3-142720479-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720479
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720479
    reference: chr 3
allele count: 1
allele frequency: 8.453228287883143e-6
allele num: 118298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.9C>G
  hgvsp: ENSP00000430816.1:p.Asp3Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.11C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.9C>G
  hgvsp: ENSP00000418563.1:p.Asp3Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1175C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.28C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.9C>G
  hgvsp: ENSP00000418465.1:p.Asp3Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3143C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.15C>G
  hgvsp: ENSP00000420210.2:p.Asp5Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.9C>G
  hgvsp: ENSP00000422011.1:p.Asp3Glu
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp3Glu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-142720480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720480
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720480
    reference: chr 3
allele count: 1
allele frequency: 8.450656616019065e-6
allele num: 118334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1174A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.10A>G
  hgvsp: ENSP00000418465.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.16A>G
  hgvsp: ENSP00000420210.2:p.Lys6Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.10A>G
  hgvsp: ENSP00000418563.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.12A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.10A>G
  hgvsp: ENSP00000430816.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.10A>G
  hgvsp: ENSP00000422011.1:p.Lys4Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3144A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.29A>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys4Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

3-142720484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720484
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720484
    reference: chr 3
allele count: 1
allele frequency: 8.444519506840061e-6
allele num: 118420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.14C>T
  hgvsp: ENSP00000418465.1:p.Thr5Met
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.14C>T
  hgvsp: ENSP00000430816.1:p.Thr5Met
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.16C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.33C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1170C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.14C>T
  hgvsp: ENSP00000418563.1:p.Thr5Met
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.20C>T
  hgvsp: ENSP00000420210.2:p.Thr7Met
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.14C>T
  hgvsp: ENSP00000422011.1:p.Thr5Met
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3148C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr5Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

3-142720486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720486
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720486
    reference: chr 3
allele count: 2
allele frequency: 1.688333614722269e-5
allele num: 118460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.16C>T
  hgvsp: ENSP00000430816.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.35C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.16C>T
  hgvsp: ENSP00000422011.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3150C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1168C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.16C>T
  hgvsp: ENSP00000418563.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.18C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.16C>T
  hgvsp: ENSP00000418465.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.22C>T
  hgvsp: ENSP00000420210.2:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro6Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-142720487-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720487
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720487
    reference: chr 3
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.19C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.17C>A
  hgvsp: ENSP00000422011.1:p.Pro6Gln
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.17C>A
  hgvsp: ENSP00000430816.1:p.Pro6Gln
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.17C>A
  hgvsp: ENSP00000418465.1:p.Pro6Gln
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.23C>A
  hgvsp: ENSP00000420210.2:p.Pro8Gln
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.17C>A
  hgvsp: ENSP00000418563.1:p.Pro6Gln
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1167C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.36C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3151C>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro6Gln
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-142720487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720487
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720487
    reference: chr 3
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.17C>T
  hgvsp: ENSP00000418563.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.17C>T
  hgvsp: ENSP00000418465.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.17C>T
  hgvsp: ENSP00000430816.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.17C>T
  hgvsp: ENSP00000422011.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.23C>T
  hgvsp: ENSP00000420210.2:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.36C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1167C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.19C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3151C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro6Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-142720488-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720488
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720488
    reference: chr 3
allele count: 1
allele frequency: 8.439245868989148e-6
allele num: 118494
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.18A>T
  hgvsp: ENST00000473835.2:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.20A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.18A>T
  hgvsp: ENST00000488497.3:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.37A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.18A>T
  hgvsp: ENST00000493598.2:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.18A>T
  hgvsp: ENST00000493782.1:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1166A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.24A>T
  hgvsp: ENST00000463563.2:c.24A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3152A>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro6Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-142720493-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720493
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720493
    reference: chr 3
allele count: 7
allele frequency: 5.910963993785044e-5
allele num: 118424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.29G>C
  hgvsp: ENSP00000420210.2:p.Gly10Ala
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.23G>C
  hgvsp: ENSP00000418563.1:p.Gly8Ala
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.25G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1161G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.42G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.23G>C
  hgvsp: ENSP00000422011.1:p.Gly8Ala
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3157G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.23G>C
  hgvsp: ENSP00000430816.1:p.Gly8Ala
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.23G>C
  hgvsp: ENSP00000418465.1:p.Gly8Ala
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly8Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

