1-32127261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127261
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127261
    reference: chr 1
allele count: 4
allele frequency: 3.326182041943155e-5
allele num: 120258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.101G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3726G>A
  hgvsp: ENST00000271069.6:c.3726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.673G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.297G>A
  hgvsp: ENST00000440437.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3726G>A
  hgvsp: ENST00000373672.3:c.3726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1323G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.969G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.526G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 7.75e1
  variant carriers: 0
hgvs: c.3726G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-32127262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127262
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127262
    reference: chr 1
allele count: 3
allele frequency: 2.494719510369718e-5
allele num: 120254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3725C>T
  hgvsp: ENSP00000362776.3:p.Pro1242Leu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.968C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.296C>T
  hgvsp: ENSP00000390281.1:p.Pro99Leu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.100C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.672C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1322C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3725C>T
  hgvsp: ENSP00000271069.6:p.Pro1242Leu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.525C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro1242Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

1-32127265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127265
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127265
    reference: chr 1
allele count: 2
allele frequency: 1.663091020971578e-5
allele num: 120258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.97C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.522C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.669C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.293C>T
  hgvsp: ENSP00000390281.1:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3722C>T
  hgvsp: ENSP00000362776.3:p.Pro1241Leu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.965C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3722C>T
  hgvsp: ENSP00000271069.6:p.Pro1241Leu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1319C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro1241Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/1-32127268-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127268
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127268
    reference: chr 1
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.962G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.290G>T
  hgvsp: ENSP00000390281.1:p.Gly97Val
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.666G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.519G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.94G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1316G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3719G>T
  hgvsp: ENSP00000362776.3:p.Gly1240Val
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3719G>T
  hgvsp: ENSP00000271069.6:p.Gly1240Val
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly1240Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-32127268-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127268
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127268
    reference: chr 1
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3719G>C
  hgvsp: ENSP00000271069.6:p.Gly1240Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.519G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1316G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3719G>C
  hgvsp: ENSP00000362776.3:p.Gly1240Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.290G>C
  hgvsp: ENSP00000390281.1:p.Gly97Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.666G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.94G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.962G>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9076
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1240Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-32127269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127269
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127269
    reference: chr 1
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.665G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.518G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.93G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3718G>C
  hgvsp: ENSP00000362776.3:p.Gly1240Arg
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.961G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3718G>C
  hgvsp: ENSP00000271069.6:p.Gly1240Arg
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.289G>C
  hgvsp: ENSP00000390281.1:p.Gly97Arg
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1315G>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1240Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-32127270-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127270
    reference: chr 1
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3717G>T
  hgvsp: ENSP00000362776.3:p.Met1239Ile
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.92G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.664G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.288G>T
  hgvsp: ENSP00000390281.1:p.Met96Ile
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.960G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3717G>T
  hgvsp: ENSP00000271069.6:p.Met1239Ile
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1314G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.517G>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met1239Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

1-32127270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127270
    reference: chr 1
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3717G>A
  hgvsp: ENSP00000271069.6:p.Met1239Ile
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.288G>A
  hgvsp: ENSP00000390281.1:p.Met96Ile
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.92G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.664G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1314G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3717G>A
  hgvsp: ENSP00000362776.3:p.Met1239Ile
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.517G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.960G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25351
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1239Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-32127271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127271
    reference: chr 1
allele count: 9
allele frequency: 7.483909594372101e-5
allele num: 120258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3716T>C
  hgvsp: ENSP00000271069.6:p.Met1239Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.959T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.516T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1313T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3716T>C
  hgvsp: ENSP00000362776.3:p.Met1239Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.287T>C
  hgvsp: ENSP00000390281.1:p.Met96Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.663T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.91T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25365
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 9066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met1239Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32127279-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127279
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127278
    reference: chr 1
allele count: 1
allele frequency: 8.321405984755183e-6
allele num: 120172
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3707delC
  hgvsp: ENSP00000362776.3:p.Pro1236LeufsTer77
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.82delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.950delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.654delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.278delC
  hgvsp: ENSP00000390281.1:p.Pro93LeufsTer77
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3707delC
  hgvsp: ENSP00000271069.6:p.Pro1236LeufsTer77
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1304delC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.507delC
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1236LeufsTer77
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-32127282-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127282
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127282
    reference: chr 1
allele count: 1
allele frequency: 8.324315325064513e-6
allele num: 120130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.505C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.276C>A
  hgvsp: ENST00000440437.1:c.276C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.652C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.80C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3705C>A
  hgvsp: ENST00000271069.6:c.3705C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1302C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.948C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3705C>A
  hgvsp: ENST00000373672.3:c.3705C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro1235Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32127285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127285
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127285
    reference: chr 1
allele count: 24
allele frequency: 1.998434559594984e-4
allele num: 120094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1299C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3702C>T
  hgvsp: ENST00000271069.6:c.3702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3702C>T
  hgvsp: ENST00000373672.3:c.3702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.502C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.273C>T
  hgvsp: ENST00000440437.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.945C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.77C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.649C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1234Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-32127285-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127285
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127285
    reference: chr 1
allele count: 1
allele frequency: 8.326810664979099e-6
allele num: 120094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.273C>G
  hgvsp: ENST00000440437.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1299C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.649C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3702C>G
  hgvsp: ENST00000271069.6:c.3702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.945C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.502C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3702C>G
  hgvsp: ENST00000373672.3:c.3702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.77C>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1234Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-32127290-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127290
    reference: chr 1
allele count: 1
allele frequency: 8.330278897737497e-6
allele num: 120044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.268G>T
  hgvsp: ENSP00000390281.1:p.Ala90Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.940G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1294G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3697G>T
  hgvsp: ENSP00000271069.6:p.Ala1233Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3697G>T
  hgvsp: ENSP00000362776.3:p.Ala1233Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.644G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.497G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.72G>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala1233Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-32127298-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127298
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127298
    reference: chr 1
allele count: 1
allele frequency: 8.347106058329577e-6
allele num: 119802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.932C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.64C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1286C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.636C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3689C>A
  hgvsp: ENSP00000271069.6:p.Pro1230His
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.489C>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.260C>A
  hgvsp: ENSP00000390281.1:p.Pro87His
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3689C>A
  hgvsp: ENSP00000362776.3:p.Pro1230His
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1230His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-32127299-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127299
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127299
    reference: chr 1
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.635C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.63C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1285C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3688C>G
  hgvsp: ENSP00000362776.3:p.Pro1230Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.259C>G
  hgvsp: ENSP00000390281.1:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.931C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3688C>G
  hgvsp: ENSP00000271069.6:p.Pro1230Ala
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.488C>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1230Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

