5-176491569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491569
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.560T>C
  hgvsp: ENSP00000423515.1:p.Ile187Thr
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*313T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.758T>C
  hgvsp: ENSP00000421212.1:p.Ile253Thr
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.929T>C
  hgvsp: ENSP00000261948.4:p.Ile310Thr
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*115T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.854T>C
  hgvsp: ENSP00000350869.3:p.Ile285Thr
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.326T>C
  hgvsp: ENSP00000421089.1:p.Ile109Thr
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.929T>C
  hgvsp: ENSP00000424495.1:p.Ile310Thr
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.902T>C
  hgvsp: ENSP00000425725.1:p.Ile301Thr
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile285Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

5-176491580-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491580
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491580
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.571T>G
  hgvsp: ENSP00000423515.1:p.Ser191Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.913T>G
  hgvsp: ENSP00000425725.1:p.Ser305Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.769T>G
  hgvsp: ENSP00000421212.1:p.Ser257Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.940T>G
  hgvsp: ENSP00000424495.1:p.Ser314Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*324T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.940T>G
  hgvsp: ENSP00000261948.4:p.Ser314Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.337T>G
  hgvsp: ENSP00000421089.1:p.Ser113Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.865T>G
  hgvsp: ENSP00000350869.3:p.Ser289Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*126T>G
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser289Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

5-176491583-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491583
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491583
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.772A>G
  hgvsp: ENSP00000421212.1:p.Thr258Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.943A>G
  hgvsp: ENSP00000261948.4:p.Thr315Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.574A>G
  hgvsp: ENSP00000423515.1:p.Thr192Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.943A>G
  hgvsp: ENSP00000424495.1:p.Thr315Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*327A>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.916A>G
  hgvsp: ENSP00000425725.1:p.Thr306Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.340A>G
  hgvsp: ENSP00000421089.1:p.Thr114Ala
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*129A>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.868A>G
  hgvsp: ENSP00000350869.3:p.Thr290Ala
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22377
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr290Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

5-176491584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491584
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491584
    reference: chr 5
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.917C>T
  hgvsp: ENSP00000425725.1:p.Thr306Ile
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.773C>T
  hgvsp: ENSP00000421212.1:p.Thr258Ile
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.944C>T
  hgvsp: ENSP00000424495.1:p.Thr315Ile
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.575C>T
  hgvsp: ENSP00000423515.1:p.Thr192Ile
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.341C>T
  hgvsp: ENSP00000421089.1:p.Thr114Ile
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*328C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.944C>T
  hgvsp: ENSP00000261948.4:p.Thr315Ile
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.869C>T
  hgvsp: ENSP00000350869.3:p.Thr290Ile
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11918
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr290Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

5-176491589-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491589
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491589
    reference: chr 5
allele count: 7
allele frequency: 5.767582888405511e-5
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.346T>G
  hgvsp: ENSP00000421089.1:p.Leu116Val
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.949T>G
  hgvsp: ENSP00000261948.4:p.Leu317Val
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.922T>G
  hgvsp: ENSP00000425725.1:p.Leu308Val
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*333T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.874T>G
  hgvsp: ENSP00000350869.3:p.Leu292Val
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.949T>G
  hgvsp: ENSP00000424495.1:p.Leu317Val
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.580T>G
  hgvsp: ENSP00000423515.1:p.Leu194Val
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*135T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.778T>G
  hgvsp: ENSP00000421212.1:p.Leu260Val
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu292Val
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

5-176491602-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491602
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491602
    reference: chr 5
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*148G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*2G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*346G>C
  variant of: http://identifiers.org/hgnc/16403
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
hgvs: c.*2G>C
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

5-176491619-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491619
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491619
    reference: chr 5
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*363T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*19T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*165T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*19T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*19T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+17T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+17T>C
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12323
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-176491622-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491622
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491622
    reference: chr 5
allele count: 2
allele frequency: 1.674789395233549e-5
allele num: 119418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*366C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+20C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+20C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*22C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*168C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*22C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*22C>A
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11879
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-176491627-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491627
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491627
    reference: chr 5
allele count: 50
allele frequency: 4.279502892943956e-4
allele num: 116836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*27T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*27T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+25T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*27T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*173T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*371T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*27T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*27T>G
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+25T>G
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15542
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

5-176491628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491628
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491628
    reference: chr 5
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*372G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*28G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+26G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*28G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*174G>A
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+26G>A
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

5-176491630-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491630
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491630
    reference: chr 5
allele count: 418
allele frequency: 3.730344298284755e-3
allele num: 112054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*374G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*176G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+28G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+28G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*30G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*30G>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*30G>C
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 12246
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 2.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.25e1
  variant carriers: 16
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/5-176491637-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491637
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491637
    reference: chr 5
allele count: 2
allele frequency: 1.651773178507128e-5
allele num: 121082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*183A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*381A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*37A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*37A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*37A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+35A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*37A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+35A>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*37A>C
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15169
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-176491638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491638
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491638
    reference: chr 5
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*184T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+36T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*382T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*38T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*38T>C
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+36T>C
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3651
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

