
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.925A>T
  hgvsp: ENSP00000237305.7:p.Ile309Phe
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.244A>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.967A>T
  hgvsp: ENSP00000396242.3:p.Ile323Phe
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1210A>T
  hgvsp: ENSP00000356832.5:p.Ile404Phe
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.509A>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.541A>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.960A>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile404Phe
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-134492275-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492275
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492275
    reference: chr 6
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.966C>A
  hgvsp: ENSP00000396242.3:p.Asn322Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.792C>A
  hgvsp: ENSP00000434302.1:p.Asn264Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1209C>A
  hgvsp: ENSP00000356832.5:p.Asn403Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.540C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.924C>A
  hgvsp: ENSP00000237305.7:p.Asn308Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.894C>A
  hgvsp: ENSP00000356831.5:p.Asn298Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1008C>A
  hgvsp: ENSP00000434450.1:p.Asn336Lys
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.508C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3585C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.243C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.959C>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn403Lys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-134492278-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492278
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492278
    reference: chr 6
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.789C>A
  hgvsp: ENSP00000434302.1:p.Asp263Glu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.891C>A
  hgvsp: ENSP00000356831.5:p.Asp297Glu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.537C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.963C>A
  hgvsp: ENSP00000396242.3:p.Asp321Glu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3582C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1005C>A
  hgvsp: ENSP00000434450.1:p.Asp335Glu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.956C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1206C>A
  hgvsp: ENSP00000356832.5:p.Asp402Glu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.505C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.921C>A
  hgvsp: ENSP00000237305.7:p.Asp307Glu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.240C>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp402Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-134492280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492280
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492280
    reference: chr 6
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.787G>A
  hgvsp: ENSP00000434302.1:p.Asp263Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.535G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.919G>A
  hgvsp: ENSP00000237305.7:p.Asp307Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1003G>A
  hgvsp: ENSP00000434450.1:p.Asp335Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.238G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1204G>A
  hgvsp: ENSP00000356832.5:p.Asp402Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.889G>A
  hgvsp: ENSP00000356831.5:p.Asp297Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3580G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.961G>A
  hgvsp: ENSP00000396242.3:p.Asp321Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.503G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.954G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp402Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

6-134492281-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492281
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492281
    reference: chr 6
allele count: 5
allele frequency: 4.11868399808893e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.888C>T
  hgvsp: ENST00000367857.5:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.953C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1203C>T
  hgvsp: ENST00000367858.5:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.786C>T
  hgvsp: ENST00000475719.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.237C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.960C>T
  hgvsp: ENST00000413996.3:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3579C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.918C>T
  hgvsp: ENST00000237305.7:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.1002C>T
  hgvsp: ENST00000528577.1:c.1002C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.534C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.502C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr401Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

