3-41977445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977445
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977445
    reference: chr 3
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-13C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-13C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-13C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-13C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-13C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-13C>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8804
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-41977449-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977449
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977449
    reference: chr 3
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-17T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-17T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-17T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-17T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-17T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-17T>A
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8804
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29373
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

3-41977451-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977451
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977451
    reference: chr 3
allele count: 4
allele frequency: 3.31301351709515e-5
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-19T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-19T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-19T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-19T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-19T>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-19T>A
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 922
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-41977456-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977456
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977456
    reference: chr 3
allele count: 2
allele frequency: 1.656918463042434e-5
allele num: 120706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-24G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-24G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-24G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-24G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-24G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-24G>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-41977464-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977464
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977464
    reference: chr 3
allele count: 14997
allele frequency: 1.243841751679522e-1
allele num: 120570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-32T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-32T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-32T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-32T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-32T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-32T>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 5.25e1
  variant carriers: 912
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.75e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 2.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 6.25e1
  variant carriers: 1122
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 3.25e1
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 4.75e1
  variant carriers: 806
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.25e1
  variant carriers: 1074
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 2.75e1
  variant carriers: 338
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 1145
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.75e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 9.75e1
  variant carriers: 2306
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 5.75e1
  variant carriers: 989
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 4.25e1
  variant carriers: 749
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 8.25e1
  variant carriers: 879
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.25e1
  variant carriers: 563
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 8.75e1
  variant carriers: 712
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15566
  bin: 9.75e1
  variant carriers: 13799
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.25e1
  variant carriers: 6
num of homozygotes: 1102
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-41977469-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977469
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977469
    reference: chr 3
allele count: 1
allele frequency: 8.324869715788949e-6
allele num: 120122
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-37G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-37G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-37G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-37G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-37G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-37G>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-41977475-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41977475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41977475
    reference: chr 3
allele count: 1
allele frequency: 8.940385509423166e-6
allele num: 111852
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.239-43T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*30-43T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.239-43T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.278-43T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*96-43T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.163-43T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9896
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

3-41978772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978772
    reference: chr 3
allele count: 1
allele frequency: 7.55629439322956e-5
allele num: 13234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+818G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+818G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+818G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+818G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*29+15G>A
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

3-41978787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978787
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978787
    reference: chr 3
allele count: 1
allele frequency: 7.522190461862494e-5
allele num: 13294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+803G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+803G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+803G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+803G>A
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
hgvs: c.*29G>A
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-41978805-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978805
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978805
    reference: chr 3
allele count: 3
allele frequency: 2.24483687518707e-4
allele num: 13364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.*11G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+785G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.*11G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.*11G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+785G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+785G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+785G>T
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-41978819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978819
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978819
    reference: chr 3
allele count: 1
allele frequency: 7.500750075007501e-5
allele num: 13332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.252T>C
  hgvsp: ENST00000431379.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.252T>C
  hgvsp: ENST00000414606.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+771T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+771T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+771T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.252T>C
  hgvsp: ENST00000453224.1:c.252T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+771T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly84Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

3-41978829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978829
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978829
    reference: chr 3
allele count: 1
allele frequency: 7.521058965102287e-5
allele num: 13296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.242A>G
  hgvsp: ENSP00000401414.1:p.Gln81Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+761A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.242A>G
  hgvsp: ENSP00000391849.1:p.Gln81Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+761A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+761A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.242A>G
  hgvsp: ENSP00000399382.1:p.Gln81Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+761A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln81Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-41978836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978836
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978836
    reference: chr 3
allele count: 2
allele frequency: 1.515610791148833e-4
allele num: 13196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+754A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.239-4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+754A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.239-4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+754A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.239-4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+754A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 4632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
hgvs: c.239-4A>G
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-41978859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978859
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978859
    reference: chr 3
allele count: 1
allele frequency: 7.760360080707745e-5
allele num: 12886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+731T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.239-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.239-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+731T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.239-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+731T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+731T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 303
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 58
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genotype quality: GenotypeQuality
  all individuals: 438
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genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-41978877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978877
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978877
    reference: chr 3
allele count: 2
allele frequency: 1.626545217957059e-4
allele num: 12296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.239-45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+713A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.239-45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.239-45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+713A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+713A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+713A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 173
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genotype depth: GenotypeDepth
  all individuals: 612
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2050
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genotype depth: GenotypeDepth
  all individuals: 34
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genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 460
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genotype quality: GenotypeQuality
  all individuals: 588
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genotype quality: GenotypeQuality
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum

3-41978880-CTTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41978880
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41978876
    reference: chr 3
allele count: 1
allele frequency: 8.220979940808945e-5
allele num: 12164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+706_238+709delAGAA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+706_238+709delAGAA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+706_162+709delAGAA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.239-52_239-49delAGAA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.239-52_239-49delAGAA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.239-52_239-49delAGAA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+706_277+709delAGAA
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: CTTCT
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-41979539-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979538
    reference: chr 3
allele count: 1
allele frequency: 8.759328685049578e-6
allele num: 114164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+50delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+50delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+50delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+50delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.376delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+50delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+50delC
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+50delC
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TG
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