3-142720494-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720494
    reference: chr 3
allele count: 1
allele frequency: 8.443949066099234e-6
allele num: 118428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1160A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.24A>T
  hgvsp: ENST00000473835.2:c.24A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.43A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.24A>T
  hgvsp: ENST00000493782.1:c.24A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.26A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.30A>T
  hgvsp: ENST00000463563.2:c.30A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3158A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.24A>T
  hgvsp: ENST00000488497.3:c.24A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.24A>T
  hgvsp: ENST00000493598.2:c.24A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly8Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-142720496-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720496
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720496
    reference: chr 3
allele count: 1
allele frequency: 8.450799445627557e-6
allele num: 118332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.26C>A
  hgvsp: ENSP00000430816.1:p.Ser9Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.26C>A
  hgvsp: ENSP00000418465.1:p.Ser9Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.32C>A
  hgvsp: ENSP00000420210.2:p.Ser11Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.45C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.26C>A
  hgvsp: ENSP00000418563.1:p.Ser9Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.26C>A
  hgvsp: ENSP00000422011.1:p.Ser9Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.28C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1158C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3160C>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser9Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-142720496-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720496
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720496
    reference: chr 3
allele count: 1
allele frequency: 8.450799445627557e-6
allele num: 118332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.32C>G
  hgvsp: ENSP00000420210.2:p.Ser11Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.26C>G
  hgvsp: ENSP00000418465.1:p.Ser9Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.28C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3160C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1158C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.45C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.26C>G
  hgvsp: ENSP00000418563.1:p.Ser9Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.26C>G
  hgvsp: ENSP00000430816.1:p.Ser9Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.26C>G
  hgvsp: ENSP00000422011.1:p.Ser9Cys
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser9Cys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-142720496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720496
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720496
    reference: chr 3
allele count: 1
allele frequency: 8.450799445627557e-6
allele num: 118332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3160C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1158C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.26C>T
  hgvsp: ENSP00000418563.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.26C>T
  hgvsp: ENSP00000422011.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.32C>T
  hgvsp: ENSP00000420210.2:p.Ser11Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.26C>T
  hgvsp: ENSP00000430816.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.26C>T
  hgvsp: ENSP00000418465.1:p.Ser9Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.28C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.45C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser9Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

3-142720498-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720498
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720498
    reference: chr 3
allele count: 1
allele frequency: 8.454371755634839e-6
allele num: 118282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.47C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.28C>G
  hgvsp: ENSP00000430816.1:p.Gln10Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.34C>G
  hgvsp: ENSP00000420210.2:p.Gln12Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.28C>G
  hgvsp: ENSP00000418465.1:p.Gln10Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3162C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1156C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.28C>G
  hgvsp: ENSP00000418563.1:p.Gln10Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.28C>G
  hgvsp: ENSP00000422011.1:p.Gln10Glu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.30C>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln10Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

3-142720508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720508
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720508
    reference: chr 3
allele count: 1
allele frequency: 8.478887569950822e-6
allele num: 117940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.38G>A
  hgvsp: ENSP00000418465.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.38G>A
  hgvsp: ENSP00000422011.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.44G>A
  hgvsp: ENSP00000420210.2:p.Ser15Asn
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.38G>A
  hgvsp: ENSP00000430816.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.38G>A
  hgvsp: ENSP00000418563.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3172G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.40G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1146G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.57G>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35413
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser13Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

3-142720511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720511
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720511
    reference: chr 3
allele count: 1
allele frequency: 8.493001766544367e-6
allele num: 117744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3175C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.60C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.43C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.41C>T
  hgvsp: ENSP00000418563.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.41C>T
  hgvsp: ENSP00000430816.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.41C>T
  hgvsp: ENSP00000418465.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.41C>T
  hgvsp: ENSP00000422011.1:p.Ser14Leu
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1143C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.47C>T
  hgvsp: ENSP00000420210.2:p.Ser16Leu
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser14Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-142720512-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720512
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720512
    reference: chr 3
allele count: 1
allele frequency: 8.49733183780293e-6
allele num: 117684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.42A>G
  hgvsp: ENST00000488497.3:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.44A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1142A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.42A>G
  hgvsp: ENST00000493782.1:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3176A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.42A>G
  hgvsp: ENST00000493598.2:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.48A>G
  hgvsp: ENST00000463563.2:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.42A>G
  hgvsp: ENST00000473835.2:c.42A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.61A>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser14Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