6-134492292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492292
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492292
    reference: chr 6
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.877G>A
  hgvsp: ENSP00000356831.5:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1192G>A
  hgvsp: ENSP00000356832.5:p.Ala398Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.491G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.949G>A
  hgvsp: ENSP00000396242.3:p.Ala317Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3568G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.226G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.991G>A
  hgvsp: ENSP00000434450.1:p.Ala331Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.942G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.523G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.775G>A
  hgvsp: ENSP00000434302.1:p.Ala259Thr
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.907G>A
  hgvsp: ENSP00000237305.7:p.Ala303Thr
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala398Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-134492294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492294
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492294
    reference: chr 6
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.521C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.940C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.224C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.989C>T
  hgvsp: ENSP00000434450.1:p.Thr330Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3566C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1190C>T
  hgvsp: ENSP00000356832.5:p.Thr397Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.875C>T
  hgvsp: ENSP00000356831.5:p.Thr292Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.905C>T
  hgvsp: ENSP00000237305.7:p.Thr302Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.947C>T
  hgvsp: ENSP00000396242.3:p.Thr316Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.489C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.773C>T
  hgvsp: ENSP00000434302.1:p.Thr258Ile
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr397Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-134492300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492300
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492300
    reference: chr 6
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.767G>A
  hgvsp: ENSP00000434302.1:p.Arg256Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.934G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.899G>A
  hgvsp: ENSP00000237305.7:p.Arg300Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3560G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1184G>A
  hgvsp: ENSP00000356832.5:p.Arg395Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.983G>A
  hgvsp: ENSP00000434450.1:p.Arg328Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.218G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.941G>A
  hgvsp: ENSP00000396242.3:p.Arg314Gln
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.515G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.483G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.869G>A
  hgvsp: ENSP00000356831.5:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg395Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-134492301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492301
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492301
    reference: chr 6
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.217C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.514C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1183C>T
  hgvsp: ENSP00000356832.5:p.Arg395Ter
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.868C>T
  hgvsp: ENSP00000356831.5:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.766C>T
  hgvsp: ENSP00000434302.1:p.Arg256Ter
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.898C>T
  hgvsp: ENSP00000237305.7:p.Arg300Ter
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.933C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.482C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.940C>T
  hgvsp: ENSP00000396242.3:p.Arg314Ter
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3559C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.982C>T
  hgvsp: ENSP00000434450.1:p.Arg328Ter
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg395Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-134492301-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492301
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492301
    reference: chr 6
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.933C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.940C>G
  hgvsp: ENSP00000396242.3:p.Arg314Gly
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3559C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.514C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.217C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.482C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1183C>G
  hgvsp: ENSP00000356832.5:p.Arg395Gly
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.766C>G
  hgvsp: ENSP00000434302.1:p.Arg256Gly
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.982C>G
  hgvsp: ENSP00000434450.1:p.Arg328Gly
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.898C>G
  hgvsp: ENSP00000237305.7:p.Arg300Gly
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.868C>G
  hgvsp: ENSP00000356831.5:p.Arg290Gly
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg395Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-134492314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492314
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492314
    reference: chr 6
allele count: 5
allele frequency: 4.12275928033114e-5
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.855G>A
  hgvsp: ENST00000367857.5:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.501G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.885G>A
  hgvsp: ENST00000237305.7:c.885G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.204G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.969G>A
  hgvsp: ENST00000528577.1:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1170G>A
  hgvsp: ENST00000367858.5:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.927G>A
  hgvsp: ENST00000413996.3:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.753G>A
  hgvsp: ENST00000475719.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.920G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.469G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3546G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1170G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

6-134492329-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492329
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492329
    reference: chr 6
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.751-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.925-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.499-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.918-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.883-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3531C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.467-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1168-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.967-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.853-13C>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.202-13C>G
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

6-134492332-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492332
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492332
    reference: chr 6
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.751-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.925-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.883-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.202-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.967-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.853-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3528T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.918-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.499-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.467-16T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1168-16T>C
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-134492366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492366
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492366
    reference: chr 6
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.202-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.853-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1168-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.967-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3494G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.925-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.918-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.467-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.751-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.499-50G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.883-50G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-134492726-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492726
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492726
    reference: chr 6
allele count: 1
allele frequency: 8.583396278239373e-6
allele num: 116504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.347T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3134T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+49T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+49T>C
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

6-134492728-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492728
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492728
    reference: chr 6
allele count: 1
allele frequency: 8.577212062991046e-6
allele num: 116588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.345T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3132T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+47T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+47T>C
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17441
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13994
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-134492732-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492732
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492732
    reference: chr 6
allele count: 1
allele frequency: 8.574417368339821e-6
allele num: 116626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3128A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.341A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+43A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+43A>G
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19782
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-134492735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492735
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492735
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 116762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.338C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3125C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+40C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+40C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

6-134492736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492736
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492736
    reference: chr 6
allele count: 1
allele frequency: 8.557247989046722e-6
allele num: 116860
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.337C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3124C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+39C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+39C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-134492739-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492739
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492739
    reference: chr 6
allele count: 1
allele frequency: 8.553441905022582e-6
allele num: 116912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3121G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.334G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+36G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+36G>C
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12959
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

6-134492742-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492742
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492741
    reference: chr 6
allele count: 85
allele frequency: 7.252064705480855e-4
allele num: 117208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.330delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3117delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+32delG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+32delG
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26493
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13511
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: GC
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-134492745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492745
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492745
    reference: chr 6
allele count: 1
allele frequency: 8.502678343678259e-6
allele num: 117610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3115C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.328C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+30C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+30C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-134492759-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492759
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492757
    reference: chr 6
allele count: 2
allele frequency: 1.682963361887612e-5
allele num: 118838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.312_313delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+14_966+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+14_852+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+14_466+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+14_750+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+14_882+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3099_3100delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+14_924+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+14_498+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+14_1167+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+14_201+15delTG
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+14_917+15delTG
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16140
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: CCA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