1-32127304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127304
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127304
    reference: chr 1
allele count: 1
allele frequency: 8.354498061756449e-6
allele num: 119696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3683G>A
  hgvsp: ENSP00000271069.6:p.Gly1228Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1280G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.254G>A
  hgvsp: ENSP00000390281.1:p.Gly85Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.926G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.483G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.58G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.630G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3683G>A
  hgvsp: ENSP00000362776.3:p.Gly1228Glu
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1228Glu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-32127306-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127306
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127306
    reference: chr 1
allele count: 1
allele frequency: 8.359107247345984e-6
allele num: 119630
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-1G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-1G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-1G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-1G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-1G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-1G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.56G>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-1G>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
hgvs: c.3682-1G>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-32127315-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127315
    reference: chr 1
allele count: 1
allele frequency: 8.381808123648433e-6
allele num: 119306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-10C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-10C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-10C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-10C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-10C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-10C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.47C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-10C>G
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-32127319-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127319
    reference: chr 1
allele count: 78
allele frequency: 6.54604048474269e-4
allele num: 119156
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-14G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.43G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-14G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-14G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-14G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-14G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-14G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-14G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

1-32127319-CGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127316
    reference: chr 1
allele count: 3
allele frequency: 2.517707878747189e-5
allele num: 119156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.40_42delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-17_1279-15delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-17_629-15delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-17_3682-15delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-17_253-15delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-17_482-15delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-17_3682-15delCTC
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-17_925-15delCTC
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: CGAG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

1-32127319-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127318
    reference: chr 1
allele count: 2
allele frequency: 1.678471919164792e-5
allele num: 119156
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9604
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6204
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.026451183342413e-5
  allele num: 66084
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 866
  num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
reference allele: CG
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-32127320-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127320
    reference: chr 1
allele count: 1
allele frequency: 8.401243384020834e-6
allele num: 119030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-15C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-15C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-15C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-15C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.42C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-15C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-15C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-15C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-32127325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127325
    reference: chr 1
allele count: 1
allele frequency: 8.404067568703253e-6
allele num: 118990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-20C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.37C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-20C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-20C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-20C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-20C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-20C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-20C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-32127329-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127329
    reference: chr 1
allele count: 1
allele frequency: 8.412693071305987e-6
allele num: 118868
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.33A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-24A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-24A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-24A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-24A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-24A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-24A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-24A>C
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-32127330-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127330
    reference: chr 1
allele count: 3
allele frequency: 2.524190155658393e-5
allele num: 118850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-25C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-25C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-25C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-25C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-25C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.32C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-25C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-25C>G
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-32127334-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127334
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127332
    reference: chr 1
allele count: 1
allele frequency: 8.424032078714155e-6
allele num: 118708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.26_27delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-31_3682-30delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-31_1279-30delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-31_482-30delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-31_253-30delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-31_3682-30delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-31_629-30delTT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-31_925-30delTT
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: CAA
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

1-32127355-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127355
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127355
    reference: chr 1
allele count: 3
allele frequency: 2.564365575956508e-5
allele num: 116988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-50T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-50T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-50T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-50T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-50T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-50T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-50T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5767
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-32127357-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127357
    reference: chr 1
allele count: 1
allele frequency: 8.60141063134354e-6
allele num: 116260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000466829
  gene symbol: COL16A1
  hgvsc: ENST00000466829.1:n.5G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.925-52G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3682-52G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.629-52G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.482-52G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.253-52G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1279-52G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3682-52G>T
  variant of: http://identifiers.org/hgnc/2193
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11833
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-32127884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127884
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127884
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 76402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+51G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+51G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+51G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+51G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+51G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+51G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+51G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17759
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

1-32127894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127894
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127894
    reference: chr 1
allele count: 5
allele frequency: 6.498570314530803e-5
allele num: 76940
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+41C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+41C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+41C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+41C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+41C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+41C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+41C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18230
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17702
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-32127897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127897
    reference: chr 1
allele count: 1
allele frequency: 1.289424143177657e-5
allele num: 77554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+38C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 302
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genotype quality: GenotypeQuality
  all individuals: 1907
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-32127900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127900
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127900
    reference: chr 1
allele count: 2
allele frequency: 2.560491614389963e-5
allele num: 78110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+35C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+35C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+35C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+35C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+35C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+35C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+35C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17736
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1469
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  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-32127901-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127901
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127901
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 78336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+34T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+34T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+34T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+34T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+34T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+34T>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+34T>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6403
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-32127902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127902
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127902
    reference: chr 1
allele count: 1
allele frequency: 1.275184901810763e-5
allele num: 78420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+33T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+33T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16914
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