3-142720535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720535
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720535
    reference: chr 3
allele count: 1
allele frequency: 8.624109560687859e-6
allele num: 115954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3199C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+20C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3968
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-142720536-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720536
    reference: chr 3
allele count: 1
allele frequency: 8.625597322614591e-6
allele num: 115934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3200G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+21G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+21G>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3967
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

3-142720539-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720539
    reference: chr 3
allele count: 1
allele frequency: 8.629170046424936e-6
allele num: 115886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3203A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+24A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+24A>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

3-142720542-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720542
    reference: chr 3
allele count: 1
allele frequency: 8.646480017984679e-6
allele num: 115654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3206C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+27C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+27C>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-142720542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720542
    reference: chr 3
allele count: 156
allele frequency: 1.34885088280561e-3
allele num: 115654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3206C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+27C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+27C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22316
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-142720546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720546
    reference: chr 3
allele count: 6
allele frequency: 5.200388295659409e-5
allele num: 115376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3210G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+31G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+31G>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

3-142720547-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720547
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720547
    reference: chr 3
allele count: 2
allele frequency: 1.733823427422151e-5
allele num: 115352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3211G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+32G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+32G>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

3-142720550-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720550
    reference: chr 3
allele count: 1
allele frequency: 8.700342793506064e-6
allele num: 114938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+35C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3214C>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

3-142720552-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720552
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720552
    reference: chr 3
allele count: 9
allele frequency: 7.839994424892854e-5
allele num: 114796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+37A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3216A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+37A>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17146
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 9.75e1
  variant carriers: 9
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-142720554-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720554
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720554
    reference: chr 3
allele count: 4
allele frequency: 3.497420652268951e-5
allele num: 114370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+39C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3218C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+39C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6589
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-142720558-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142720558
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142720558
    reference: chr 3
allele count: 1
allele frequency: 8.794146616012382e-6
allele num: 113712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1139+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.51+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.45+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.30+3222G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.45+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.47+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.45+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.45+43G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.64+43G>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-142729607-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729607
    reference: chr 3
allele count: 3
allele frequency: 2.929916399718728e-5
allele num: 102392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1457G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-50G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-50G>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6143
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS

3-142729611-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729611
    reference: chr 3
allele count: 1
allele frequency: 9.777464898901012e-6
allele num: 102276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1453G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-46G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-46G>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6533
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-142729617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729617
    reference: chr 3
allele count: 1
allele frequency: 9.720818104051637e-6
allele num: 102872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1447G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-40G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-40G>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7442
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

3-142729626-AATT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729626
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729623
    reference: chr 3
allele count: 1
allele frequency: 9.580012262415695e-6
allele num: 104384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-27_52-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1434_31-1432delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-27_46-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-27_65-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-27_46-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-27_-1138-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-27_-45-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-27_48-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-27_46-25delATT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-27_46-25delATT
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: AATT
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-142729627-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729627
    reference: chr 3
allele count: 1
allele frequency: 9.5565749235474e-6
allele num: 104640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1437A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-30A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-30A>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-142729629-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729629
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729629
    reference: chr 3
allele count: 1
allele frequency: 9.524172349422835e-6
allele num: 104996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1435T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-28T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-28T>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3830
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

3-142729631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729631
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729631
    reference: chr 3
allele count: 1
allele frequency: 9.466290539389234e-6
allele num: 105638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1433T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-26T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-26T>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-142729633-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729633
    reference: chr 3
allele count: 1
allele frequency: 9.413005007718664e-6
allele num: 106236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1431G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-24G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-24G>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