6-134492762-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492762
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492762
    reference: chr 6
allele count: 2
allele frequency: 1.677908654652841e-5
allele num: 119196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.498+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.924+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.750+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.201+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.466+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.311T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.966+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.882+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.852+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3098T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1167+13T>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.917+13T>C
  variant of: http://identifiers.org/hgnc/10810
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

6-134492780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492780
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492780
    reference: chr 6
allele count: 6
allele frequency: 4.983719848494916e-5
allele num: 120392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.745G>A
  hgvsp: ENSP00000434302.1:p.Gly249Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.493G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.877G>A
  hgvsp: ENSP00000237305.7:p.Gly293Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.293G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3080G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.847G>A
  hgvsp: ENSP00000356831.5:p.Gly283Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.961G>A
  hgvsp: ENSP00000434450.1:p.Gly321Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.912G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.919G>A
  hgvsp: ENSP00000396242.3:p.Gly307Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1162G>A
  hgvsp: ENSP00000356832.5:p.Gly388Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.461G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.196G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18029
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly388Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

6-134492784-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492784
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492784
    reference: chr 6
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.957G>C
  hgvsp: ENST00000528577.1:c.957G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.741G>C
  hgvsp: ENST00000475719.2:c.741G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.192G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.915G>C
  hgvsp: ENST00000413996.3:c.915G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.489G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1158G>C
  hgvsp: ENST00000367858.5:c.1158G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.457G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.289G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.873G>C
  hgvsp: ENST00000237305.7:c.873G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3076G>C
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.843G>C
  hgvsp: ENST00000367857.5:c.843G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.908G>C
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu386Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

6-134492787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492787
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492787
    reference: chr 6
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.486G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.738G>A
  hgvsp: ENSP00000434302.1:p.Met246Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.454G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.840G>A
  hgvsp: ENSP00000356831.5:p.Met280Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.870G>A
  hgvsp: ENSP00000237305.7:p.Met290Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3073G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.912G>A
  hgvsp: ENSP00000396242.3:p.Met304Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.954G>A
  hgvsp: ENSP00000434450.1:p.Met318Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.189G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.905G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1155G>A
  hgvsp: ENSP00000356832.5:p.Met385Ile
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.286G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34455
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met385Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

6-134492796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492796
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492796
    reference: chr 6
allele count: 1
allele frequency: 8.278008642241022e-6
allele num: 120802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.277G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1146G>A
  hgvsp: ENST00000367858.5:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.831G>A
  hgvsp: ENST00000367857.5:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3064G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.903G>A
  hgvsp: ENST00000413996.3:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.477G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.945G>A
  hgvsp: ENST00000528577.1:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.729G>A
  hgvsp: ENST00000475719.2:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.445G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.180G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.861G>A
  hgvsp: ENST00000237305.7:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.783G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.896G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu382Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

6-134492810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492810
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492810
    reference: chr 6
allele count: 2
allele frequency: 1.655903295247558e-5
allele num: 120780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3050C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.166C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.882C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.817C>T
  hgvsp: ENST00000367857.5:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.431C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.889C>T
  hgvsp: ENST00000413996.3:c.889C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.263C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.931C>T
  hgvsp: ENST00000528577.1:c.931C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.463C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.715C>T
  hgvsp: ENST00000475719.2:c.715C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.847C>T
  hgvsp: ENST00000237305.7:c.847C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1132C>T
  hgvsp: ENST00000367858.5:c.1132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.769C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu378Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

6-134492825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492825
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492825
    reference: chr 6
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3035G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.448G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.916G>A
  hgvsp: ENSP00000434450.1:p.Val306Met
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.874G>A
  hgvsp: ENSP00000396242.3:p.Val292Met
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.802G>A
  hgvsp: ENSP00000356831.5:p.Val268Met
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1117G>A
  hgvsp: ENSP00000356832.5:p.Val373Met
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.416G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.700G>A
  hgvsp: ENSP00000434302.1:p.Val234Met
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.248G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.754G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.832G>A
  hgvsp: ENSP00000237305.7:p.Val278Met
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.151G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.867G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val373Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-134492838-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492838
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492838
    reference: chr 6
allele count: 2
allele frequency: 1.665750503889527e-5
allele num: 120066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.903T>G
  hgvsp: ENST00000528577.1:c.903T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.741T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1104T>G
  hgvsp: ENST00000367858.5:c.1104T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.435T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.687T>G
  hgvsp: ENST00000475719.2:c.687T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.789T>G
  hgvsp: ENST00000367857.5:c.789T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.861T>G
  hgvsp: ENST00000413996.3:c.861T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.403T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.138T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.235T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3022T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.854T>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.819T>G
  hgvsp: ENST00000237305.7:c.819T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro368Pro
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