5-176491651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176491651
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176491651
    reference: chr 5
allele count: 49
allele frequency: 4.064973204360306e-4
allele num: 120542
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000350869
  ensembl transcript: ENST00000358149
  gene symbol: ZNF346
  hgvsc: ENST00000358149.3:c.*51C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421388
  ensembl transcript: ENST00000508155
  gene symbol: ZNF346
  hgvsc: ENST00000508155.1:c.*395C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423515
  ensembl transcript: ENST00000506693
  gene symbol: ZNF346
  hgvsc: ENST00000506693.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000261948
  ensembl transcript: ENST00000261948
  gene symbol: ZNF346
  hgvsc: ENST00000261948.4:c.*51C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000424495
  ensembl transcript: ENST00000503039
  gene symbol: ZNF346
  hgvsc: ENST00000503039.1:c.*2+49C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421089
  ensembl transcript: ENST00000512315
  gene symbol: ZNF346
  hgvsc: ENST00000512315.1:c.*2+49C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000425725
  ensembl transcript: ENST00000511834
  gene symbol: ZNF346
  hgvsc: ENST00000511834.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000423690
  ensembl transcript: ENST00000513587
  gene symbol: ZNF346
  hgvsc: ENST00000513587.1:c.*197C>T
  variant of: http://identifiers.org/hgnc/16403
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000113761
  ensembl protein: ENSP00000421212
  ensembl transcript: ENST00000503425
  gene symbol: ZNF346
  hgvsc: ENST00000503425.1:c.*51C>T
  variant of: http://identifiers.org/hgnc/16403
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9958
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10761
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8774
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

5-176516554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516554
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516554
    reference: chr 5
allele count: 2
allele frequency: 1.961822925862711e-5
allele num: 101946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-45-5G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.107G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-50G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15797
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
hgvs: c.-45-5G>A
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-176516556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516556
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516556
    reference: chr 5
allele count: 9
allele frequency: 8.877840909090909e-5
allele num: 101376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.109C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-45-3C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-48C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9073
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6897
  bin: 3.75e1
  variant carriers: 0
hgvs: c.-45-3C>T
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-176516563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516563
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516563
    reference: chr 5
allele count: 6
allele frequency: 5.857201429157149e-5
allele num: 102438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.116T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-41T>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

5-176516568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516568
    reference: chr 5
allele count: 2
allele frequency: 1.930762844399822e-5
allele num: 103586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.121A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-36A>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16602
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5972
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

5-176516568-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516568
    reference: chr 5
allele count: 1
allele frequency: 9.653814221999111e-6
allele num: 103586
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.121A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-36A>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-176516573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516573
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516573
    reference: chr 5
allele count: 1
allele frequency: 9.571576247176385e-6
allele num: 104476
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.126A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-31A>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

5-176516576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516576
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516576
    reference: chr 5
allele count: 1
allele frequency: 9.508053321163024e-6
allele num: 105174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.129T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-28T>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-176516577-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516577
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516577
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 105448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.130T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-27T>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

5-176516577-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516577
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516576
    reference: chr 5
allele count: 1
allele frequency: 9.483347242242622e-6
allele num: 105448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.133delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-24delG
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: TG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

5-176516579-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516579
    reference: chr 5
allele count: 1
allele frequency: 9.437345463468036e-6
allele num: 105962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.132G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-25G>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24527
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-176516580-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516580
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516580
    reference: chr 5
allele count: 1
allele frequency: 9.411941871846999e-6
allele num: 106248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.133G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-24G>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25750
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

5-176516582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516582
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516582
    reference: chr 5
allele count: 3
allele frequency: 2.81214848143982e-5
allele num: 106680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-22C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.135C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26380
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-176516584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516584
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516584
    reference: chr 5
allele count: 1
allele frequency: 9.316712318557028e-6
allele num: 107334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.137C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

5-176516588-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516588
    reference: chr 5
allele count: 2
allele frequency: 1.833651166202142e-5
allele num: 109072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.141G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-16G>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

5-176516593-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516593
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516593
    reference: chr 5
allele count: 1
allele frequency: 9.015669233127175e-6
allele num: 110918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-11G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.146G>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31284
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

5-176516594-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516594
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516594
    reference: chr 5
allele count: 1
allele frequency: 8.99005699696136e-6
allele num: 111234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-10T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.147T>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

5-176516595-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516595
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516595
    reference: chr 5
allele count: 1
allele frequency: 8.955277344939373e-6
allele num: 111666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.148G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-9G>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

5-176516600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516600
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516600
    reference: chr 5
allele count: 4
allele frequency: 3.543460543566847e-5
allele num: 112884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.2G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.153G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