3-142729648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729648
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729648
    reference: chr 3
allele count: 71
allele frequency: 6.301924305900732e-4
allele num: 112664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.52-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-45-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.65-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.46-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.46-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.46-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1416T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.46-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.48-9T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1138-9T>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34281
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-142729672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729672
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729672
    reference: chr 3
allele count: 14
allele frequency: 1.191286589516678e-4
allele num: 117520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.67G>A
  hgvsp: ENSP00000420210.2:p.Val23Ile
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.61G>A
  hgvsp: ENSP00000422011.1:p.Val21Ile
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.61G>A
  hgvsp: ENSP00000418563.1:p.Val21Ile
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.61G>A
  hgvsp: ENSP00000430816.1:p.Val21Ile
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.80G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1123G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.61G>A
  hgvsp: ENSP00000418465.1:p.Val21Ile
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.63G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1392G>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6190
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val21Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-142729676-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729676
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729676
    reference: chr 3
allele count: 1
allele frequency: 8.494156020657787e-6
allele num: 117728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.65A>C
  hgvsp: ENSP00000422011.1:p.His22Pro
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.71A>C
  hgvsp: ENSP00000420210.2:p.His24Pro
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.84A>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1119A>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.65A>C
  hgvsp: ENSP00000418465.1:p.His22Pro
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.65A>C
  hgvsp: ENSP00000430816.1:p.His22Pro
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.67A>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.65A>C
  hgvsp: ENSP00000418563.1:p.His22Pro
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1388A>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-26A>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His22Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-142729682-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729682
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729682
    reference: chr 3
allele count: 1
allele frequency: 8.475438180153914e-6
allele num: 117988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.73C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.71C>G
  hgvsp: ENSP00000422011.1:p.Ser24Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.71C>G
  hgvsp: ENSP00000418563.1:p.Ser24Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.77C>G
  hgvsp: ENSP00000420210.2:p.Ser26Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-20C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.71C>G
  hgvsp: ENSP00000418465.1:p.Ser24Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1382C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1113C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.71C>G
  hgvsp: ENSP00000430816.1:p.Ser24Cys
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.90C>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37288
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser24Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-142729682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729682
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729682
    reference: chr 3
allele count: 1
allele frequency: 8.475438180153914e-6
allele num: 117988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.71C>T
  hgvsp: ENSP00000430816.1:p.Ser24Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.77C>T
  hgvsp: ENSP00000420210.2:p.Ser26Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.73C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.71C>T
  hgvsp: ENSP00000418563.1:p.Ser24Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1113C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.71C>T
  hgvsp: ENSP00000422011.1:p.Ser24Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.71C>T
  hgvsp: ENSP00000418465.1:p.Ser24Phe
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.90C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1382C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser24Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

3-142729699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729699
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729699
    reference: chr 3
allele count: 2
allele frequency: 1.695145104420938e-5
allele num: 117984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.107C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.90C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.94C>T
  hgvsp: ENSP00000420210.2:p.His32Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.88C>T
  hgvsp: ENSP00000418563.1:p.His30Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.88C>T
  hgvsp: ENSP00000418465.1:p.His30Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.88C>T
  hgvsp: ENSP00000422011.1:p.His30Tyr
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1365C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1096C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-3C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.88C>T
  hgvsp: ENSP00000430816.1:p.His30Tyr
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His30Tyr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-142729700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729700
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729700
    reference: chr 3
allele count: 3
allele frequency: 2.543321238427888e-5
allele num: 117956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.89A>G
  hgvsp: ENSP00000430816.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.89A>G
  hgvsp: ENSP00000422011.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1364A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1095A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.91A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.89A>G
  hgvsp: ENSP00000418563.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.89A>G
  hgvsp: ENSP00000418465.1:p.His30Arg
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-2A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.108A>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.95A>G
  hgvsp: ENSP00000420210.2:p.His32Arg
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36095
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His30Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-142729709-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729709
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729708
    reference: chr 3
allele count: 6
allele frequency: 5.101346755543464e-5
allele num: 117616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1354delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+9delA
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+9delA
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34488
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: TA
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

3-142729711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729711
    reference: chr 3
allele count: 2
allele frequency: 1.701432606254466e-5
allele num: 117548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+10G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1353G>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

3-142729711-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729711
    reference: chr 3
allele count: 6
allele frequency: 5.104297818763399e-5
allele num: 117548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+10G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1353G>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+10G>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4593
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-142729711-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729711
    reference: chr 3
allele count: 2
allele frequency: 1.701432606254466e-5
allele num: 117548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1353G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+10G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+10G>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

3-142729713-AGGCAATCTTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729713
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729703
    reference: chr 3
allele count: 1
allele frequency: 8.514551368288405e-6
allele num: 117446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37447
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: AGGCAATCTTT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-142729715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729715
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729715
    reference: chr 3
allele count: 3
allele frequency: 2.55732674111329e-5
allele num: 117310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1349G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+14G>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+14G>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-142729716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729716
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729716
    reference: chr 3
allele count: 3
allele frequency: 2.55867903930131e-5
allele num: 117248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1348C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+15C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+15C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-142729717-AATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729717
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729714
    reference: chr 3
allele count: 2
allele frequency: 1.705320600272851e-5
allele num: 117280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+17_-1+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+17_96+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+17_90+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+17_90+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+17_109+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+17_90+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+17_-1094+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+17_92+19delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1346_31-1344delATC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+17_90+19delATC
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: AATC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-142729718-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729718
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729718
    reference: chr 3
allele count: 1
allele frequency: 8.529948649709128e-6
allele num: 117234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1346A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+17A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+17A>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-142729720-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729720
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729721
    reference: chr 3
allele count: 2
allele frequency: 1.707737759789607e-5
allele num: 117114
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1341dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+22dupT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+22dupT
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