1-32127903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127903
    reference: chr 1
allele count: 42
allele frequency: 5.343375486628839e-4
allele num: 78602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+32C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+32C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+32C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+32C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+32C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+32C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+32C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16882
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6436
  bin: 9.75e1
  variant carriers: 45
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-32127904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127904
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127904
    reference: chr 1
allele count: 7
allele frequency: 8.866595733900796e-5
allele num: 78948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+31C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+31C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17602
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16610
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7066
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-32127910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127910
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127910
    reference: chr 1
allele count: 1
allele frequency: 1.22013714341492e-5
allele num: 81958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+25G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+25G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+25G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+25G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+25G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+25G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+25G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4031
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16726
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-32127911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127911
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127911
    reference: chr 1
allele count: 43893
allele frequency: 4.578578432395218e-1
allele num: 95866
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+24G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+24G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+24G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+24G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+24G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+24G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+24G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 9.75e1
  variant carriers: 2855
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 10042
  bin: 2.25e1
  variant carriers: 6384
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.25e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 7.5e0
  variant carriers: 3179
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 3.25e1
  variant carriers: 1233
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 2.75e1
  variant carriers: 2925
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 573
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 1.75e1
  variant carriers: 9695
genotype depth: GenotypeDepth
  all individuals: 13363
  bin: 1.25e1
  variant carriers: 8432
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 1.75e1
  variant carriers: 409
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 1073
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 2.5e0
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 524
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 2.75e1
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 681
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 8.25e1
  variant carriers: 634
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 6.75e1
  variant carriers: 786
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 9.25e1
  variant carriers: 593
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.25e1
  variant carriers: 498
num of homozygotes: 9392
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-32127912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127912
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127912
    reference: chr 1
allele count: 3
allele frequency: 3.078564978244807e-5
allele num: 97448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+23C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+23C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+23C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+23C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+23C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+23C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+23C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5091
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-32127917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127917
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127917
    reference: chr 1
allele count: 2
allele frequency: 2.006823198876179e-5
allele num: 99660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+18G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+18G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

1-32127923-CCAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127923
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127920
    reference: chr 1
allele count: 2
allele frequency: 1.976948777257181e-5
allele num: 101166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+9_1278+11delATG
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+9_924+11delATG
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+9_628+11delATG
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+9_252+11delATG
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+9_3681+11delATG
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+9_481+11delATG
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+9_3681+11delATG
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17206
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7410
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: CCAT
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-32127924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127924
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127924
    reference: chr 1
allele count: 1
allele frequency: 9.867382380802021e-6
allele num: 101344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+11G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+11G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+11G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+11G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+11G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+11G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+11G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-32127928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127928
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127928
    reference: chr 1
allele count: 1
allele frequency: 9.797581956773068e-6
allele num: 102066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+7T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+7T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
hgvs: c.3681+7T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

1-32127929-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127929
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127929
    reference: chr 1
allele count: 2
allele frequency: 1.957100360106466e-5
allele num: 102192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681+6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628+6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681+6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924+6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252+6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481+6A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278+6A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19388
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 6.75e1
  variant carriers: 0
hgvs: c.3681+6A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-32127935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127935
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127935
    reference: chr 1
allele count: 5
allele frequency: 4.842239826454124e-5
allele num: 103258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3681G>A
  hgvsp: ENST00000271069.6:c.3681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1278G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.481G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.628G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.924G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3681G>A
  hgvsp: ENST00000373672.3:c.3681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.252G>A
  hgvsp: ENST00000440437.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21414
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
hgvs: c.3681G>A
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

1-32127944-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127944
    reference: chr 1
allele count: 1
allele frequency: 9.512394650229249e-6
allele num: 105126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3672T>C
  hgvsp: ENST00000271069.6:c.3672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.472T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1269T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.915T>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.243T>C
  hgvsp: ENST00000440437.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3672T>C
  hgvsp: ENST00000373672.3:c.3672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.619T>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1224Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-32127946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127946
    reference: chr 1
allele count: 1
allele frequency: 9.486585967442037e-6
allele num: 105412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1267C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.617C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.470C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.913C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3670C>T
  hgvsp: ENSP00000362776.3:p.Pro1224Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.241C>T
  hgvsp: ENSP00000390281.1:p.Pro81Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3670C>T
  hgvsp: ENSP00000271069.6:p.Pro1224Ser
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7434
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1224Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

1-32127952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127952
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127952
    reference: chr 1
allele count: 1
allele frequency: 9.376289239770469e-6
allele num: 106652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.464G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.611G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.907G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.235G>A
  hgvsp: ENSP00000390281.1:p.Gly79Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3664G>A
  hgvsp: ENSP00000271069.6:p.Gly1222Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1261G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3664G>A
  hgvsp: ENSP00000362776.3:p.Gly1222Ser
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7448
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly1222Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