5-176516608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516608
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516608
    reference: chr 5
allele count: 2
allele frequency: 1.764975819831268e-5
allele num: 113316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.5G>A
  hgvsp: ENSP00000377259.2:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.10G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.5G>A
  hgvsp: ENSP00000377254.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.5G>A
  hgvsp: ENSP00000395164.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.5G>A
  hgvsp: ENSP00000424905.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.5G>A
  hgvsp: ENSP00000426492.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.5G>A
  hgvsp: ENSP00000422889.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.5G>A
  hgvsp: ENSP00000424960.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.5G>A
  hgvsp: ENSP00000292408.4:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.5G>A
  hgvsp: ENSP00000292410.3:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.5G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.161G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.5G>A
  hgvsp: ENSP00000427222.1:p.Arg2Gln
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg2Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-176516616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516616
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516616
    reference: chr 5
allele count: 1
allele frequency: 8.688097306689835e-6
allele num: 115100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.13C>T
  hgvsp: ENST00000503708.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.13C>T
  hgvsp: ENST00000514472.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.13C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.13C>T
  hgvsp: ENST00000502906.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.13C>T
  hgvsp: ENST00000510911.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.13C>T
  hgvsp: ENST00000430285.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.13C>T
  hgvsp: ENST00000292410.3:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.13C>T
  hgvsp: ENST00000292408.4:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.13C>T
  hgvsp: ENST00000393648.2:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.13C>T
  hgvsp: ENST00000393637.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.18C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.13C>T
  hgvsp: ENST00000513166.1:c.13C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.169C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu5Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-176516622-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516622
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516622
    reference: chr 5
allele count: 3
allele frequency: 2.588304315566062e-5
allele num: 115906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.19C>A
  hgvsp: ENSP00000426492.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.19C>A
  hgvsp: ENSP00000427222.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.19C>A
  hgvsp: ENSP00000395164.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.175C>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.19C>A
  hgvsp: ENSP00000292410.3:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.19C>A
  hgvsp: ENSP00000292408.4:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.19C>A
  hgvsp: ENSP00000422889.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.19C>A
  hgvsp: ENSP00000377259.2:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.24C>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.19C>A
  hgvsp: ENSP00000424905.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.19C>A
  hgvsp: ENSP00000424960.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.19C>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.19C>A
  hgvsp: ENSP00000377254.1:p.Leu7Met
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12671
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu7Met
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

5-176516624-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516624
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516624
    reference: chr 5
allele count: 1
allele frequency: 8.610594475442584e-6
allele num: 116136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.21G>A
  hgvsp: ENST00000430285.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.21G>A
  hgvsp: ENST00000393637.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.21G>A
  hgvsp: ENST00000292408.4:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.21G>A
  hgvsp: ENST00000510911.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.26G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.21G>A
  hgvsp: ENST00000514472.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.21G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.21G>A
  hgvsp: ENST00000502906.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.21G>A
  hgvsp: ENST00000513166.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.21G>A
  hgvsp: ENST00000503708.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.21G>A
  hgvsp: ENST00000292410.3:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.177G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.21G>A
  hgvsp: ENST00000393648.2:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu7Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

5-176516631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516631
    reference: chr 5
allele count: 28300
allele frequency: 2.408182715545117e-1
allele num: 117516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.28G>A
  hgvsp: ENSP00000426492.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.33G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.28G>A
  hgvsp: ENSP00000292408.4:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.28G>A
  hgvsp: ENSP00000292410.3:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.28G>A
  hgvsp: ENSP00000422889.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.28G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.28G>A
  hgvsp: ENSP00000424960.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.28G>A
  hgvsp: ENSP00000395164.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.28G>A
  hgvsp: ENSP00000377259.2:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.28G>A
  hgvsp: ENSP00000424905.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.28G>A
  hgvsp: ENSP00000377254.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.28G>A
  hgvsp: ENSP00000427222.1:p.Val10Ile
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.184G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 1.25e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 3.75e1
  variant carriers: 3775
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 1623
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 904
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.25e1
  variant carriers: 3185
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 7.5e0
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11329
  bin: 2.75e1
  variant carriers: 2825
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 1038
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 820
genotype quality: GenotypeQuality
hgvs: p.Val10Ile
num of homozygotes: 3935
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

5-176516640-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516640
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516640
    reference: chr 5
allele count: 2
allele frequency: 1.698600353308873e-5
allele num: 117744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.37A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.37A>G
  hgvsp: ENSP00000377259.2:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.37A>G
  hgvsp: ENSP00000377254.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.42A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.37A>G
  hgvsp: ENSP00000424905.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.37A>G
  hgvsp: ENSP00000292408.4:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.193A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.37A>G
  hgvsp: ENSP00000426492.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.37A>G
  hgvsp: ENSP00000424960.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.37A>G
  hgvsp: ENSP00000292410.3:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.37A>G
  hgvsp: ENSP00000422889.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.37A>G
  hgvsp: ENSP00000395164.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.37A>G
  hgvsp: ENSP00000427222.1:p.Ser13Gly
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser13Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176516643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516643
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516643
    reference: chr 5
allele count: 1
allele frequency: 8.487811502682149e-6
allele num: 117816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.40G>A
  hgvsp: ENSP00000422889.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.40G>A
  hgvsp: ENSP00000424960.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.40G>A
  hgvsp: ENSP00000377254.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.40G>A
  hgvsp: ENSP00000395164.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.40G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.40G>A
  hgvsp: ENSP00000292408.4:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.40G>A
  hgvsp: ENSP00000426492.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.40G>A
  hgvsp: ENSP00000292410.3:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.40G>A
  hgvsp: ENSP00000377259.2:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.40G>A
  hgvsp: ENSP00000424905.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.196G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.45G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.40G>A
  hgvsp: ENSP00000427222.1:p.Val14Met
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val14Met
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