3-41979540-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979540
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979541
    reference: chr 3
allele count: 7
allele frequency: 6.451612903225807e-5
allele num: 108500
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+49dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.375dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+49dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+49dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+49dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+49dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+49dupA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+49dupA
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13051
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9630
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4606
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4305
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-41979540-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979540
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979539
    reference: chr 3
allele count: 71
allele frequency: 6.543778801843318e-4
allele num: 108500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+49delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+49delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+49delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.375delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+49delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+49delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+49delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+49delA
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11542
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13051
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9630
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: GT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

3-41979542-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979542
    reference: chr 3
allele count: 66
allele frequency: 5.821235160260368e-4
allele num: 113378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.374A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+48A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+48A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+48A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+48A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+48A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+48A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+48A>T
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11943
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-41979547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979547
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979547
    reference: chr 3
allele count: 1
allele frequency: 8.720372534314665e-6
allele num: 114674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.369A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+43A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-41979556-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979556
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979556
    reference: chr 3
allele count: 1519
allele frequency: 1.315470417070805e-2
allele num: 115472
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+34T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+34T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+34T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+34T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.360T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+34T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+34T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+34T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 1.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26306
  bin: 2.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 13389
  bin: 2.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 9
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

3-41979563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979563
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979563
    reference: chr 3
allele count: 3
allele frequency: 2.573649263078428e-5
allele num: 116566
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+27A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+27A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+27A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+27A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+27A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.353A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+27A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+27A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

3-41979574-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979574
    reference: chr 3
allele count: 9
allele frequency: 7.600452649179996e-5
allele num: 118414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+16T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+16T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.342T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+16T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+16T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+16T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+16T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+16T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15449
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32805
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45097
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 9.75e1
  variant carriers: 9
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-41979576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979576
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979576
    reference: chr 3
allele count: 2
allele frequency: 1.684238892444504e-5
allele num: 118748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+14T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+14T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+14T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+14T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+14T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+14T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.340T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+14T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

3-41979577-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979577
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979577
    reference: chr 3
allele count: 4
allele frequency: 3.365926723775224e-5
allele num: 118838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.339A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+13A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+13A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+13A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+13A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+13A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+13A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+13A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-41979585-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979585
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979585
    reference: chr 3
allele count: 2
allele frequency: 1.671290570578601e-5
allele num: 119668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+5G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+5G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+5G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.331G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+5G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+5G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+5G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+5G>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: c.238+5G>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

3-41979586-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979586
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979586
    reference: chr 3
allele count: 1
allele frequency: 8.351009637065121e-6
allele num: 119746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.238+4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.238+4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.277+4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.238+4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.330A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.238+4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.162+4A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.238+4A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33829
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.238+4A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-41979592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979592
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979592
    reference: chr 3
allele count: 3
allele frequency: 2.496297159213833e-5
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.236C>T
  hgvsp: ENSP00000401414.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.236C>T
  hgvsp: ENSP00000399382.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.236C>T
  hgvsp: ENSP00000301831.4:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.236C>T
  hgvsp: ENSP00000391849.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.236C>T
  hgvsp: ENSP00000412187.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.324C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.160C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.275C>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47319
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr79Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

3-41979601-TCCACCACTAGCCAGAGGTGGTTGCTTGTTTCATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979601
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979567
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 120424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsp: ENSP00000301831.4:p.Tyr65AsnfsTer8
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsp: ENSP00000401414.1:p.Tyr65AsnfsTer37
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsp: ENSP00000412187.1:p.Tyr65AsnfsTer8
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsp: ENSP00000399382.1:p.Tyr65AsnfsTer37
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsp: ENSP00000391849.1:p.Tyr65AsnfsTer?
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr65AsnfsTer8
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: TCCACCACTAGCCAGAGGTGGTTGCTTGTTTCATA
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-41979602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979602
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979602
    reference: chr 3
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.265G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.226G>A
  hgvsp: ENSP00000412187.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.226G>A
  hgvsp: ENSP00000401414.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.150G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.226G>A
  hgvsp: ENSP00000391849.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.226G>A
  hgvsp: ENSP00000399382.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.226G>A
  hgvsp: ENSP00000301831.4:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.314G>A
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu76Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

3-41979613-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979613
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979613
    reference: chr 3
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.215G>C
  hgvsp: ENSP00000391849.1:p.Trp72Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.215G>C
  hgvsp: ENSP00000301831.4:p.Trp72Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.215G>C
  hgvsp: ENSP00000399382.1:p.Trp72Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.215G>C
  hgvsp: ENSP00000401414.1:p.Trp72Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.303G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.254G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.139G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.215G>C
  hgvsp: ENSP00000412187.1:p.Trp72Ser
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp72Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