1-32127953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127953
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127953
    reference: chr 1
allele count: 48835
allele frequency: 4.388400639815963e-1
allele num: 111282
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3663C>T
  hgvsp: ENST00000373672.3:c.3663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3663C>T
  hgvsp: ENST00000271069.6:c.3663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1260C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.610C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.234C>T
  hgvsp: ENST00000440437.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.906C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.463C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15554
  bin: 2.25e1
  variant carriers: 6177
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 7.5e0
  variant carriers: 668
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 349
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.25e1
  variant carriers: 793
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.75e1
  variant carriers: 4532
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 2.75e1
  variant carriers: 6268
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.25e1
  variant carriers: 2332
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 4.25e1
  variant carriers: 2197
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 576
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 3.75e1
  variant carriers: 3560
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 9.75e1
  variant carriers: 3355
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 3.25e1
  variant carriers: 5033
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 4.75e1
  variant carriers: 1394
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 492
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 297
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 3.75e1
  variant carriers: 361
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 613
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.5e0
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 9.25e1
  variant carriers: 711
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.75e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 782
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.75e1
  variant carriers: 781
hgvs: p.Asp1221Asp
num of homozygotes: 10482
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-32127953-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127953
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127953
    reference: chr 1
allele count: 1
allele frequency: 8.986179256303804e-6
allele num: 111282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3663C>G
  hgvsp: ENSP00000271069.6:p.Asp1221Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.610C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.234C>G
  hgvsp: ENSP00000390281.1:p.Asp78Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1260C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3663C>G
  hgvsp: ENSP00000362776.3:p.Asp1221Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.463C>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.906C>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp1221Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-32127960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127960
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127960
    reference: chr 1
allele count: 1
allele frequency: 9.291435155074053e-6
allele num: 107626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.603G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.456G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.899G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1253G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.227G>A
  hgvsp: ENSP00000390281.1:p.Gly76Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3656G>A
  hgvsp: ENSP00000362776.3:p.Gly1219Glu
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3656G>A
  hgvsp: ENSP00000271069.6:p.Gly1219Glu
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly1219Glu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/1-32127979-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127979
    reference: chr 1
allele count: 1
allele frequency: 9.729140722291407e-6
allele num: 102784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.437G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1234G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.880G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.584G>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3637G>T
  hgvsp: ENSP00000271069.6:p.Gly1213Cys
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.208G>T
  hgvsp: ENSP00000390281.1:p.Gly70Cys
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3637G>T
  hgvsp: ENSP00000362776.3:p.Gly1213Cys
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1213Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

1-32127979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127979
    reference: chr 1
allele count: 5
allele frequency: 4.864570361145703e-5
allele num: 102784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3637G>A
  hgvsp: ENSP00000271069.6:p.Gly1213Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3637G>A
  hgvsp: ENSP00000362776.3:p.Gly1213Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.880G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.584G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.208G>A
  hgvsp: ENSP00000390281.1:p.Gly70Ser
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1234G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.437G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21963
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Gly1213Ser
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-32127980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127980
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127980
    reference: chr 1
allele count: 6
allele frequency: 5.835213568816619e-5
allele num: 102824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3636C>T
  hgvsp: ENST00000271069.6:c.3636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.207C>T
  hgvsp: ENST00000440437.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.583C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1233C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.436C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.879C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3636C>T
  hgvsp: ENST00000373672.3:c.3636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1212Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-32127982-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127982
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127982
    reference: chr 1
allele count: 2
allele frequency: 1.956832279905289e-5
allele num: 102206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.205G>A
  hgvsp: ENSP00000390281.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3634G>A
  hgvsp: ENSP00000362776.3:p.Ala1212Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3634G>A
  hgvsp: ENSP00000271069.6:p.Ala1212Thr
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.581G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.434G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1231G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.877G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1212Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

1-32127983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32127983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32127983
    reference: chr 1
allele count: 3
allele frequency: 2.942907592701589e-5
allele num: 101940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.204C>T
  hgvsp: ENST00000440437.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.433C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3633C>T
  hgvsp: ENST00000373672.3:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3633C>T
  hgvsp: ENST00000271069.6:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.876C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1230C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.580C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1211Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-32128025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128025
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128025
    reference: chr 1
allele count: 10
allele frequency: 1.117768040776178e-4
allele num: 89464
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3628-37G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-37G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.871-37G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.428-37G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.575-37G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3628-37G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1225-37G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21638
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

1-32128026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128026
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128026
    reference: chr 1
allele count: 14
allele frequency: 1.594097285480051e-4
allele num: 87824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.428-38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3628-38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1225-38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3628-38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.871-38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.575-38C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-38C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21101
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

1-32128036-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128036
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128036
    reference: chr 1
allele count: 1
allele frequency: 1.221120500170957e-5
allele num: 81892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-48C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.575-48C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3628-48C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.871-48C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1225-48C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.428-48C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3628-48C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-32128039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128039
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128039
    reference: chr 1
allele count: 1
allele frequency: 1.217730150998539e-5
allele num: 82120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.871-51C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.428-51C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1225-51C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3628-51C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3628-51C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.575-51C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-51C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14688
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-32128138-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128138
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128136
    reference: chr 1
allele count: 9
allele frequency: 3.641660597232338e-4
allele num: 24714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+48_427+49delAT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+48_1224+49delAT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+48_3627+49delAT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+48_870+49delAT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-152_199-151delAT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+48_574+49delAT
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+48_3627+49delAT
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23776
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22231
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20692
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: CAT
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