5-176516646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516646
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516646
    reference: chr 5
allele count: 2
allele frequency: 1.698283035850755e-5
allele num: 117766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.43C>T
  hgvsp: ENSP00000426492.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.43C>T
  hgvsp: ENSP00000377259.2:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.43C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.43C>T
  hgvsp: ENSP00000377254.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.43C>T
  hgvsp: ENSP00000424960.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.43C>T
  hgvsp: ENSP00000292410.3:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.43C>T
  hgvsp: ENSP00000427222.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.48C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.43C>T
  hgvsp: ENSP00000424905.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.43C>T
  hgvsp: ENSP00000395164.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.43C>T
  hgvsp: ENSP00000422889.1:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.43C>T
  hgvsp: ENSP00000292408.4:p.Pro15Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.199C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro15Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-176516647-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516647
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516647
    reference: chr 5
allele count: 2
allele frequency: 1.697677577074562e-5
allele num: 117808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.44C>G
  hgvsp: ENSP00000292410.3:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.44C>G
  hgvsp: ENSP00000424960.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.44C>G
  hgvsp: ENSP00000426492.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.44C>G
  hgvsp: ENSP00000422889.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.44C>G
  hgvsp: ENSP00000427222.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.44C>G
  hgvsp: ENSP00000292408.4:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.44C>G
  hgvsp: ENSP00000424905.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.44C>G
  hgvsp: ENSP00000395164.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.49C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.44C>G
  hgvsp: ENSP00000377254.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.44C>G
  hgvsp: ENSP00000377259.2:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.44C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.200C>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro15Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

5-176516653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516653
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516653
    reference: chr 5
allele count: 2
allele frequency: 1.698254194687861e-5
allele num: 117768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.50C>T
  hgvsp: ENSP00000424960.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.50C>T
  hgvsp: ENSP00000292408.4:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.50C>T
  hgvsp: ENSP00000427222.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.50C>T
  hgvsp: ENSP00000422889.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.50C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.50C>T
  hgvsp: ENSP00000426492.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.55C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.50C>T
  hgvsp: ENSP00000424905.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.50C>T
  hgvsp: ENSP00000377254.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.50C>T
  hgvsp: ENSP00000292410.3:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.206C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.50C>T
  hgvsp: ENSP00000377259.2:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.50C>T
  hgvsp: ENSP00000395164.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro17Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

5-176516657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516657
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516657
    reference: chr 5
allele count: 1
allele frequency: 8.494877588813945e-6
allele num: 117718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.54A>G
  hgvsp: ENST00000393648.2:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.54A>G
  hgvsp: ENST00000503708.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.54A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.59A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.54A>G
  hgvsp: ENST00000292408.4:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.54A>G
  hgvsp: ENST00000510911.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.54A>G
  hgvsp: ENST00000430285.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.54A>G
  hgvsp: ENST00000292410.3:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.54A>G
  hgvsp: ENST00000393637.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.54A>G
  hgvsp: ENST00000514472.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.54A>G
  hgvsp: ENST00000513166.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.54A>G
  hgvsp: ENST00000502906.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.210A>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro18Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-176516674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516674
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516674
    reference: chr 5
allele count: 2
allele frequency: 1.711010351612627e-5
allele num: 116890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.71C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.71C>T
  hgvsp: ENSP00000427222.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.71C>T
  hgvsp: ENSP00000292410.3:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.71C>T
  hgvsp: ENSP00000292408.4:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.71C>T
  hgvsp: ENSP00000424905.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.71C>T
  hgvsp: ENSP00000395164.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.71C>T
  hgvsp: ENSP00000377259.2:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.71C>T
  hgvsp: ENSP00000424960.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.76C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.71C>T
  hgvsp: ENSP00000377254.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.71C>T
  hgvsp: ENSP00000422889.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.71C>T
  hgvsp: ENSP00000426492.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.227C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24242
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20964
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala24Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

5-176516675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516675
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516675
    reference: chr 5
allele count: 1
allele frequency: 8.560471168333105e-6
allele num: 116816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.72C>T
  hgvsp: ENST00000393637.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.228C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.77C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.72C>T
  hgvsp: ENST00000393648.2:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.72C>T
  hgvsp: ENST00000292410.3:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.72C>T
  hgvsp: ENST00000502906.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.72C>T
  hgvsp: ENST00000503708.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.72C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.72C>T
  hgvsp: ENST00000514472.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.72C>T
  hgvsp: ENST00000292408.4:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.72C>T
  hgvsp: ENST00000513166.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.72C>T
  hgvsp: ENST00000510911.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.72C>T
  hgvsp: ENST00000430285.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala24Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

5-176516698-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516698
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516698
    reference: chr 5
allele count: 1
allele frequency: 8.894581420998329e-6
allele num: 112428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+4T>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.91+4T>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-176516711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516711
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516711
    reference: chr 5
allele count: 1
allele frequency: 9.279881217520416e-6
allele num: 107760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+17G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176516717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516717
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516717
    reference: chr 5
allele count: 2
allele frequency: 1.906359615677902e-5
allele num: 104912
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+23G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-176516717-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516717
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516717
    reference: chr 5
allele count: 11
allele frequency: 1.048497788622846e-4
allele num: 104912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.91+23G>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

5-176516721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516721
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516721
    reference: chr 5
allele count: 2
allele frequency: 1.925224288629625e-5
allele num: 103884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+27G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20159
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-176516735-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516735
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516735
    reference: chr 5
allele count: 1
allele frequency: 1.043732387015969e-5
allele num: 95810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+41G>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