3-142729721-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729721
    reference: chr 3
allele count: 1
allele frequency: 8.547008547008548e-6
allele num: 117000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1343T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+20T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+20T>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

3-142729726-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729726
    reference: chr 3
allele count: 1
allele frequency: 8.571771442286263e-6
allele num: 116662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+25C>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1338C>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum

3-142729726-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729725
    reference: chr 3
allele count: 1
allele frequency: 8.571771442286263e-6
allele num: 116662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1332delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+31delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+31delT
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: CT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-142729726-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729724
    reference: chr 3
allele count: 3
allele frequency: 2.571531432685879e-5
allele num: 116662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+30_90+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+30_90+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+30_92+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+30_-1+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+30_90+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+30_109+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+30_90+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1333_31-1332delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+30_-1094+31delTT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+30_96+31delTT
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: CTT
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-142729728-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729728
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729728
    reference: chr 3
allele count: 19
allele frequency: 1.628106255355613e-4
allele num: 116700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1336T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+27T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+27T>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10048
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26381
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

3-142729737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729737
    reference: chr 3
allele count: 1
allele frequency: 8.619946556331351e-6
allele num: 116010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1327T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+36T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+36T>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-142729749-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729749
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729746
    reference: chr 3
allele count: 9
allele frequency: 7.842453816660857e-5
allele num: 114760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1311_31-1309delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+52_90+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+52_90+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+52_96+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+52_109+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+52_-1094+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+52_92+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+52_-1+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+52_90+54delCTC
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+52_90+54delCTC
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20745
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4823
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: TCTC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-142729750-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729750
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729750
    reference: chr 3
allele count: 1
allele frequency: 8.734692451478784e-6
allele num: 114486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1314C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+49C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+49C>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

3-142729750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142729750
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142729750
    reference: chr 3
allele count: 1
allele frequency: 8.734692451478784e-6
allele num: 114486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.90+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-1314C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.-1+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1094+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.96+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.90+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.92+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.90+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.109+49C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.90+49C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-142730747-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730747
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730747
    reference: chr 3
allele count: 4
allele frequency: 3.401360544217687e-4
allele num: 11760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-317T>C
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-317T>C
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/3-142730754-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730754
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730754
    reference: chr 3
allele count: 1
allele frequency: 8.461668641056016e-5
allele num: 11818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-310C>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-310C>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

3-142730766-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730766
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730766
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 12004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-298A>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-298A>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

3-142730773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730773
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730773
    reference: chr 3
allele count: 7
allele frequency: 5.798542080848244e-4
allele num: 12072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-291C>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-291C>T
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

3-142730774-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730774
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730774
    reference: chr 3
allele count: 10
allele frequency: 7.980845969672786e-4
allele num: 12530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-290T>A
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-290T>A
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

3-142730774-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730774
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730774
    reference: chr 3
allele count: 8021
allele frequency: 6.401436552274541e-1
allele num: 12530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-290T>G
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-290T>G
  variant of: http://identifiers.org/hgnc/30855
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.75e1
  variant carriers: 586
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 834
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.25e1
  variant carriers: 753
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.5e0
  variant carriers: 680
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.5e0
  variant carriers: 772
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.25e1
  variant carriers: 438
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 738
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 606
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 131
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 61
num of homozygotes: 2588
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