6-134492840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492840
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492840
    reference: chr 6
allele count: 2
allele frequency: 1.667472611762352e-5
allele num: 119942
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1102C>T
  hgvsp: ENSP00000356832.5:p.Pro368Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.136C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.787C>T
  hgvsp: ENSP00000356831.5:p.Pro263Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.433C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.852C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.817C>T
  hgvsp: ENSP00000237305.7:p.Pro273Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.859C>T
  hgvsp: ENSP00000396242.3:p.Pro287Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3020C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.739C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.901C>T
  hgvsp: ENSP00000434450.1:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.401C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.233C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.685C>T
  hgvsp: ENSP00000434302.1:p.Pro229Ser
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro368Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-134492841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492841
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492841
    reference: chr 6
allele count: 1
allele frequency: 8.34125752798492e-6
allele num: 119886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.851G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.786G>A
  hgvsp: ENST00000367857.5:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3019G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.232G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.738G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.900G>A
  hgvsp: ENST00000528577.1:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.432G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.858G>A
  hgvsp: ENST00000413996.3:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.684G>A
  hgvsp: ENST00000475719.2:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1101G>A
  hgvsp: ENST00000367858.5:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.400G>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.816G>A
  hgvsp: ENST00000237305.7:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.135G>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln367Gln
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-134492849-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492849
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492849
    reference: chr 6
allele count: 2
allele frequency: 1.678612794386719e-5
allele num: 119146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.676C>A
  hgvsp: ENSP00000434302.1:p.His226Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.808C>A
  hgvsp: ENSP00000237305.7:p.His270Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.892C>A
  hgvsp: ENSP00000434450.1:p.His298Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.392C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.224C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3011C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.850C>A
  hgvsp: ENSP00000396242.3:p.His284Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.843C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1093C>A
  hgvsp: ENSP00000356832.5:p.His365Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.778C>A
  hgvsp: ENSP00000356831.5:p.His260Asn
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.730C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.127C>A
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.424C>A
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His365Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-134492855-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492855
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492855
    reference: chr 6
allele count: 1
allele frequency: 8.482915408367548e-6
allele num: 117884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.837G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.886G>T
  hgvsp: ENSP00000434450.1:p.Val296Leu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.386G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.844G>T
  hgvsp: ENSP00000396242.3:p.Val282Leu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.670G>T
  hgvsp: ENSP00000434302.1:p.Val224Leu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.724G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.418G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.802G>T
  hgvsp: ENSP00000237305.7:p.Val268Leu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.3005G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.772G>T
  hgvsp: ENSP00000356831.5:p.Val258Leu
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.218G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.121G>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1087G>T
  hgvsp: ENSP00000356832.5:p.Val363Leu
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val363Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-134492862-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492862
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492862
    reference: chr 6
allele count: 149
allele frequency: 1.286279113934978e-3
allele num: 115838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.795A>G
  hgvsp: ENST00000237305.7:c.795A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1080A>G
  hgvsp: ENST00000367858.5:c.1080A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.663A>G
  hgvsp: ENST00000475719.2:c.663A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.879A>G
  hgvsp: ENST00000528577.1:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.837A>G
  hgvsp: ENST00000413996.3:c.837A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.2998A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.717A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.379A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.765A>G
  hgvsp: ENST00000367857.5:c.765A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.411A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.211A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.830A>G
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.114A>G
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala360Ala
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

6-134492865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492865
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492865
    reference: chr 6
allele count: 15
allele frequency: 1.29919623059867e-4
allele num: 115456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.714C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.834C>T
  hgvsp: ENST00000413996.3:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.408C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1077C>T
  hgvsp: ENST00000367858.5:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.208C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.762C>T
  hgvsp: ENST00000367857.5:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.660C>T
  hgvsp: ENST00000475719.2:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.792C>T
  hgvsp: ENST00000237305.7:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.376C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.827C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.2995C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.876C>T
  hgvsp: ENST00000528577.1:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.111C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27334
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17375
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu359Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