1-32128140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128140
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128140
    reference: chr 1
allele count: 1502
allele frequency: 6.08688604311882e-2
allele num: 24676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+48A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+48A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-152A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+48A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+48A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+48A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+48A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 22195
  bin: 7.5e0
  variant carriers: 1756
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23404
  bin: 2.5e0
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 9.75e1
  variant carriers: 1566
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 2.75e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 5999
  bin: 1.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 10694
  bin: 2.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 19939
  bin: 7.5e0
  variant carriers: 91
num of homozygotes: 48
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-32128140-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128140
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128140
    reference: chr 1
allele count: 1
allele frequency: 4.052520667855406e-5
allele num: 24676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+48A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+48A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+48A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+48A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+48A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+48A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-152A>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10694
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5999
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19939
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

1-32128142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128142
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128142
    reference: chr 1
allele count: 11
allele frequency: 4.666157631288708e-4
allele num: 23574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+46G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+46G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-154G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+46G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+46G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+46G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+46G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24665
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21716
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21500
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10604
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-32128143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128143
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128143
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 23518
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+45C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+45C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+45C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+45C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+45C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-155C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+45C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21745
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11647
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21876
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

1-32128146-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128146
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128146
    reference: chr 1
allele count: 1
allele frequency: 4.229760595550292e-5
allele num: 23642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+42A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+42A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+42A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+42A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+42A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+42A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-158A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5616
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

1-32128152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128152
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128152
    reference: chr 1
allele count: 61
allele frequency: 2.642294031014468e-3
allele num: 23086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+36C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+36C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+36C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+36C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-164C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+36C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+36C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22036
  bin: 7.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 24771
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5146
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 22507
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13680
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

1-32128157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128157
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128157
    reference: chr 1
allele count: 1
allele frequency: 4.335009537020981e-5
allele num: 23068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+31G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+31G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+31G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+31G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+31G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+31G>A
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-169G>A
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24471
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22577
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15644
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-32128158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128158
    reference: chr 1
allele count: 4
allele frequency: 1.729056799515864e-4
allele num: 23134
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+30C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-170C>T
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+30C>T
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

1-32128159-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128159
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128159
    reference: chr 1
allele count: 6
allele frequency: 2.594706798131811e-4
allele num: 23124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000390281
  ensembl transcript: ENST00000440437
  gene symbol: COL16A1
  hgvsc: ENST00000440437.1:c.199-171A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488897
  gene symbol: COL16A1
  hgvsc: ENST00000488897.1:n.870+29A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+29A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000470799
  gene symbol: COL16A1
  hgvsc: ENST00000470799.1:n.574+29A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+29A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+29A>C
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000271069
  ensembl transcript: ENST00000271069
  gene symbol: COL16A1
  hgvsc: ENST00000271069.6:c.3627+29A>C
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22927
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-32128159-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32128159
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 32128159
    reference: chr 1
allele count: 2
allele frequency: 8.64902266043937e-5
allele num: 23124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000482910
  gene symbol: COL16A1
  hgvsc: ENST00000482910.1:n.427+29A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl transcript: ENST00000488128
  gene symbol: COL16A1
  hgvsc: ENST00000488128.2:n.1224+29A>G
  variant of: http://identifiers.org/hgnc/2193
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000084636
  ensembl protein: ENSP00000362776
  ensembl transcript: ENST00000373672
  gene symbol: COL16A1
  hgvsc: ENST00000373672.3:c.3627+29A>G
  variant of: http://identifiers.org/hgnc/2193
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.009073701288946e-5
allele num: 66566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.451e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 1.684e0

DP
type: SiteQuality
SIO_000300: 1.901307e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4725
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.279e1

FS
type: SiteQuality
SIO_000300: 2.1437e1

VQSLOD
type: SiteQuality
SIO_000300: -3.818e0

DP
type: SiteQuality
SIO_000300: 1.901352e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.027e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004446580939791e-5
allele num: 66568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

DP
type: SiteQuality
SIO_000300: 1.90137e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.107e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9076
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 1.901713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.327e1

VQSLOD
type: SiteQuality
SIO_000300: -4.213e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.213e-1

FS
type: SiteQuality
SIO_000300: 5.41e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

DP
type: SiteQuality
SIO_000300: 1.901713e6

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.663e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.739e0

MQ
type: SiteQuality
SIO_000300: 5.865e1

QD
type: SiteQuality
SIO_000300: 9.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

DP
type: SiteQuality
SIO_000300: 1.901976e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.660000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

DP
type: SiteQuality
SIO_000300: 1.902016e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027749229188078e-4
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.902016e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.598752598752599e-4
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.562988433885589e-4
allele num: 6398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.511116452349477e-5
allele num: 66568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.901885e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 1.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 6.018e1

DP
type: SiteQuality
SIO_000300: 1.901396e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 1.161e0

VQSLOD
type: SiteQuality
SIO_000300: -3.731e-1

DP
type: SiteQuality
SIO_000300: 1.900384e6

QD
type: SiteQuality
SIO_000300: 8.57e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.285e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 24

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 35650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.394277400581959e-3
allele num: 16496
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 1.826e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 1.900596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

QD
type: SiteQuality
SIO_000300: 1.097e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

QD
type: SiteQuality
SIO_000300: 1.097e1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 1.826e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.900596e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

GenotypeQuality
all individuals: 3199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.867e-1

QD
type: SiteQuality
SIO_000300: 6.99e0

DP
type: SiteQuality
SIO_000300: 1.898653e6

FS
type: SiteQuality
SIO_000300: 4.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 8961
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variant carriers: 0

GenotypeQuality
all individuals: 3185
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