3-41979618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979618
    reference: chr 3
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.210C>T
  hgvsp: ENST00000431379.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.134C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.210C>T
  hgvsp: ENST00000301831.4:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.210C>T
  hgvsp: ENST00000453224.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.298C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.249C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.210C>T
  hgvsp: ENST00000420927.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.210C>T
  hgvsp: ENST00000414606.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His70His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-41979621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979621
    reference: chr 3
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.207C>T
  hgvsp: ENST00000414606.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.131C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.207C>T
  hgvsp: ENST00000420927.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.207C>T
  hgvsp: ENST00000301831.4:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.246C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.207C>T
  hgvsp: ENST00000453224.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.295C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.207C>T
  hgvsp: ENST00000431379.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn69Asn
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

3-41979625-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979625
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979625
    reference: chr 3
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.127G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.203G>A
  hgvsp: ENSP00000399382.1:p.Ser68Asn
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.203G>A
  hgvsp: ENSP00000301831.4:p.Ser68Asn
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.203G>A
  hgvsp: ENSP00000401414.1:p.Ser68Asn
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.242G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.203G>A
  hgvsp: ENSP00000391849.1:p.Ser68Asn
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.291G>A
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.203G>A
  hgvsp: ENSP00000412187.1:p.Ser68Asn
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser68Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

3-41979633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979633
    reference: chr 3
allele count: 4
allele frequency: 3.319061369444721e-5
allele num: 120516
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.195T>C
  hgvsp: ENST00000301831.4:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.195T>C
  hgvsp: ENST00000414606.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.283T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.195T>C
  hgvsp: ENST00000420927.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.195T>C
  hgvsp: ENST00000453224.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.195T>C
  hgvsp: ENST00000431379.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.234T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.119T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Tyr65Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-41979637-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979637
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979637
    reference: chr 3
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.191G>T
  hgvsp: ENSP00000301831.4:p.Trp64Leu
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.230G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.191G>T
  hgvsp: ENSP00000412187.1:p.Trp64Leu
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.191G>T
  hgvsp: ENSP00000401414.1:p.Trp64Leu
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.191G>T
  hgvsp: ENSP00000391849.1:p.Trp64Leu
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.279G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.115G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.191G>T
  hgvsp: ENSP00000399382.1:p.Trp64Leu
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp64Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

3-41979638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979638
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979638
    reference: chr 3
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.190T>C
  hgvsp: ENSP00000391849.1:p.Trp64Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.190T>C
  hgvsp: ENSP00000412187.1:p.Trp64Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.229T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.190T>C
  hgvsp: ENSP00000301831.4:p.Trp64Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.190T>C
  hgvsp: ENSP00000399382.1:p.Trp64Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.114T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.278T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.190T>C
  hgvsp: ENSP00000401414.1:p.Trp64Arg
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33747
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Trp64Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-41979643-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979643
    reference: chr 3
allele count: 2
allele frequency: 1.66008167601846e-5
allele num: 120476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.109A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.273A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.224A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.185A>G
  hgvsp: ENSP00000399382.1:p.His62Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.185A>G
  hgvsp: ENSP00000412187.1:p.His62Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.185A>G
  hgvsp: ENSP00000391849.1:p.His62Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.185A>G
  hgvsp: ENSP00000401414.1:p.His62Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.185A>G
  hgvsp: ENSP00000301831.4:p.His62Arg
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His62Arg
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-41979649-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979649
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979649
    reference: chr 3
allele count: 3
allele frequency: 2.493433957245919e-5
allele num: 120316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.267C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.179C>G
  hgvsp: ENSP00000301831.4:p.Thr60Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.179C>G
  hgvsp: ENSP00000399382.1:p.Thr60Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.179C>G
  hgvsp: ENSP00000401414.1:p.Thr60Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.218C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.179C>G
  hgvsp: ENSP00000391849.1:p.Thr60Ser
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.103C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.179C>G
  hgvsp: ENSP00000412187.1:p.Thr60Ser
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr60Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-41979663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979663
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979663
    reference: chr 3
allele count: 21
allele frequency: 1.755177774434582e-4
allele num: 119646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.165C>T
  hgvsp: ENST00000431379.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.165C>T
  hgvsp: ENST00000414606.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.165C>T
  hgvsp: ENST00000301831.4:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.165C>T
  hgvsp: ENST00000453224.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.165C>T
  hgvsp: ENST00000420927.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.89C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.204C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.253C>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16635
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 46212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His55His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-41979677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979677
    reference: chr 3
allele count: 2
allele frequency: 1.698888926641976e-5
allele num: 117724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.151C>T
  hgvsp: ENSP00000412187.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.75C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.151C>T
  hgvsp: ENSP00000301831.4:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.151C>T
  hgvsp: ENSP00000391849.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.239C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.151C>T
  hgvsp: ENSP00000401414.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.151C>T
  hgvsp: ENSP00000399382.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.190C>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16393
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg51Cys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-41979686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979686
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979686
    reference: chr 3
allele count: 1
allele frequency: 8.605555746790128e-6
allele num: 116204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.142C>T
  hgvsp: ENSP00000412187.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.142C>T
  hgvsp: ENSP00000391849.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.142C>T
  hgvsp: ENSP00000301831.4:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.66C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.142C>T
  hgvsp: ENSP00000401414.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.142C>T
  hgvsp: ENSP00000399382.1:p.Arg48Cys
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.230C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.181C>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg48Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