6-134492873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134492873
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 134492873
    reference: chr 6
allele count: 2
allele frequency: 1.768972227136034e-5
allele num: 113060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000473704
  gene symbol: SGK1
  hgvsc: ENST00000473704.1:n.400C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356832
  ensembl transcript: ENST00000367858
  gene symbol: SGK1
  hgvsc: ENST00000367858.5:c.1072-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000367855
  gene symbol: SGK1
  hgvsc: ENST00000367855.3:n.822-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000396242
  ensembl transcript: ENST00000413996
  gene symbol: SGK1
  hgvsc: ENST00000413996.3:c.829-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000474427
  gene symbol: SGK1
  hgvsc: ENST00000474427.2:n.2987C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000531782
  gene symbol: SGK1
  hgvsc: ENST00000531782.1:n.106-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000477460
  gene symbol: SGK1
  hgvsc: ENST00000477460.2:n.371-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000356831
  ensembl transcript: ENST00000367857
  gene symbol: SGK1
  hgvsc: ENST00000367857.5:c.757-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000237305
  ensembl transcript: ENST00000237305
  gene symbol: SGK1
  hgvsc: ENST00000237305.7:c.787-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000525877
  gene symbol: SGK1
  hgvsc: ENST00000525877.1:n.203-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434450
  ensembl transcript: ENST00000528577
  gene symbol: SGK1
  hgvsc: ENST00000528577.1:c.871-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl protein: ENSP00000434302
  ensembl transcript: ENST00000475719
  gene symbol: SGK1
  hgvsc: ENST00000475719.2:c.655-3C>T
  variant of: http://identifiers.org/hgnc/10810
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118515
  ensembl transcript: ENST00000489458
  gene symbol: SGK1
  hgvsc: ENST00000489458.2:n.709-3C>T
  variant of: http://identifiers.org/hgnc/10810
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1072-3C>T
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23955
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 298
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.508183920473317e-5
allele num: 66594
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.053268765133172e-4
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

QD
type: SiteQuality
SIO_000300: 1.36e1

FS
type: SiteQuality
SIO_000300: 1.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 2.521979e6

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
all individuals: 3547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2699
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23937
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10217
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.489e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 2.520469e6

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23936
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 2.519296e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.658e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.289e1

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23936
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505180958101817e-5
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.658e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 2.519296e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
all individuals: 4089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23936
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.770340450086555e-4
allele num: 10398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 2.519296e6

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 2695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23932
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.571e1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
SIO_000300: 2.517913e6

GenotypeQuality
all individuals: 5511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23932
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.511116452349477e-5
allele num: 66568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 2.517913e6

MQ
type: SiteQuality
SIO_000300: 5.571e1

QD
type: SiteQuality
SIO_000300: 1.417e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23923
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504910352283989e-5
allele num: 66594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.373e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

DP
type: SiteQuality
SIO_000300: 2.517258e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.305e1

FS
type: SiteQuality
SIO_000300: 1.0078e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e0

GenotypeQuality
all individuals: 261
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.923076923076923e-3
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

FS
type: SiteQuality
SIO_000300: 1.768e0

QD
type: SiteQuality
SIO_000300: 1.426e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.012e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 2.516879e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23925
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504910352283989e-5
allele num: 66594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.03030303030303e-4
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.057e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.873e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.161e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 2.515274e6

GenotypeQuality
all individuals: 2699
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.561e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

DP
type: SiteQuality
SIO_000300: 2.514134e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.42e0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23913
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

DP
type: SiteQuality
SIO_000300: 2.514283e6

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

FS
type: SiteQuality
SIO_000300: 9.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

GenotypeQuality
all individuals: 351
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23920
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.652197422572021e-4
allele num: 66578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 2.514708e6

QD
type: SiteQuality
SIO_000300: 1.323e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
all individuals: 4531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24143
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.311e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 2.527852e6

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.064e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.018e1

GenotypeQuality
all individuals: 4584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24161
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.530891e6

QD
type: SiteQuality
SIO_000300: 1.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 2.764e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.135e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.367e0

GenotypeQuality
all individuals: 3589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11254
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24165
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5619
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

DP
type: SiteQuality
SIO_000300: 2.532222e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.672e0

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

GenotypeQuality
all individuals: 24264
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

FS
type: SiteQuality
SIO_000300: 1.965e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 2.541167e6