5-176516809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516809
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516809
    reference: chr 5
allele count: 1
allele frequency: 5.413012882970661e-5
allele num: 18474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+115C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-50C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33293
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

5-176516810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516810
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516810
    reference: chr 5
allele count: 2
allele frequency: 1.129305477131564e-4
allele num: 17710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+116G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-49G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

5-176516813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516813
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516813
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 17642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-46A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+119A>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-176516814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516814
    reference: chr 5
allele count: 1
allele frequency: 5.707762557077625e-5
allele num: 17520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-45G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+120G>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+120G>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

5-176516817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516817
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516817
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 16804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+123C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-42C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-176516828-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516828
    reference: chr 5
allele count: 149
allele frequency: 9.385235575711767e-3
allele num: 15876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-31C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+134C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+134C>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31718
  bin: 2.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 7.5e0
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 4
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-176516831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516831
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516831
    reference: chr 5
allele count: 1
allele frequency: 6.380806533945891e-5
allele num: 15672
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-28T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+137T>C
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-176516836-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516836
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516836
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 15420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.92-23C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+142C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+142C>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/5-176516860-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516860
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 14108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.93A>C
  hgvsp: ENST00000430285.1:c.93A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+166A>C
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+166A>C
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.93A>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

5-176516865-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516865
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516865
    reference: chr 5
allele count: 1
allele frequency: 7.199424046076313e-5
allele num: 13890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.98T>G
  hgvsp: ENSP00000395164.1:p.Ile33Ser
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+171T>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+171T>G
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile33Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

5-176516885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516885
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516885
    reference: chr 5
allele count: 6
allele frequency: 4.672897196261682e-4
allele num: 12840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.118C>T
  hgvsp: ENSP00000395164.1:p.Arg40Ter
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+191C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg40Ter
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-176516892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516892
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 12602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.125G>A
  hgvsp: ENSP00000395164.1:p.Arg42Lys
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+198G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg42Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

5-176516909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516909
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516909
    reference: chr 5
allele count: 1
allele frequency: 8.318083513558476e-5
allele num: 12022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.142C>T
  hgvsp: ENSP00000395164.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+215C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+215C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg48Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-176516930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516930
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516930
    reference: chr 5
allele count: 1
allele frequency: 8.533879501621438e-5
allele num: 11718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.163G>A
  hgvsp: ENSP00000395164.1:p.Ala55Thr
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+236G>A
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala55Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-176516949-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516949
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516949
    reference: chr 5
allele count: 1
allele frequency: 8.629616845012081e-5
allele num: 11588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.174+8C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+255C>G
  variant of: http://identifiers.org/hgnc/3691
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.174+8C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

5-176516953-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516953
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516953
    reference: chr 5
allele count: 10372
allele frequency: 8.69550637156271e-1
allele num: 11928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000426612
  gene symbol: FGFR4
  hgvsc: ENST00000426612.1:n.96+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424905
  ensembl transcript: ENST00000503708
  gene symbol: FGFR4
  hgvsc: ENST00000503708.1:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000507708
  gene symbol: FGFR4
  hgvsc: ENST00000507708.1:n.247+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000427222
  ensembl transcript: ENST00000510911
  gene symbol: FGFR4
  hgvsc: ENST00000510911.1:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000426492
  ensembl transcript: ENST00000514472
  gene symbol: FGFR4
  hgvsc: ENST00000514472.1:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000395164
  ensembl transcript: ENST00000430285
  gene symbol: FGFR4
  hgvsc: ENST00000430285.1:c.174+12A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377259
  ensembl transcript: ENST00000393648
  gene symbol: FGFR4
  hgvsc: ENST00000393648.2:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl transcript: ENST00000509511
  gene symbol: FGFR4
  hgvsc: ENST00000509511.1:n.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292408
  ensembl transcript: ENST00000292408
  gene symbol: FGFR4
  hgvsc: ENST00000292408.4:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000424960
  ensembl transcript: ENST00000502906
  gene symbol: FGFR4
  hgvsc: ENST00000502906.1:c.91+259A>G
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.5e0
  variant carriers: 1860
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 679
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 483
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 898
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.25e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 7.5e0
  variant carriers: 1805
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.25e1
  variant carriers: 750
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 846
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.75e1
  variant carriers: 478
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
num of homozygotes: 4534
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176516954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176516954
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176516954
    reference: chr 5
allele count: 4
allele frequency: 3.486750348675035e-4
allele num: 11472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000292410
  ensembl transcript: ENST00000292410
  gene symbol: FGFR4
  hgvsc: ENST00000292410.3:c.91+260C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000377254
  ensembl transcript: ENST00000393637
  gene symbol: FGFR4
  hgvsc: ENST00000393637.1:c.91+260C>T
  variant of: http://identifiers.org/hgnc/3691
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160867
  ensembl protein: ENSP00000422889
  ensembl transcript: ENST00000513166
  gene symbol: FGFR4
  hgvsc: ENST00000513166.1:c.91+260C>T
  variant of: http://identifiers.org/hgnc/3691
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11917
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.117107e6

QD
type: SiteQuality
SIO_000300: 5.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