3-41979694-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979694
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979694
    reference: chr 3
allele count: 1
allele frequency: 8.749825003499931e-6
allele num: 114288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-5T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-5T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
hgvs: c.139-5T>C
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-41979697-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979697
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979695
    reference: chr 3
allele count: 1
allele frequency: 8.827527762574813e-6
allele num: 113282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-10_139-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-10_139-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-10_178-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-10_139-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-10_139-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-10_227-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-10_139-9delGT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-10_63-9delGT
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: AAC
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

3-41979700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979700
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979700
    reference: chr 3
allele count: 1
allele frequency: 8.853945318033716e-6
allele num: 112944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-11T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-11T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-41979701-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979701
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979701
    reference: chr 3
allele count: 1684
allele frequency: 1.500891265597148e-2
allele num: 112200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-12G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-12G>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14681
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 20111
  bin: 2.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 9437
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 9.75e1
  variant carriers: 1510
genotype quality: GenotypeQuality
  all individuals: 10440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 119
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-41979703-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979703
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979703
    reference: chr 3
allele count: 1
allele frequency: 8.947585046795869e-6
allele num: 111762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-14C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-14C>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

3-41979705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979705
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979705
    reference: chr 3
allele count: 1
allele frequency: 8.998794161582347e-6
allele num: 111126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-16C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-16C>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

3-41979713-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979713
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979713
    reference: chr 3
allele count: 1
allele frequency: 9.176163996402944e-6
allele num: 108978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-24A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-24A>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15713
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-41979716-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979716
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979716
    reference: chr 3
allele count: 1
allele frequency: 9.239070179977087e-6
allele num: 108236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-27T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-27T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

3-41979719-A-AATTCCTAAAATTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979719
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979734
    reference: chr 3
allele count: 3
allele frequency: 2.789400278940028e-5
allele num: 107550
alternate allele: AATTCCTAAAATTTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5294
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

3-41979721-G-GATCACTCTAAAATCACTCTAAAATCACTCTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979752
    reference: chr 3
allele count: 3
allele frequency: 2.80751665793217e-5
allele num: 106856
alternate allele: GATCACTCTAAAATCACTCTAAAATCACTCTA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5798
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

3-41979729-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979729
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979730
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 103162
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-41dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-41dupT
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

3-41979730-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979730
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979730
    reference: chr 3
allele count: 113
allele frequency: 1.092864465463549e-3
allele num: 103398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-41T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-41T>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17214
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13868
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

3-41979738-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41979738
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41979739
    reference: chr 3
allele count: 1
allele frequency: 1.017045685692201e-5
allele num: 98324
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.178-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.63-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.139-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.139-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.139-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.139-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.227-50dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.139-50dupT
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6612
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-41996067-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996067
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996067
    reference: chr 3
allele count: 2
allele frequency: 1.715471840529738e-5
allele num: 116586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+47T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7441T>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-41996069-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996069
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996069
    reference: chr 3
allele count: 1
allele frequency: 8.57529970672475e-6
allele num: 116614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7439A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+45A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+45A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-41996071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996071
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996071
    reference: chr 3
allele count: 1
allele frequency: 8.574123295892996e-6
allele num: 116630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7437A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+43A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+43A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-41996080-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996080
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996080
    reference: chr 3
allele count: 1
allele frequency: 8.566778034781118e-6
allele num: 116730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+34G>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7428G>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53844
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

3-41996084-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996084
    reference: chr 3
allele count: 1
allele frequency: 8.561937052638789e-6
allele num: 116796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7424G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+30G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+30G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+30G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+30G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+30G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+30G>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+30G>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-41996089-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996089
    reference: chr 3
allele count: 1
allele frequency: 8.535919147773831e-6
allele num: 117152
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+25A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7419A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+25A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+25A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+25A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+25A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+25A>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+25A>C
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-41996094-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996094
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996094
    reference: chr 3
allele count: 1
allele frequency: 8.516146613980106e-6
allele num: 117424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+20T>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7414T>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