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24288
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.229e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 7.075e0

QD
type: SiteQuality
SIO_000300: 1.422e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 2.542639e6

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

GenotypeQuality
all individuals: 4362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3678
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24294
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.88e-1

FS
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.543295e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24301
bin: 9.75e1
variant carriers: 6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993946114424431e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

DP
type: SiteQuality
SIO_000300: 2.543705e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e-1

QD
type: SiteQuality
SIO_000300: 1.401e1

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3680
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24303
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

FS
type: SiteQuality
SIO_000300: 2.341e0

QD
type: SiteQuality
SIO_000300: 1.112e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

DP
type: SiteQuality
SIO_000300: 2.543767e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.54e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24303
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11348
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.543828e6

QD
type: SiteQuality
SIO_000300: 1.428e1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 5.914e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4705
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5678
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24295
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11319
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: -1.605e0

QD
type: SiteQuality
SIO_000300: 3.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.461e0

FS
type: SiteQuality
SIO_000300: 3.5506e2

MQ
type: SiteQuality
SIO_000300: 5.537e1

DP
type: SiteQuality
SIO_000300: 2.551416e6

VQSLOD
type: SiteQuality
SIO_000300: -1.183e2

GenotypeQuality
all individuals: 2141
bin: 9.25e1
variant carriers: 129

GenotypeQuality
all individuals: 8180
bin: 6.25e1
variant carriers: 146

GenotypeQuality
all individuals: 672
bin: 1.25e1
variant carriers: 171

GenotypeQuality
all individuals: 673
bin: 2.75e1
variant carriers: 163

GenotypeQuality
all individuals: 643
bin: 2.25e1
variant carriers: 140

GenotypeQuality
all individuals: 2726
bin: 7.75e1
variant carriers: 127

GenotypeQuality
all individuals: 723
bin: 3.75e1
variant carriers: 165

GenotypeQuality
all individuals: 622
bin: 5.75e1
variant carriers: 139

GenotypeQuality
all individuals: 664
bin: 5.25e1
variant carriers: 141

GenotypeQuality
all individuals: 668
bin: 4.25e1
variant carriers: 153

GenotypeQuality
all individuals: 17319
bin: 9.75e1
variant carriers: 3371

GenotypeQuality
all individuals: 12868
bin: 2.5e0
variant carriers: 117

GenotypeQuality
all individuals: 660
bin: 7.5e0
variant carriers: 143

GenotypeQuality
all individuals: 700
bin: 1.75e1
variant carriers: 176

GenotypeQuality
all individuals: 652
bin: 4.75e1
variant carriers: 156

GenotypeQuality
all individuals: 2541
bin: 8.25e1
variant carriers: 135

GenotypeQuality
all individuals: 2242
bin: 7.25e1
variant carriers: 130

GenotypeQuality
all individuals: 3596
bin: 6.75e1
variant carriers: 131

GenotypeQuality
all individuals: 657
bin: 3.25e1
variant carriers: 160

GenotypeQuality
all individuals: 1720
bin: 8.75e1
variant carriers: 128

European (Finnish)
type: Population
allele count: 590
allele frequency: 1.728178090216755e-1
allele num: 3414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2432
allele frequency: 4.611125857950021e-2
allele num: 52742
num of homozygotes: 0

South Asian
type: Population
allele count: 268
allele frequency: 1.775775245163e-2
allele num: 15092
num of homozygotes: 0

East Asian
type: Population
allele count: 728
allele frequency: 1.213737912637546e-1
allele num: 5998
num of homozygotes: 0

Latino
type: Population
allele count: 866
allele frequency: 1.250360958706324e-1
allele num: 6926
num of homozygotes: 0

African
type: Population
allele count: 590
allele frequency: 8.78499106611078e-2
allele num: 6716
num of homozygotes: 0

Other
type: Population
allele count: 40
allele frequency: 6.25e-2
allele num: 640
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.396e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.123e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.183e2

DP
type: SiteQuality
SIO_000300: 3.753977e6

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.849e0

FS
type: SiteQuality
SIO_000300: 1.61269e2

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3925
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2482
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34736
bin: 9.75e1
variant carriers: 106

GenotypeQuality
all individuals: 2736
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8500
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.269975786924939e-3
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 60
allele frequency: 8.991458114790948e-4
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 3.75e-3
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.491e0

QD
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 3.237059e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.805e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