GenotypeQuality
all individuals: 5003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.116832e6

VQSLOD
type: SiteQuality
SIO_000300: -4.178e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

QD
type: SiteQuality
SIO_000300: 1.434e1

GenotypeQuality
all individuals: 2613
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.116705e6

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 9.6e0

VQSLOD
type: SiteQuality
SIO_000300: -2.891e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.562e-1

QD
type: SiteQuality
SIO_000300: 8.9e0

DP
type: SiteQuality
SIO_000300: 2.1167e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4996
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11921
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 22341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049192122066009e-4
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

DP
type: SiteQuality
SIO_000300: 2.116623e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 1.144e0

QD
type: SiteQuality
SIO_000300: 1.298e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8799
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21963
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 2.111813e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.971e0

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeQuality
all individuals: 3793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11871
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.549426712116517e-4
allele num: 6454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -4.164e0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 7.108e0

DP
type: SiteQuality
SIO_000300: 2.067574e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.722e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

GenotypeQuality
all individuals: 7674
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040437823046519e-5
allele num: 65780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.425e0

MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.045784e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

QD
type: SiteQuality
SIO_000300: 3.85e0

GenotypeQuality
all individuals: 851
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16478
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 3

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 11614
bin: 9.75e1
variant carriers: 35

GenotypeQuality
all individuals: 657
bin: 1.75e1
variant carriers: 4

East Asian
type: Population
allele count: 2
allele frequency: 2.369106846718787e-4
allele num: 8442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 2.148997134670487e-3
allele num: 5584
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.163103237629811e-4
allele num: 9822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.723585813138052e-4
allele num: 64454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.655807365439094e-4
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.558e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.836e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 5.6039e1

QD
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 2.039766e6

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 488
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GenotypeQuality
all individuals: 3852
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 419
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variant carriers: 0

GenotypeQuality
all individuals: 1963
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variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508978421608571e-5
allele num: 66270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 1.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.059332e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.924e0

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

FS
type: SiteQuality
SIO_000300: 1.458e0

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2428
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 636
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 159
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variant carriers: 9

GenotypeQuality
all individuals: 4051
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1832
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 666
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variant carriers: 8

GenotypeQuality
all individuals: 854
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 16247
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4458
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3401
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 660
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 7023
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 11336
bin: 9.75e1
variant carriers: 251

African
type: Population
allele count: 88
allele frequency: 9.898762654668167e-3
allele num: 8890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 79
allele frequency: 1.488319517709118e-2
allele num: 5308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 202
allele frequency: 3.302056429201949e-3
allele num: 61174
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.251117068811439e-3
allele num: 11190
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.917545541706615e-3
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.005025125628141e-2
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.727005870841487e-4
allele num: 16352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.217e0

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.873e0

DP
type: SiteQuality
SIO_000300: 2.072457e6

FS
type: SiteQuality
SIO_000300: 7.8806e1

VQSLOD
type: SiteQuality
SIO_000300: -3.241e1

QD
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
all individuals: 2754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16916
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variant carriers: 0

GenotypeQuality
all individuals: 2030
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 858
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 3661
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GenotypeQuality
all individuals: 548
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GenotypeQuality
all individuals: 7456
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variant carriers: 0

GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 13632
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 603
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

FS
type: SiteQuality
SIO_000300: 1.5314e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.614e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.765e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

DP
type: SiteQuality
SIO_000300: 2.118518e6

GenotypeQuality
all individuals: 7372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
all individuals: 16029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 359
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 692
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GenotypeQuality
all individuals: 2028
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variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
all individuals: 1345
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GenotypeQuality
all individuals: 3931
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variant carriers: 0

GenotypeQuality
all individuals: 13631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2753
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -2.653e0

FS
type: SiteQuality
SIO_000300: 8.403e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.833e0

DP
type: SiteQuality
SIO_000300: 2.112656e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.574e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.326e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 8.4e0

GenotypeQuality
all individuals: 2014
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 7.25e1
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GenotypeQuality
all individuals: 13641
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 869
bin: 2.75e1
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GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 4702
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
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GenotypeQuality
all individuals: 1470
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
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variant carriers: 0

GenotypeQuality
all individuals: 6358
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GenotypeQuality
all individuals: 3385
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GenotypeQuality
all individuals: 69
bin: 1.25e1
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GenotypeQuality
all individuals: 2015
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 1777
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 32
allele frequency: 1.950743721043648e-3
allele num: 16404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.261556553990893e-4
allele num: 66326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 2.083178e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 1468
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
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GenotypeQuality
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GenotypeQuality
all individuals: 3498
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GenotypeQuality
all individuals: 4505
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GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 2440
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GenotypeQuality
all individuals: 3097
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 5503
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GenotypeQuality
all individuals: 7514
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variant carriers: 0

GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6988
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.216312056737589e-4
allele num: 9024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13842
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.72e-1

DP
type: SiteQuality
SIO_000300: 1.190963e6

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.913e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.594372801875733e-4
allele num: 13648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57142
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.486e0

VQSLOD
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 1.195321e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

GenotypeQuality
all individuals: 630
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 8.342602892102336e-4
allele num: 7192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57666
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 1.562e0

DP
type: SiteQuality
SIO_000300: 1.227145e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.429237680463633e-5
allele num: 58322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.878e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.921e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.287e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 1.254265e6