3-41996106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996106
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996106
    reference: chr 3
allele count: 4
allele frequency: 3.387074922097277e-5
allele num: 118096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+8A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+8A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+8A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+8A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7402A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+8A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+8A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+8A>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29328
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
hgvs: c.138+8A>G
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-41996111-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996111
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996112
    reference: chr 3
allele count: 1
allele frequency: 8.437109783672505e-6
allele num: 118524
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.138+2dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7396dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.138+2dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.226+2dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.138+2dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.177+2dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.138+2dupT
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.138+2dupT
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: c.138+2dupT
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-41996131-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996131
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996131
    reference: chr 3
allele count: 2
allele frequency: 1.667834150572067e-5
allele num: 119916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7377C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.121C>G
  hgvsp: ENSP00000399382.1:p.Pro41Ala
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.121C>G
  hgvsp: ENSP00000412187.1:p.Pro41Ala
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.121C>G
  hgvsp: ENSP00000301831.4:p.Pro41Ala
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.121C>G
  hgvsp: ENSP00000401414.1:p.Pro41Ala
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.160C>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.121C>G
  hgvsp: ENSP00000391849.1:p.Pro41Ala
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.209C>G
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53857
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Pro41Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-41996136-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996136
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996136
    reference: chr 3
allele count: 94941
allele frequency: 7.869386469505827e-1
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.116A>G
  hgvsp: ENSP00000391849.1:p.Lys39Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7372A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.116A>G
  hgvsp: ENSP00000412187.1:p.Lys39Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.116A>G
  hgvsp: ENSP00000401414.1:p.Lys39Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.155A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.204A>G
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.116A>G
  hgvsp: ENSP00000301831.4:p.Lys39Arg
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.116A>G
  hgvsp: ENSP00000399382.1:p.Lys39Arg
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 8.75e1
  variant carriers: 896
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 1135
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.75e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.75e1
  variant carriers: 1052
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.25e1
  variant carriers: 650
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 760
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 9.25e1
  variant carriers: 1052
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.25e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 8.25e1
  variant carriers: 694
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 998
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 6.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 46973
  bin: 9.75e1
  variant carriers: 46367
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 6.75e1
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 3
hgvs: p.Lys39Arg
num of homozygotes: 38572
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

3-41996143-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996143
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996143
    reference: chr 3
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.109A>T
  hgvsp: ENSP00000301831.4:p.Lys37Ter
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.109A>T
  hgvsp: ENSP00000412187.1:p.Lys37Ter
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.109A>T
  hgvsp: ENSP00000391849.1:p.Lys37Ter
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7365A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.148A>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.109A>T
  hgvsp: ENSP00000399382.1:p.Lys37Ter
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.109A>T
  hgvsp: ENSP00000401414.1:p.Lys37Ter
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.197A>T
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys37Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

3-41996144-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996144
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996143
    reference: chr 3
allele count: 2
allele frequency: 1.657357840131263e-5
allele num: 120674
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.107delA
  hgvsp: ENSP00000301831.4:p.Asp36ValfsTer8
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.195delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.107delA
  hgvsp: ENSP00000399382.1:p.Asp36ValfsTer8
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.107delA
  hgvsp: ENSP00000391849.1:p.Asp36ValfsTer8
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.107delA
  hgvsp: ENSP00000412187.1:p.Asp36ValfsTer8
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7363delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.146delA
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.107delA
  hgvsp: ENSP00000401414.1:p.Asp36ValfsTer8
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp36ValfsTer8
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: AT
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

3-41996147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996147
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996147
    reference: chr 3
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.105T>C
  hgvsp: ENST00000420927.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7361T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.105T>C
  hgvsp: ENST00000453224.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.144T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.105T>C
  hgvsp: ENST00000431379.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.105T>C
  hgvsp: ENST00000414606.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.193T>C
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.105T>C
  hgvsp: ENST00000301831.4:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr35Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

3-41996159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41996159
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 41996159
    reference: chr 3
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000497684
  gene symbol: ULK4
  hgvsc: ENST00000497684.1:n.132C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000399382
  ensembl transcript: ENST00000414606
  gene symbol: ULK4
  hgvsc: ENST00000414606.1:c.93C>T
  hgvsp: ENST00000414606.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000401414
  ensembl transcript: ENST00000453224
  gene symbol: ULK4
  hgvsc: ENST00000453224.1:c.93C>T
  hgvsp: ENST00000453224.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000412187
  ensembl transcript: ENST00000420927
  gene symbol: ULK4
  hgvsc: ENST00000420927.1:c.93C>T
  hgvsp: ENST00000420927.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000459802
  gene symbol: ULK4
  hgvsc: ENST00000459802.1:n.62+7349C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000301831
  ensembl transcript: ENST00000301831
  gene symbol: ULK4
  hgvsc: ENST00000301831.4:c.93C>T
  hgvsp: ENST00000301831.4:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168038
  ensembl transcript: ENST00000460978
  gene symbol: ULK4
  hgvsc: ENST00000460978.1:n.181C>T
  variant of: http://identifiers.org/hgnc/15784
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000168038
  ensembl protein: ENSP00000391849
  ensembl transcript: ENST00000431379
  gene symbol: ULK4
  hgvsc: ENST00000431379.1:c.93C>T
  hgvsp: ENST00000431379.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15784
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala31Ala
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 29517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.998e0