3-142730780-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730780
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730779
    reference: chr 3
allele count: 1
allele frequency: 7.966857871255577e-5
allele num: 12552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-280delT
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000417831
  ensembl transcript: ENST00000485374
  gene symbol: U2SURP
  hgvsc: ENST00000485374.1:c.4delT
  hgvsp: ENSP00000417831.1:p.Phe2LeufsTer24
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-280delT
  variant of: http://identifiers.org/hgnc/30855
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe2LeufsTer24
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AT
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-142730806-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 142730806
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 142730806
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 12700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000475195
  ensembl transcript: ENST00000600150
  gene symbol: U2SURP
  hgvsc: ENST00000600150.1:c.31-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000417831
  ensembl transcript: ENST00000485374
  gene symbol: U2SURP
  hgvsc: ENST00000485374.1:c.26G>T
  hgvsp: ENSP00000417831.1:p.Glu10Ter
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000430816
  ensembl transcript: ENST00000488497
  gene symbol: U2SURP
  hgvsc: ENST00000488497.3:c.91-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000381027
  ensembl transcript: ENST00000397933
  gene symbol: U2SURP
  hgvsc: ENST00000397933.2:c.-1093-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000422011
  ensembl transcript: ENST00000493598
  gene symbol: U2SURP
  hgvsc: ENST00000493598.2:c.91-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418563
  ensembl transcript: ENST00000473835
  gene symbol: U2SURP
  hgvsc: ENST00000473835.2:c.91-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420210
  ensembl transcript: ENST00000463563
  gene symbol: U2SURP
  hgvsc: ENST00000463563.2:c.97-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000470400
  gene symbol: U2SURP
  hgvsc: ENST00000470400.1:n.93-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000418465
  ensembl transcript: ENST00000493782
  gene symbol: U2SURP
  hgvsc: ENST00000493782.1:c.91-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl transcript: ENST00000461591
  gene symbol: U2SURP
  hgvsc: ENST00000461591.1:n.110-258G>T
  variant of: http://identifiers.org/hgnc/30855
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163714
  ensembl protein: ENSP00000420575
  ensembl transcript: ENST00000465175
  gene symbol: U2SURP
  hgvsc: ENST00000465175.1:c.1-258G>T
  variant of: http://identifiers.org/hgnc/30855
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu10Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.784258608573436e-5
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

QD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.524078e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.979e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65534
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.778089887640449e-5
allele num: 11392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.04e0

DP
type: SiteQuality
SIO_000300: 1.524265e6

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

FS
type: SiteQuality
SIO_000300: 1.285e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.413e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

VQSLOD
type: SiteQuality
SIO_000300: -2.668e0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524715640533041e-5
allele num: 65586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.525139e6

GenotypeQuality
all individuals: 1337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.048594597890372e-5
allele num: 65604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.117e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.631e-1

QD
type: SiteQuality
SIO_000300: 7.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

FS
type: SiteQuality
SIO_000300: 3.983e0

DP
type: SiteQuality
SIO_000300: 1.525406e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

GenotypeQuality
all individuals: 42819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

FS
type: SiteQuality
SIO_000300: 2.037e0

DP
type: SiteQuality
SIO_000300: 1.525749e6

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.189650903689032e-5
allele num: 16156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.037e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.134e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.525749e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.186587478346944e-5
allele num: 16164
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

FS
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.52559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.753e0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42580
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.066617906990919e-4
allele num: 65628
num of homozygotes: 0

ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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FS
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.198090987975704e-5
allele num: 16134
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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FS
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MQ
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11382
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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European (Finnish)
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South Asian
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African
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Other
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European (Non-Finnish)
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MQ
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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African
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South Asian
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Other
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QD
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ClippingRankSum
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.532003554248246e-5
allele num: 65274
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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QD
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.74e-1

DP
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SIO_000300: 1.501343e6

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.736e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551349674216568e-5
allele num: 64460
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8344
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.392505e6

MQ
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InbreedingCoeff
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VQSLOD
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QD
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SIO_000300: 9.289999999999999e0

FS
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SIO_000300: 2.098e0

ClippingRankSum
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SIO_000300: 8.7e-1

MQRankSum
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SIO_000300: 7.64e-1

ReadPosRankSum
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SIO_000300: -5.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.364562118126272e-5
allele num: 15712
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9014
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6384
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64448
num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
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SIO_000300: 1.392136e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.632e0

InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552120196187993e-5
allele num: 64428
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.612e0

BaseQRankSum
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SIO_000300: 3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.38288e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64316
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.381620931716656e-5
allele num: 15670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 6.25e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

DP
type: SiteQuality
SIO_000300: 1.368613e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 9
allele frequency: 1.413760603204524e-3
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.099011132533118e-3
allele num: 64316
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.11358574610245e-4
allele num: 8980
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South Asian
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allele num: 15670
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 1
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allele num: 844
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FS
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15638
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 1.118568232662192e-4
allele num: 8940
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Other
type: Population
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.792531637678449e-5
allele num: 64164
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564406620568818e-5
allele num: 63922
num of homozygotes: 0