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6895
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 616
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variant carriers: 0

GenotypeQuality
all individuals: 964
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variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.5e0
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GenotypeQuality
all individuals: 2716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 315
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16680
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.124536905101169e-5
allele num: 14036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58322
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

VQSLOD
type: SiteQuality
SIO_000300: -1.921e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.287e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.254265e6

GenotypeQuality
all individuals: 20574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3991
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.047216349541931e-5
allele num: 14190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.282e0

VQSLOD
type: SiteQuality
SIO_000300: -1.901e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.295995e6

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3705
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23361
bin: 6.25e1
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GenotypeQuality
all individuals: 3110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.692448295704566e-5
allele num: 59086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14310
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.395e1

FS
type: SiteQuality
SIO_000300: 1.2035e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 1.326024e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1082
bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 678
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GenotypeQuality
all individuals: 3586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24301
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.536e0

MQ
type: SiteQuality
SIO_000300: 6.092e1

QD
type: SiteQuality
SIO_000300: 1.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.335926e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 3459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 1012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 469
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 5.25e1
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GenotypeQuality
all individuals: 678
bin: 8.25e1
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GenotypeQuality
all individuals: 3586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
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GenotypeQuality
all individuals: 1387
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.34698275862069e-4
allele num: 7424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59278
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 3.536e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 1.335926e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 6.092e1

GenotypeQuality
all individuals: 3478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678584617450566e-5
allele num: 59574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.352621e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.340482573726542e-4
allele num: 7460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.36008e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

VQSLOD
type: SiteQuality
SIO_000300: -2.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 7.15e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4356
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variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59982
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.074115044247788e-4
allele num: 14464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 5.19e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.178e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 1.380481e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7641
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5006
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068376068376068e-4
allele num: 9360
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 2.091e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.400922e6

FS
type: SiteQuality
SIO_000300: 4.995e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

GenotypeQuality
all individuals: 2314
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6914
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631640777966323e-5
allele num: 61288
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058425063505504e-4
allele num: 9448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

DP
type: SiteQuality
SIO_000300: 1.44027e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -4.91e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3146
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.68359844940516e-5
allele num: 14962
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 5.643e0

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

QD
type: SiteQuality
SIO_000300: 1.716e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

DP
type: SiteQuality
SIO_000300: 1.479517e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -1.442e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601229744443733e-5
allele num: 62452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.486658e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.639224538573895e-5
allele num: 15062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.551e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.493617e6

FS
type: SiteQuality
SIO_000300: 3.291e0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.738288530182898e-5
allele num: 63314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.03e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

FS
type: SiteQuality
SIO_000300: 3.544e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.115e0

DP
type: SiteQuality
SIO_000300: 1.517877e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1191
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variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.079002079002079e-4
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.139e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

InbreedingCoeff
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SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.555469e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.601e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 2.791e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 880
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GenotypeQuality
all individuals: 38631
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.335529650278763e-5
allele num: 15784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64198
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

QD
type: SiteQuality
SIO_000300: 1.103e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.556155e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeDepth
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33635
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1843
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.649000464900047e-5
allele num: 64530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.573531e6

FS
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ClippingRankSum
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
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GenotypeDepth
all individuals: 210
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GenotypeDepth
all individuals: 458
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182872013248167e-4
allele num: 8454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 3.459e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

QD
type: SiteQuality
SIO_000300: 2.242e1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 1.578752e6

GenotypeDepth
all individuals: 6061
bin: 3.25e1
variant carriers: 3779

GenotypeDepth
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variant carriers: 1739

GenotypeDepth
all individuals: 2607
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variant carriers: 2376

GenotypeDepth
all individuals: 757
bin: 6.25e1
variant carriers: 656

GenotypeDepth
all individuals: 161
bin: 9.25e1
variant carriers: 105

GenotypeDepth
all individuals: 474
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variant carriers: 397

GenotypeQuality
all individuals: 132
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variant carriers: 24

GenotypeQuality
all individuals: 1890
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variant carriers: 42

GenotypeQuality
all individuals: 145
bin: 2.5e0
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GenotypeQuality
all individuals: 222
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variant carriers: 62

GenotypeQuality
all individuals: 26193
bin: 6.25e1
variant carriers: 163

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 87

GenotypeQuality
all individuals: 98
bin: 1.25e1
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GenotypeQuality
all individuals: 724
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 278
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GenotypeQuality
all individuals: 482
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GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 36

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 402
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GenotypeQuality
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variant carriers: 22557

GenotypeQuality
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GenotypeQuality
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variant carriers: 169

GenotypeQuality
all individuals: 483
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variant carriers: 123

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 101

African
type: Population
allele count: 546
allele frequency: 5.49738219895288e-2
allele num: 9932
num of homozygotes: 11

Latino
type: Population
allele count: 3627
allele frequency: 3.237814675950723e-1
allele num: 11202
num of homozygotes: 578

Other
type: Population
allele count: 187
allele frequency: 2.2e-1
allele num: 850
num of homozygotes: 18

East Asian
type: Population
allele count: 4470
allele frequency: 5.234192037470726e-1
allele num: 8540
num of homozygotes: 1137