DP
type: SiteQuality
SIO_000300: 1.894126e6

QD
type: SiteQuality
SIO_000300: 1.081e1

FS
type: SiteQuality
SIO_000300: 1.115e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 3184
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 4699
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GenotypeQuality
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GenotypeQuality
all individuals: 2030
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GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8939
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variant carriers: 0

GenotypeQuality
all individuals: 35228
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variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.219e1

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 1.892572e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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GenotypeQuality
all individuals: 991
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GenotypeQuality
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 2614
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.890477e6

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.238e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.592863969417012e-4
allele num: 6278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.888796e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 9.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.375e1

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

GenotypeQuality
all individuals: 2000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 34286
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511807214344027e-5
allele num: 66146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -3.612e-1

FS
type: SiteQuality
SIO_000300: 1.719e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 1.874626e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.54e-1

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeQuality
all individuals: 1990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1847
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GenotypeQuality
all individuals: 4754
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variant carriers: 76

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 548
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GenotypeQuality
all individuals: 108
bin: 5.75e1
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GenotypeQuality
all individuals: 980
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 7.288629737609329e-3
allele num: 9604
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026451183342413e-5
allele num: 66084
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223391240518718e-4
allele num: 16348
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.621919244887258e-4
allele num: 11442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.868482e6

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 752
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8653
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.485130111524163e-4
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.868482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.868482e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 32747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.488e1

FS
type: SiteQuality
SIO_000300: 8.923e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

DP
type: SiteQuality
SIO_000300: 1.856607e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.379e-1

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.91e1

VQSLOD
type: SiteQuality
SIO_000300: -2.161e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.338e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 6.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-1

DP
type: SiteQuality
SIO_000300: 1.849804e6

GenotypeQuality
all individuals: 2724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31827
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 1968
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variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 2452
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8249
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variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.762705923589205e-5
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

FS
type: SiteQuality
SIO_000300: 8.071999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.085e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.678e-1

DP
type: SiteQuality
SIO_000300: 1.834788e6

MQ
type: SiteQuality
SIO_000300: 5.898e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31388
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 966
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variant carriers: 0

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
all individuals: 781
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variant carriers: 0

GenotypeQuality
all individuals: 739
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variant carriers: 0

GenotypeQuality
all individuals: 1957
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variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.759635599159075e-5
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.088118605136772e-4
allele num: 9578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6253e1

VQSLOD
type: SiteQuality
SIO_000300: -1.171e0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.830095e6

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
all individuals: 2365
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variant carriers: 0

GenotypeQuality
all individuals: 1923
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variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3285
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 733
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GenotypeQuality
all individuals: 350
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.788e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.428e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 6.378e0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.308e1

DP
type: SiteQuality
SIO_000300: 1.805945e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.884150675195451e-5
allele num: 11256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.076260497738949e-5
allele num: 65014
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 7.153e0

QD
type: SiteQuality
SIO_000300: 1.335e1

DP
type: SiteQuality
SIO_000300: 1.642382e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5768
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.309944472488642e-5
allele num: 15848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.788e0

MQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.094e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.641167e6

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6400
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GenotypeQuality
all individuals: 416
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2215
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variant carriers: 0

GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 7750
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.1816e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.326e0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.289636238846946e-4
allele num: 11656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

DP
type: SiteQuality
SIO_000300: 1.202954e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.331763279391876e-5
allele num: 42886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11704
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.868e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

DP
type: SiteQuality
SIO_000300: 1.212926e6

QD
type: SiteQuality
SIO_000300: 6.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

GenotypeQuality
all individuals: 476
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1616
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.504847763225038e-5
allele num: 11758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.314600499953708e-5
allele num: 43204
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

FS
type: SiteQuality
SIO_000300: 2.497e0

QD
type: SiteQuality
SIO_000300: 8.35e0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.226495e6

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1534
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variant carriers: 0

GenotypeQuality
all individuals: 6658
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 1.231983e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 1.011e1

GenotypeQuality
all individuals: 6403
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2531
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GenotypeQuality
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GenotypeQuality
all individuals: 7245
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GenotypeQuality
all individuals: 6984
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4778
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variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43380
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.237432e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.682e1

VQSLOD
type: SiteQuality
SIO_000300: -5.445e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 1407
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 292
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GenotypeQuality
all individuals: 421
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 8
allele frequency: 1.107419712070875e-3
allele num: 7224
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 9.328358208955224e-4
allele num: 11792
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.044140030441401e-4
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 4.828696252011957e-4
allele num: 43490
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.736e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

DP
type: SiteQuality
SIO_000300: 1.243415e6

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 4524
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GenotypeQuality
all individuals: 623
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.922165820642978e-4
allele num: 11820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

FS
type: SiteQuality
SIO_000300: 5.68e0

VQSLOD
type: SiteQuality
SIO_000300: -9.636e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

QD
type: SiteQuality
SIO_000300: 8.51e0

DP
type: SiteQuality
SIO_000300: 1.249512e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

GenotypeQuality
all individuals: 1165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9821
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1710
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GenotypeQuality
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GenotypeQuality
all individuals: 6411
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GenotypeQuality
all individuals: 760
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GenotypeQuality
all individuals: 626
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GenotypeQuality
all individuals: 1123
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GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.315316813570597e-5
allele num: 12026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

DP
type: SiteQuality
SIO_000300: 1.29196e6

VQSLOD
type: SiteQuality
SIO_000300: -1.806e0

FS
type: SiteQuality
SIO_000300: 1.265e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.004e0

QD
type: SiteQuality
SIO_000300: 2.806e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 1030
bin: 7.75e1
variant carriers: 647