Latino
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
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African
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.330795e6

QD
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.705e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.284686536485098e-4
allele num: 15568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.76132521974307e-4
allele num: 8874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566268834382733e-5
allele num: 63846
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.32626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.301e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.624501631025734e-4
allele num: 11036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.319507e6

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.466e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58122766515923e-5
allele num: 63242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 1.310202e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.902185223725286e-4
allele num: 7688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

QD
type: SiteQuality
SIO_000300: 6.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.295e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.699e1

DP
type: SiteQuality
SIO_000300: 1.476836e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.822223841976749e-5
allele num: 54878
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.561e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

DP
type: SiteQuality
SIO_000300: 1.485711e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.810675744187731e-5
allele num: 55228
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.918e-1

FS
type: SiteQuality
SIO_000300: 2.442e0

DP
type: SiteQuality
SIO_000300: 1.521414e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.780119624038735e-5
allele num: 56176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6102
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MQ
type: SiteQuality
SIO_000300: 5.67e1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.673e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.026e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56314
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.72762645914397e-5
allele num: 10280
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
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MQRankSum
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FS
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DP
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VQSLOD
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MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 9.23e0

GenotypeQuality
all individuals: 2535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.505000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 1.613471e6

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.036e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 3866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.258178158027177e-4
allele num: 7948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.186e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -1.176e0

VQSLOD
type: SiteQuality
SIO_000300: -5.131e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

DP
type: SiteQuality
SIO_000300: 1.631218e6

QD
type: SiteQuality
SIO_000300: 1.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.898e0

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
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variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6930
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10418
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

QD
type: SiteQuality
SIO_000300: 1.204e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.651838e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.888e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 943
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6234
bin: 9.75e1
variant carriers: 72

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 4113
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variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
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variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36554
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 11
allele frequency: 1.010657846380007e-3
allele num: 10884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619590567504535e-5
allele num: 61744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 59
allele frequency: 6.595126313436173e-3
allele num: 8946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.760886e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 40441
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64918
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.335040546308152e-4
allele num: 9372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.990056818181819e-4
allele num: 11264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.166e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 2.526e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.963e0

DP
type: SiteQuality
SIO_000300: 1.818582e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 1974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
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variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
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variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 6179
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40445
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.064962726304579e-4
allele num: 9390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

DP
type: SiteQuality
SIO_000300: 1.820604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

GenotypeQuality
all individuals: 6180
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1456
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variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1976
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534071733194244e-5
allele num: 65186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 1.14e1

FS
type: SiteQuality
SIO_000300: 2.944e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.823744e6

GenotypeQuality
all individuals: 1579
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6180
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 614
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GenotypeQuality
all individuals: 1456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40667
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.061120543293718e-4
allele num: 9424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.14e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

DP
type: SiteQuality
SIO_000300: 1.823744e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6180
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1454
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.333177788147457e-4
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65178
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e0

VQSLOD
type: SiteQuality
SIO_000300: -1.149e0

QD
type: SiteQuality
SIO_000300: 7.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

DP
type: SiteQuality
SIO_000300: 1.820726e6

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069556142181841e-5
allele num: 65156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.833922261484099e-5
allele num: 11320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

FS
type: SiteQuality
SIO_000300: 6.125e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 1.818988e6

QD
type: SiteQuality
SIO_000300: 9.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

GenotypeQuality
all individuals: 38298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6185
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 1598
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.404782237403928e-4
allele num: 9368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

FS
type: SiteQuality
SIO_000300: 1.277e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.806718e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.713e1

GenotypeQuality
all individuals: 719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 6188
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1943
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.081664098613251e-5
allele num: 64900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

QD
type: SiteQuality
SIO_000300: 1.506e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.804155e6

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6188
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 38164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 6.411626415900834e-4
allele num: 9358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

DP
type: SiteQuality
SIO_000300: 1.804155e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.151e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

QD
type: SiteQuality
SIO_000300: 1.506e1

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 126
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.070310101320233e-4
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.151e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.804155e6

QD
type: SiteQuality
SIO_000300: 1.506e1

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.06951871657754e-4
allele num: 9350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.285e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: -4.675e0

MQ
type: SiteQuality
SIO_000300: 5.554e1

VQSLOD
type: SiteQuality
SIO_000300: -9.247e-1

FS
type: SiteQuality
SIO_000300: 1.494e0

DP
type: SiteQuality
SIO_000300: 1.796631e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.439e0