South Asian
type: Population
allele count: 3552
allele frequency: 2.192051345346828e-1
allele num: 16204
num of homozygotes: 377

European (Non-Finnish)
type: Population
allele count: 14548
allele frequency: 2.232109979133423e-1
allele num: 65176
num of homozygotes: 1646

European (Finnish)
type: Population
allele count: 1370
allele frequency: 2.44119743406985e-1
allele num: 5612
num of homozygotes: 168

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
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SIO_000300: 6.01e-2

DP
type: SiteQuality
SIO_000300: 1.955604e6

VQSLOD
type: SiteQuality
SIO_000300: 6.65e0

QD
type: SiteQuality
SIO_000300: 1.51e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.765e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 816
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 197
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variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 7.75e1
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.061568135198849e-5
allele num: 65326
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 8.82e-1

ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.061661870063071e-5
allele num: 65324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

QD
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BaseQRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -5.78e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.060350104051904e-5
allele num: 65352
num of homozygotes: 0

InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.060818462856968e-5
allele num: 65342
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QD
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FS
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.898380494749955e-5
allele num: 11238
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 2
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allele num: 11092
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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ClippingRankSum
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QD
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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DP
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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MQ
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FS
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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East Asian
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South Asian
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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QD
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VQSLOD
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MQ
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FS
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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DP
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

African
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allele frequency: 1.187366421277606e-4
allele num: 8422
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.04e-2

MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.301066874837367e-4
allele num: 7686
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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VQSLOD
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SIO_000300: -7.317e-1

FS
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.400952647800504e-4
allele num: 7138
num of homozygotes: 0

South Asian
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Latino
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East Asian
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allele frequency: 1.76678445229682e-3
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European (Finnish)
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African
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Other
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7084
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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QD
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SIO_000300: 5.14e0

MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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SIO_000300: 4.06e-1

BaseQRankSum
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SIO_000300: 2.48e-1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 7008
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Latino
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ReadPosRankSum
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SIO_000300: 5.5e-1

MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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QD
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MQRankSum
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MQ
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

Latino
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allele frequency: 7.092198581560284e-3
allele num: 282
num of homozygotes: 0

European (Non-Finnish)
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allele num: 5968
num of homozygotes: 0

African
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East Asian
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South Asian
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European (Finnish)
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Other
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ClippingRankSum
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MQ
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DP
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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allele num: 7654
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African
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East Asian
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Other
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Latino
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BaseQRankSum
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SIO_000300: -1.898e0

MQ
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VQSLOD
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QD
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Other
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Latino
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European (Finnish)
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South Asian
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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South Asian
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allele num: 7684
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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Latino
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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African
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European (Finnish)
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DP
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6805
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1198
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.048780487804878e-4
allele num: 3280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

DP
type: SiteQuality
SIO_000300: 1.78442e5

QD
type: SiteQuality
SIO_000300: 7.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.76e-2

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5419
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 420
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.109452736318408e-4
allele num: 3216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.82e-2

QD
type: SiteQuality
SIO_000300: 3.434e1

FS
type: SiteQuality
SIO_000300: 5.391e0

DP
type: SiteQuality
SIO_000300: 1.77721e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.135e0

GenotypeDepth
all individuals: 297
bin: 5.75e1
variant carriers: 297

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 4

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 125

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 46

GenotypeQuality
all individuals: 113
bin: 7.25e1
variant carriers: 104

GenotypeQuality
all individuals: 721
bin: 1.25e1
variant carriers: 697

GenotypeQuality
all individuals: 553
bin: 2.25e1
variant carriers: 497

GenotypeQuality
all individuals: 867
bin: 1.75e1
variant carriers: 854

GenotypeQuality
all individuals: 720
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 90

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 80

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 258

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 185

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 101

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 181

GenotypeQuality
all individuals: 1603
bin: 7.5e0
variant carriers: 1101

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 214

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 112

GenotypeQuality
all individuals: 134
bin: 6.75e1
variant carriers: 122

GenotypeQuality
all individuals: 4440
bin: 9.75e1
variant carriers: 4437

GenotypeQuality
all individuals: 172
bin: 7.75e1
variant carriers: 162

GenotypeQuality
all individuals: 193
bin: 6.25e1
variant carriers: 129

South Asian
type: Population
allele count: 6916
allele frequency: 9.148148148148149e-1
allele num: 7560
num of homozygotes: 3179

African
type: Population
allele count: 356
allele frequency: 7.672413793103449e-1
allele num: 464
num of homozygotes: 132

European (Finnish)
type: Population
allele count: 9
allele frequency: 6.428571428571429e-1
allele num: 14
num of homozygotes: 2

Latino
type: Population
allele count: 104
allele frequency: 8.387096774193549e-1
allele num: 124
num of homozygotes: 42

Other
type: Population
allele count: 114
allele frequency: 8.507462686567164e-1
allele num: 134
num of homozygotes: 49

European (Non-Finnish)
type: Population
allele count: 2667
allele frequency: 7.784588441330998e-1
allele num: 3426
num of homozygotes: 1027

East Asian
type: Population
allele count: 206
allele frequency: 1.0e0
allele num: 206
num of homozygotes: 103

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.142e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.381e1

QD
type: SiteQuality
SIO_000300: 2.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 2.5519e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0