MQ
type: SiteQuality
SIO_000300: 5.812e1

DP
type: SiteQuality
SIO_000300: 2.40507e6

VQSLOD
type: SiteQuality
SIO_000300: -2.304e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.25e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.38e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.792e0

FS
type: SiteQuality
SIO_000300: 1.612e0

DP
type: SiteQuality
SIO_000300: 2.404446e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.22e-1

GenotypeQuality
all individuals: 3165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8806
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.637143519591931e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 2.404427e6

MQ
type: SiteQuality
SIO_000300: 5.993e1

FS
type: SiteQuality
SIO_000300: 6.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.024e0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 81
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8801
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variant carriers: 2

GenotypeQuality
all individuals: 3151
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.041232904674423e-4
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.404142e6

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.034e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 9753
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 24

GenotypeQuality
all individuals: 3051
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variant carriers: 3

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 23759
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 10100
allele frequency: 1.515788209869132e-1
allele num: 66632
num of homozygotes: 769

South Asian
type: Population
allele count: 1886
allele frequency: 1.145808019441069e-1
allele num: 16460
num of homozygotes: 124

Other
type: Population
allele count: 131
allele frequency: 1.458797327394209e-1
allele num: 898
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 1320
allele frequency: 1.999394122993032e-1
allele num: 6602
num of homozygotes: 129

East Asian
type: Population
allele count: 4
allele frequency: 4.639294827186268e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 831
allele frequency: 7.187337830825116e-2
allele num: 11562
num of homozygotes: 44

African
type: Population
allele count: 725
allele frequency: 7.402491321217072e-2
allele num: 9794
num of homozygotes: 27

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 2.832586e6

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 959
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 4939
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1112
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.324e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 4.336e0

MQ
type: SiteQuality
SIO_000300: 6.011e1

VQSLOD
type: SiteQuality
SIO_000300: -1.104e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

DP
type: SiteQuality
SIO_000300: 2.727142e6

GenotypeQuality
all individuals: 4918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2987
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6659
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5269
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4878
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variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8878
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596678907871627e-5
allele num: 62630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 3.399097e6

VQSLOD
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

FS
type: SiteQuality
SIO_000300: 5.792e0

MQ
type: SiteQuality
SIO_000300: 6.005e1

QD
type: SiteQuality
SIO_000300: 1.747e1

MQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

GenotypeQuality
all individuals: 127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
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variant carriers: 0

GenotypeQuality
all individuals: 440
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 694
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 3218
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.382743362831858e-4
allele num: 7232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.51571e5

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.077e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1615
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.372495196266813e-4
allele num: 7286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.86e-1

DP
type: SiteQuality
SIO_000300: 1.60487e5

FS
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 4960
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.882352941176471e-3
allele num: 170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.030927835051546e-2
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3698
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

QD
type: SiteQuality
SIO_000300: 1.267e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.634e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.374e0

DP
type: SiteQuality
SIO_000300: 1.64918e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
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Latino
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.702702702702703e-4
allele num: 3700
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.761e0

ClippingRankSum
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SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.64461e5

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.225e0

QD
type: SiteQuality
SIO_000300: 6.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
all individuals: 122
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 706
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 27
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.10204081632653e-3
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1168
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

DP
type: SiteQuality
SIO_000300: 1.62661e5

QD
type: SiteQuality
SIO_000300: 9.33e0

FS
type: SiteQuality
SIO_000300: 1.2929e1

VQSLOD
type: SiteQuality
SIO_000300: -1.941e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.44069640914037e-4
allele num: 3676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.59798e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

FS
type: SiteQuality
SIO_000300: 2.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.22e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 2734
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 9.276437847866419e-4
allele num: 1078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: -3.729e-1

DP
type: SiteQuality
SIO_000300: 1.3822e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

QD
type: SiteQuality
SIO_000300: 1.671e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 740
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.780346820809249e-4
allele num: 3460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

FS
type: SiteQuality
SIO_000300: 2.045e0

DP
type: SiteQuality
SIO_000300: 1.23006e5

MQRankSum
type: SiteQuality
SIO_000300: -1.415e0

GenotypeQuality
all individuals: 605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.476232654266312e-4
allele num: 6774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.521e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.719e1

DP
type: SiteQuality
SIO_000300: 1.22589e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

QD
type: SiteQuality
SIO_000300: 1.085e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 2832
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3925
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variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 700
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GenotypeQuality
all individuals: 1168
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
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GenotypeQuality
all individuals: 5159
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.823144104803493e-5
allele num: 14656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.407591e6

MQ
type: SiteQuality
SIO_000300: 5.685e1

QD
type: SiteQuality
SIO_000300: 1.533e1

GenotypeQuality
all individuals: 3955
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3086
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2838
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.948928831995754e-5
allele num: 60308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.576789656259855e-4
allele num: 6342
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