FS
type: SiteQuality
SIO_000300: 2.13371e2

VQSLOD
type: SiteQuality
SIO_000300: -4.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3906
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2732
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 8520
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 887
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3011
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2139
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2482
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3083
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 32162
bin: 9.75e1
variant carriers: 199

South Asian
type: Population
allele count: 8
allele frequency: 4.866180048661801e-4
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.84931506849315e-3
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.756783134881905e-3
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 115
allele frequency: 1.743375174337517e-3
allele num: 65964
num of homozygotes: 0

Latino
type: Population
allele count: 62
allele frequency: 5.534725941796108e-3
allele num: 11202
num of homozygotes: 0

East Asian
type: Population
allele count: 31
allele frequency: 3.684335631091039e-3
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 6.699576868829337e-3
allele num: 5672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.038e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 2.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 8.3373e1

VQSLOD
type: SiteQuality
SIO_000300: -3.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 3.160763e6

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34088
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8537
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007088364269839e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.14778e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.393e0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 7.0563e1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34088
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003544182134919e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.273570324574962e-4
allele num: 6470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.0563e1

VQSLOD
type: SiteQuality
SIO_000300: -2.416e1

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.393e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

QD
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 3.14778e6

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34289
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.167289e6

VQSLOD
type: SiteQuality
SIO_000300: -2.091e2

FS
type: SiteQuality
SIO_000300: 2.12687e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

GenotypeQuality
all individuals: 8530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.355e0

FS
type: SiteQuality
SIO_000300: 2.18686e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 3.197459e6

MQRankSum
type: SiteQuality
SIO_000300: -6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.192e2

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeQuality
all individuals: 3956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8535
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34447
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926782273603083e-4
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.21955e2

VQSLOD
type: SiteQuality
SIO_000300: -2.269e2

DP
type: SiteQuality
SIO_000300: 3.193629e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.599e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 3056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34432
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3128
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.191309e6

FS
type: SiteQuality
SIO_000300: 2.21955e2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.953e0

QD
type: SiteQuality
SIO_000300: 6.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.305e2

MQ
type: SiteQuality
SIO_000300: 5.59e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.005e0

GenotypeQuality
all individuals: 34287
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.381e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 1.9971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -3.261e0

QD
type: SiteQuality
SIO_000300: 6.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.159033e6

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34285
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

FS
type: SiteQuality
SIO_000300: 1.963e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.495e-1

DP
type: SiteQuality
SIO_000300: 3.158982e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3978
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34294
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.037e0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 3.15932e6

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
all individuals: 2209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8526
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 1.239e1

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

FS
type: SiteQuality
SIO_000300: 4.675e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 3.158101e6

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.433e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 3.157993e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.011e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 1.628e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

GenotypeQuality
all individuals: 3096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34314
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.157942e6

QD
type: SiteQuality
SIO_000300: 1.357e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

FS
type: SiteQuality
SIO_000300: 1.775e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.015e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -4.005e-1

DP
type: SiteQuality
SIO_000300: 3.157404e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

QD
type: SiteQuality
SIO_000300: 1.505e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.015e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 1.505e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.005e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e0

DP
type: SiteQuality
SIO_000300: 3.157404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

GenotypeDepth
all individuals: 1845
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1070
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34350
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8357
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
SIO_000300: 2.141e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 3.155674e6

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34346
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.211e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.584e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.4e-1

DP
type: SiteQuality
SIO_000300: 3.15029e6

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34347
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 8.38e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.068e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.14818e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.596e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.106e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 3.121237e6

GenotypeDepth
all individuals: 90
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5858
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4699
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5292
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.089256498818396e-5
allele num: 11002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

DP
type: SiteQuality
SIO_000300: 1.309959e6

QD
type: SiteQuality
SIO_000300: 3.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.787e1

VQSLOD
type: SiteQuality
SIO_000300: -3.065e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

GenotypeDepth
all individuals: 468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2263
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5306
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.084302325581395e-5
allele num: 11008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

MQRankSum
type: SiteQuality
SIO_000300: -1.514e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

QD
type: SiteQuality
SIO_000300: 1.679e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.314932e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.796e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeDepth
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4481
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 978
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185677021579322e-4
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.783e1

DP
type: SiteQuality
SIO_000300: 1.329842e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.844e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeDepth
all individuals: 73
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4778
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4071
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.347808e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.06e0