GenotypeQuality
all individuals: 729
bin: 5.75e1
variant carriers: 647

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 1398
bin: 5.25e1
variant carriers: 1218

GenotypeQuality
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bin: 7.5e0
variant carriers: 230

GenotypeQuality
all individuals: 1522
bin: 4.75e1
variant carriers: 1211

GenotypeQuality
all individuals: 2685
bin: 3.25e1
variant carriers: 856

GenotypeQuality
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variant carriers: 25986

GenotypeQuality
all individuals: 681
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variant carriers: 255

GenotypeQuality
all individuals: 4842
bin: 6.25e1
variant carriers: 948

African
type: Population
allele count: 4104
allele frequency: 5.260189694950013e-1
allele num: 7802
num of homozygotes: 1011

East Asian
type: Population
allele count: 5106
allele frequency: 6.613989637305699e-1
allele num: 7720
num of homozygotes: 1621

South Asian
type: Population
allele count: 4375
allele frequency: 3.346336239865382e-1
allele num: 13074
num of homozygotes: 715

Latino
type: Population
allele count: 4763
allele frequency: 5.144739684597105e-1
allele num: 9258
num of homozygotes: 1091

European (Finnish)
type: Population
allele count: 1871
allele frequency: 4.65191447041273e-1
allele num: 4022
num of homozygotes: 380

European (Non-Finnish)
type: Population
allele count: 23368
allele frequency: 4.381116652292925e-1
allele num: 53338
num of homozygotes: 4517

Other
type: Population
allele count: 306
allele frequency: 4.693251533742331e-1
allele num: 652
num of homozygotes: 57

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-2

FS
type: SiteQuality
SIO_000300: 1.277e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
type: SiteQuality
SIO_000300: 1.509858e6

QD
type: SiteQuality
SIO_000300: 2.064e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 5.25e1
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GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.530973451327434e-5
allele num: 54240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1408e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 1.47635e6

VQSLOD
type: SiteQuality
SIO_000300: -3.629e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

GenotypeQuality
all individuals: 1064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.793464614943147e-5
allele num: 55758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.025220422390814e-4
allele num: 9754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.148e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.506808e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

FS
type: SiteQuality
SIO_000300: 9.901999999999999e0

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1018
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.483899688381065e-4
allele num: 13478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 4.466e0

MQ
type: SiteQuality
SIO_000300: 5.566e1

QD
type: SiteQuality
SIO_000300: 2.501e1

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.14e-1

DP
type: SiteQuality
SIO_000300: 1.544021e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.004621257785815e-4
allele num: 9954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.548389e6

QD
type: SiteQuality
SIO_000300: 1.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.106e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.056e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.233045622688039e-4
allele num: 8110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

FS
type: SiteQuality
SIO_000300: 1.721e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.433999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.18e0

DP
type: SiteQuality
SIO_000300: 1.563745e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3653
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variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.491863956980236e-5
allele num: 57276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.075e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.859e1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.94e-1

FS
type: SiteQuality
SIO_000300: 3.523e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.566382e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.142506142506142e-4
allele num: 8140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

DP
type: SiteQuality
SIO_000300: 1.594615e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.696928559307653e-5
allele num: 58930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.194e1

FS
type: SiteQuality
SIO_000300: 6.884e0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 1.64084e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.692047377326565e-5
allele num: 59100
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 720
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.649097e6

FS
type: SiteQuality
SIO_000300: 6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.671961210499916e-5
allele num: 59810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14230
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

FS
type: SiteQuality
SIO_000300: 6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

DP
type: SiteQuality
SIO_000300: 1.678797e6

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 87

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 497

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 96

GenotypeQuality
all individuals: 642
bin: 5.75e1
variant carriers: 432

GenotypeQuality
all individuals: 3765
bin: 2.25e1
variant carriers: 184

GenotypeQuality
all individuals: 1837
bin: 6.75e1
variant carriers: 709

GenotypeQuality
all individuals: 32710
bin: 9.75e1
variant carriers: 31463

GenotypeQuality
all individuals: 11256
bin: 6.25e1
variant carriers: 697

GenotypeQuality
all individuals: 857
bin: 7.25e1
variant carriers: 466

GenotypeQuality
all individuals: 694
bin: 3.25e1
variant carriers: 283

Other
type: Population
allele count: 345
allele frequency: 4.411764705882353e-1
allele num: 782
num of homozygotes: 61

South Asian
type: Population
allele count: 4865
allele frequency: 3.257667068434445e-1
allele num: 14934
num of homozygotes: 785

European (Finnish)
type: Population
allele count: 2293
allele frequency: 4.391037916507086e-1
allele num: 5222
num of homozygotes: 462

European (Non-Finnish)
type: Population
allele count: 25952
allele frequency: 4.181759587495972e-1
allele num: 62060
num of homozygotes: 5063

African
type: Population
allele count: 4626
allele frequency: 5.13657561625583e-1
allele num: 9006
num of homozygotes: 1134

Latino
type: Population
allele count: 5318
allele frequency: 4.900479174345743e-1
allele num: 10852
num of homozygotes: 1243

East Asian
type: Population
allele count: 5436
allele frequency: 6.45145976738666e-1
allele num: 8426
num of homozygotes: 1734

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.853e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

DP
type: SiteQuality
SIO_000300: 2.029681e6

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

GenotypeQuality
all individuals: 1089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61134386077989e-5
allele num: 62060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

DP
type: SiteQuality
SIO_000300: 2.029681e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