DP
type: SiteQuality
SIO_000300: 1.411144e6

QD
type: SiteQuality
SIO_000300: 1.532e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3086
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 66
allele frequency: 8.217131474103585e-3
allele num: 8032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.974464415997877e-5
allele num: 60308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13400
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.185792349726776e-4
allele num: 9150
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

DP
type: SiteQuality
SIO_000300: 1.411144e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.532e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21149
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 790
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3090
bin: 9.75e1
variant carriers: 65

GenotypeQuality
all individuals: 1188
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62912
num of homozygotes: 0

East Asian
type: Population
allele count: 66
allele frequency: 7.951807228915662e-3
allele num: 8300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.410848e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.773e1

GenotypeQuality
all individuals: 4644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 4464
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GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 519
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GenotypeQuality
all individuals: 787
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GenotypeQuality
all individuals: 1738
bin: 5.25e1
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GenotypeQuality
all individuals: 2404
bin: 4.25e1
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GenotypeQuality
all individuals: 1340
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.779661016949152e-5
allele num: 14750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.429306e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 3.104e0

MQRankSum
type: SiteQuality
SIO_000300: -1.011e0

QD
type: SiteQuality
SIO_000300: 1.644e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2306
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1460
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 863
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4263
bin: 9.75e1
variant carriers: 1490

GenotypeQuality
all individuals: 2534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1226
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36048
bin: 6.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 189
allele frequency: 2.887259395050413e-2
allele num: 6546
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1110
allele frequency: 1.733454102508043e-2
allele num: 64034
num of homozygotes: 5

Latino
type: Population
allele count: 74
allele frequency: 6.614229531641044e-3
allele num: 11188
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 3.060363022372309e-3
allele num: 9476
num of homozygotes: 0

South Asian
type: Population
allele count: 103
allele frequency: 6.902559978555154e-3
allele num: 14922
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 1.501154734411085e-2
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 1.514692e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.651e1

GenotypeQuality
all individuals: 357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.097315436241611e-4
allele num: 9536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64676
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.877840909090909e-5
allele num: 11264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 1.718e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.912e0

DP
type: SiteQuality
SIO_000300: 1.539298e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
all individuals: 398
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.762581636573184e-4
allele num: 15618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

DP
type: SiteQuality
SIO_000300: 1.583543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5351
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.759635599159075e-5
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.589096e6

QD
type: SiteQuality
SIO_000300: 1.669e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

FS
type: SiteQuality
SIO_000300: 1.001e0

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.389e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 388
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.50140056022409e-4
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.508e1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.717e0

DP
type: SiteQuality
SIO_000300: 1.591035e6

GenotypeQuality
all individuals: 2844
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5411
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741250217656277e-4
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 1.604969e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5437
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.605819e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

FS
type: SiteQuality
SIO_000300: 2.114e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

QD
type: SiteQuality
SIO_000300: 8.73e0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.888e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 7.92e-1

DP
type: SiteQuality
SIO_000300: 1.612328e6

QD
type: SiteQuality
SIO_000300: 1.069e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.79e1

MQRankSum
type: SiteQuality
SIO_000300: -3.508e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.582e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 4.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

DP
type: SiteQuality
SIO_000300: 1.61569e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
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SIO_000300: -1.146e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.151e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.135e0

DP
type: SiteQuality
SIO_000300: 1.615974e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.617932e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 2.24e0

MQRankSum
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SIO_000300: -1.203e0

FS
type: SiteQuality
SIO_000300: 1.655e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: -5.463e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

South Asian
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allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.372e0

FS
type: SiteQuality
SIO_000300: 1.3428e1

DP
type: SiteQuality
SIO_000300: 1.617939e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.158e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 7.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 1.61811e6

FS
type: SiteQuality
SIO_000300: 1.979e0

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

South Asian
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 4
allele frequency: 2.431315341599805e-4
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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FS
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QD
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MQ
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BaseQRankSum
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SIO_000300: -2.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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FS
type: SiteQuality
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MQ
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QD
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02291325695581e-4
allele num: 9776
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003003003003003e-5
allele num: 66600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 1.617225e6

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
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SIO_000300: 3.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

FS
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.615287e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.486142583231654e-4
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.752577319587629e-3
allele num: 9700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.47e0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

DP
type: SiteQuality
SIO_000300: 1.605496e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.991e1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085753078038695e-5
allele num: 64814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

DP
type: SiteQuality
SIO_000300: 1.574499e6

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.050420168067227e-4
allele num: 9520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63784
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.547015e6

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.57e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.243e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 1.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62438
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.184834123222749e-3
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: -5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.50316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 1.197604790419162e-4
allele num: 8350
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.155832265152902e-5
allele num: 10922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61512
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

East Asian
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.433734939759036e-3
allele num: 830
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Latino
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allele count: 73
allele frequency: 6.728110599078341e-3
allele num: 10850
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1569
allele frequency: 1.671638610696782e-1
allele num: 9386
num of homozygotes: 118

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
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European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.737328699757393e-4
allele num: 61004
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.464567e6

FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.072e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10822
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.210653753026634e-4
allele num: 8260
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60818
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 1.426378e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.541077969649399e-5
allele num: 15288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60418
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10760
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 822
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.168e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.695087636030783e-5
allele num: 58994
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -2.4e-3

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.386e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.319292e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.710278775440397e-5
allele num: 58470
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.356e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.658e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

DP
type: SiteQuality
SIO_000300: 1.294007e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.243781094527363e-3
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.338150675766091e-4
allele num: 14946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10414
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.266349e6

MQRankSum
type: SiteQuality
SIO_000300: -3.692e0

MQ
type: SiteQuality
SIO_000300: 4.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.41e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.343724805159903e-4
allele num: 14884
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57554
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6352
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.024e-1

DP
type: SiteQuality
SIO_000300: 1.247853e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 4.875e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 110
allele frequency: 1.416795466254508e-2
allele num: 7764
num of homozygotes: 1

Latino
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allele count: 1
allele frequency: 1.001201441730076e-4
allele num: 9988
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55328
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South Asian
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allele num: 14544
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
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SIO_000300: -9.9e-2

BaseQRankSum
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MQRankSum
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SIO_000300: 2.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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Other
type: Population
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.921598770176787e-5
allele num: 52040
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ReadPosRankSum
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FS
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MQRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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SIO_000300: 6.113e1

BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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African
type: Population
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South Asian
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.498e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e0

DP
type: SiteQuality
SIO_000300: 5.647184e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.864e1

VQSLOD
type: SiteQuality
SIO_000300: -1.451e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

GenotypeQuality
all individuals: 151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
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GenotypeQuality
all individuals: 184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.376e0

QD
type: SiteQuality
SIO_000300: 1.098e1

MQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 5.647558e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

GenotypeQuality
all individuals: 647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65698
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.375719132615431e-5
allele num: 13558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.404e0

FS
type: SiteQuality
SIO_000300: 9.948e0

QD
type: SiteQuality
SIO_000300: 1.541e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 5.64801e6

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.341065922771986e-5
allele num: 13622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.167e0

DP
type: SiteQuality
SIO_000300: 5.651643e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

FS
type: SiteQuality
SIO_000300: 1.558e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 5.654126e6

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13946
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

DP
type: SiteQuality
SIO_000300: 5.65846e6

GenotypeQuality
all individuals: 406
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 6.75e1
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GenotypeQuality
all individuals: 156
bin: 8.75e1
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GenotypeQuality
all individuals: 53844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 2.615e0

VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

DP
type: SiteQuality
SIO_000300: 5.663538e6

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
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GenotypeQuality
all individuals: 365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53845
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029201502483945e-5
allele num: 66024
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.046663937781416e-4
allele num: 9772
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 1.868e0

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.326e1

DP
type: SiteQuality
SIO_000300: 5.67432e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.041e0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
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GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.680467e6

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
SIO_000300: 5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.583e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008966720828068e-5
allele num: 66468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

FS
type: SiteQuality
SIO_000300: 4.023e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 5.702541e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.376e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 96

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 56

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 310

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 21

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 47

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 27

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57950
bin: 9.75e1
variant carriers: 54652

GenotypeQuality
all individuals: 312
bin: 7.75e1
variant carriers: 239

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 164

GenotypeQuality
all individuals: 407
bin: 6.25e1
variant carriers: 133

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 302

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 131

African
type: Population
allele count: 3298
allele frequency: 3.365993059808124e-1
allele num: 9798
num of homozygotes: 557

European (Non-Finnish)
type: Population
allele count: 55072
allele frequency: 8.258652750284926e-1
allele num: 66684
num of homozygotes: 22778

Latino
type: Population
allele count: 10077
allele frequency: 8.705079474775398e-1
allele num: 11576
num of homozygotes: 4397

Other
type: Population
allele count: 693
allele frequency: 7.717149220489977e-1
allele num: 898
num of homozygotes: 274

South Asian
type: Population
allele count: 13607
allele frequency: 8.263694886432649e-1
allele num: 16466
num of homozygotes: 5649

European (Finnish)
type: Population
allele count: 5100
allele frequency: 7.713248638838476e-1
allele num: 6612
num of homozygotes: 1965

East Asian
type: Population
allele count: 7094
allele frequency: 8.237343241987923e-1
allele num: 8612
num of homozygotes: 2952

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 2.906e1

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 8.263802e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.199e-1

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.725e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.894e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 4.048372e6

VQSLOD
type: SiteQuality
SIO_000300: -2.337e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 2.251e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50144
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.041232904674423e-4
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.609e1

DP
type: SiteQuality
SIO_000300: 4.048392e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.006e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 8.050000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50143
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

VQSLOD
type: SiteQuality
SIO_000300: -5.564e-1

FS
type: SiteQuality
SIO_000300: 6.435e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.357e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 4.048709e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.111e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50141
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5014
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0