VQSLOD
type: SiteQuality
SIO_000300: -2.386e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

GenotypeDepth
all individuals: 73
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3994
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4648
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.04649900488511e-5
allele num: 11054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

FS
type: SiteQuality
SIO_000300: 5.794e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.352517e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeDepth
all individuals: 56
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32519
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5485149741398e-5
allele num: 64578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.733e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.976e0

DP
type: SiteQuality
SIO_000300: 1.369533e6

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 253
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3375
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1836
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 9.75e1
variant carriers: 85

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 8.296236341562121e-3
allele num: 9884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.004141905276428e-5
allele num: 11106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.091094556582486e-5
allele num: 64702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 1.393492e6

VQSLOD
type: SiteQuality
SIO_000300: 6.31e0

QD
type: SiteQuality
SIO_000300: 1.567e1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.022e1

GenotypeDepth
all individuals: 85
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.304375236414071e-5
allele num: 15862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.121e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 1.0447e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.289e0

DP
type: SiteQuality
SIO_000300: 1.412658e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.404e0

GenotypeDepth
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44979
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.243935812912054e-4
allele num: 16078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 1.484409e6

FS
type: SiteQuality
SIO_000300: 1.506e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.126e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

GenotypeDepth
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.045530683721638e-5
allele num: 65670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

QD
type: SiteQuality
SIO_000300: 1.315e1

VQSLOD
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.495471e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeDepth
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 878
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 707
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.545803024357852e-5
allele num: 66262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.531324e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

GenotypeDepth
all individuals: 348
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.553e0

FS
type: SiteQuality
SIO_000300: 6.377e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.074e0

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.53443e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

GenotypeDepth
all individuals: 18276
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49349
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506387081224391e-5
allele num: 66384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -3.412e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 3.646e0

DP
type: SiteQuality
SIO_000300: 1.537019e6

QD
type: SiteQuality
SIO_000300: 7.1e0

GenotypeDepth
all individuals: 611
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 85
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 9.67e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.574e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.5e-1

DP
type: SiteQuality
SIO_000300: 1.541592e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeDepth
all individuals: 348
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34245
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1024
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218472036066772e-4
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 4.699e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.652e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 1.54313e6

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeDepth
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5071
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49324
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507340749449821e-5
allele num: 66342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.582e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 1.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.141e0

DP
type: SiteQuality
SIO_000300: 1.541416e6

GenotypeDepth
all individuals: 124
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 868
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3783
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18863
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02535245356084e-5
allele num: 66108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

FS
type: SiteQuality
SIO_000300: 2.937e0

QD
type: SiteQuality
SIO_000300: 9.69e0

DP
type: SiteQuality
SIO_000300: 1.533878e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3757
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18863
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4919
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1300
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321801718133271e-4
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.716e0

DP
type: SiteQuality
SIO_000300: 1.531695e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

GenotypeDepth
all individuals: 3782
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 185
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.243000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.877e0

QD
type: SiteQuality
SIO_000300: 7.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.530904e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.215e0

GenotypeDepth
all individuals: 55
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 470
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65658
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.916699722332408e-5
allele num: 10084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.170554115759595e-5
allele num: 16206
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.362e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 1.517279e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.514e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 2.324e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 744
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2708
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 614
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537468097536976e-5
allele num: 65042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

DP
type: SiteQuality
SIO_000300: 1.494163e6

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 1.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.918e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeDepth
all individuals: 17490
bin: 2.75e1
variant carriers: 21

GenotypeDepth
all individuals: 73
bin: 7.25e1
variant carriers: 3

GenotypeDepth
all individuals: 125
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 27568
bin: 2.25e1
variant carriers: 16

GenotypeDepth
all individuals: 32
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 889
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 9.75e1
variant carriers: 148

GenotypeQuality
all individuals: 1042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5967
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

African
type: Population
allele count: 140
allele frequency: 1.43530859134714e-2
allele num: 9754
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.688818730267888e-5
allele num: 63982
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.492493592090809e-4
allele num: 10924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.450438e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

QD
type: SiteQuality
SIO_000300: 1.31e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3516
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 82
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 53
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.725165459050845e-4
allele num: 63762
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.756846167983827e-4
allele num: 10882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.442418e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.114e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.256e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

FS
type: SiteQuality
SIO_000300: 6.16e0