QD
type: SiteQuality
SIO_000300: 1.853e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 27901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667556029882604e-5
allele num: 59968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.653e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 4.755e0

DP
type: SiteQuality
SIO_000300: 1.484772e6

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 1457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21963
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.247193813918683e-4
allele num: 8018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 1.36908e6

FS
type: SiteQuality
SIO_000300: 1.696e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.069e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

GenotypeQuality
all individuals: 1797
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 484
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.21300339640951e-4
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.906875371507826e-5
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.269074048053955e-5
allele num: 56936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 6.05e0

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

DP
type: SiteQuality
SIO_000300: 1.36908e6

FS
type: SiteQuality
SIO_000300: 1.696e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.069e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3991
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754632229084784e-5
allele num: 56992
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.951475539710833e-4
allele num: 10098
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.002e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.366583e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 2751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.415227851684121e-4
allele num: 14132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 7.1e-1

DP
type: SiteQuality
SIO_000300: 1.357517e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

QD
type: SiteQuality
SIO_000300: 1.103e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

GenotypeQuality
all individuals: 392
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.223391240518718e-4
allele num: 8174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.772232658703435e-5
allele num: 56426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.099247479767145e-5
allele num: 14086
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 2.259e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.909e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

DP
type: SiteQuality
SIO_000300: 1.348777e6

QD
type: SiteQuality
SIO_000300: 2.859e1

GenotypeQuality
all individuals: 5038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5878
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.150218541522889e-4
allele num: 8694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.818696196904175e-4
allele num: 49486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.046751e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
all individuals: 3288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.262722672481178e-4
allele num: 48614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.818489289740699e-4
allele num: 7096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.801529099703542e-5
allele num: 12818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 1.032091e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.212878955521133e-5
allele num: 45190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7834
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 1.289e0

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

DP
type: SiteQuality
SIO_000300: 1.004194e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.487652484379649e-4
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45292
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.004137e6

QD
type: SiteQuality
SIO_000300: 1.629e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.73e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeQuality
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8032
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 3.539823008849557e-3
allele num: 1130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.839262861530586e-4
allele num: 7814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.700391089950689e-4
allele num: 11762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.501e0

QD
type: SiteQuality
SIO_000300: 1.638e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.46e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 2.467e0

DP
type: SiteQuality
SIO_000300: 5.21105e5

GenotypeQuality
all individuals: 873
bin: 3.25e1
variant carriers: 25

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 184

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 39

GenotypeQuality
all individuals: 5433
bin: 1.25e1
variant carriers: 99

GenotypeQuality
all individuals: 580
bin: 4.75e1
variant carriers: 72

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 135

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 210

GenotypeQuality
all individuals: 3582
bin: 6.25e1
variant carriers: 98

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 38

GenotypeQuality
all individuals: 1135
bin: 6.75e1
variant carriers: 40

European (Finnish)
type: Population
allele count: 31
allele frequency: 1.165413533834586e-1
allele num: 266
num of homozygotes: 1

East Asian
type: Population
allele count: 4
allele frequency: 3.5650623885918e-3
allele num: 1122
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 2.534395365677046e-2
allele num: 2762
num of homozygotes: 4

Other
type: Population
allele count: 22
allele frequency: 1.047619047619048e-1
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 3.289473684210526e-2
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 819
allele frequency: 6.985670419651996e-2
allele num: 11724
num of homozygotes: 22

South Asian
type: Population
allele count: 531
allele frequency: 6.779877425944841e-2
allele num: 7832
num of homozygotes: 21

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.526e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.770000000000001e-2

DP
type: SiteQuality
SIO_000300: 5.21045e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 873
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5433
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.5295121119072e-5
allele num: 11724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.770000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.526e1

DP
type: SiteQuality
SIO_000300: 5.21045e5

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
all individuals: 308
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 929
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7156
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.02803738317757e-2
allele num: 1070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

QD
type: SiteQuality
SIO_000300: 1.113e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.122e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

DP
type: SiteQuality
SIO_000300: 5.0548e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 238
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5809
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.06457e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.97e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.236e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.141e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 4420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4749
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.289989680082559e-4
allele num: 7752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.61e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.164e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 3.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 5.08923e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: -6.606e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

MQ
type: SiteQuality
SIO_000300: 5.552e1

GenotypeQuality
all individuals: 1242
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4518
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 283
bin: 9.75e1
variant carriers: 54

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2466
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 309
bin: 7.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.692307692307692e-4
allele num: 2600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.829268292682927e-2
allele num: 164
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.15331100231899e-4
allele num: 7762
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.436781609195402e-3
allele num: 696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 4.789631855747558e-3
allele num: 10648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-2

QD
type: SiteQuality
SIO_000300: 1.287e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 5.10634e5

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22628
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1878
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.560229445506692e-4
allele num: 1046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 5.1645e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 9.462e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.67e-2

QD
type: SiteQuality
SIO_000300: 1.438e1

GenotypeQuality
all individuals: 22646
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5226
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.739938080495357e-4
allele num: 2584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.876876876876877e-4
allele num: 10656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.766e1

QD
type: SiteQuality
SIO_000300: 1.174e1

DP
type: SiteQuality
SIO_000300: 5.19691e5

FS
type: SiteQuality
SIO_000300: 1.162e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.49e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 439
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5202
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 4.697482149567831e-4
allele num: 10644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.885003885003885e-4
allele num: 2574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1058
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.63e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.958e0

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.19986e5