QD
type: SiteQuality
SIO_000300: 9.0e-1

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6183
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 4525
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variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.873594803897077e-4
allele num: 16012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.789631e6

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

GenotypeQuality
all individuals: 1436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64708
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.874297138573035e-4
allele num: 16006
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.783253e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16016
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.773049645390071e-4
allele num: 11280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.62e-1

MQ
type: SiteQuality
SIO_000300: 5.858e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.709e0

QD
type: SiteQuality
SIO_000300: 8.76e0

DP
type: SiteQuality
SIO_000300: 1.782927e6

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545881770962157e-5
allele num: 64688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.81e-1

QD
type: SiteQuality
SIO_000300: 1.133e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 4.257e0

DP
type: SiteQuality
SIO_000300: 1.778535e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.364e0

VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 6181
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1575
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.250468925847193e-4
allele num: 15994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

FS
type: SiteQuality
SIO_000300: 7.056e0

DP
type: SiteQuality
SIO_000300: 1.771206e6

MQ
type: SiteQuality
SIO_000300: 6.083e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549234678069034e-5
allele num: 64548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 5.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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SIO_000300: -1.45e-1

MQRankSum
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SIO_000300: 2.15e0

BaseQRankSum
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SIO_000300: -1.788e0

DP
type: SiteQuality
SIO_000300: 1.759419e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554678026180778e-5
allele num: 64322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
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DP
type: SiteQuality
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554678026180778e-5
allele num: 64322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6496
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African
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allele frequency: 0.0e0
allele num: 9298
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.093e0

ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.254233036498181e-4
allele num: 15946
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.909479686386316e-5
allele num: 11224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.739204e6

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.085e1

QD
type: SiteQuality
SIO_000300: 1.946e1

FS
type: SiteQuality
SIO_000300: 5.093e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 19

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5542913985514e-5
allele num: 64338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.934651762682717e-3
allele num: 9304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.738238e6

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

FS
type: SiteQuality
SIO_000300: 2.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.583e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 23471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5081
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563966218329684e-5
allele num: 63940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 2.409e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

DP
type: SiteQuality
SIO_000300: 1.704231e6

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1927
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GenotypeQuality
all individuals: 821
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.566333808844508e-4
allele num: 8412
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.801801801801802e-4
allele num: 11100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.170577045022194e-5
allele num: 63080
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.092896174863388e-4
allele num: 9150
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.364562118126272e-5
allele num: 15712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

DP
type: SiteQuality
SIO_000300: 1.69019e6

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

FS
type: SiteQuality
SIO_000300: 1.0864e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

QD
type: SiteQuality
SIO_000300: 1.43e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 965
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4243
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1514
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variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62924
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.389776357827476e-5
allele num: 15650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.499e1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.691085e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.481e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62924
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.041591320072333e-5
allele num: 11060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.73e-1

DP
type: SiteQuality
SIO_000300: 1.691085e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.740476842970677e-4
allele num: 7298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.810575246949448e-4
allele num: 3442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.109e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 125
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.364628820960699e-4
allele num: 7328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

FS
type: SiteQuality
SIO_000300: 4.973e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.144e0

QD
type: SiteQuality
SIO_000300: 5.83e0

DP
type: SiteQuality
SIO_000300: 1.48756e5

GenotypeQuality
all individuals: 403
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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GenotypeQuality
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GenotypeQuality
all individuals: 417
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.5591e5

QD
type: SiteQuality
SIO_000300: 2.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3550
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.107011070110701e-2
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.339405304045004e-4
allele num: 7466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.544e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.532e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

DP
type: SiteQuality
SIO_000300: 1.60383e5

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

GenotypeQuality
all individuals: 88
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4531
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.184522242695446e-3
allele num: 7598
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.462686567164179e-3
allele num: 134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.970000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

DP
type: SiteQuality
SIO_000300: 2.34651e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.197e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

FS
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 2.273e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 57

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 38

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 84

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 249

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 110

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 72

GenotypeQuality
all individuals: 857
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 158

GenotypeQuality
all individuals: 1125
bin: 7.5e0
variant carriers: 472

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 278

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 81

GenotypeQuality
all individuals: 4531
bin: 9.75e1
variant carriers: 4523

GenotypeQuality
all individuals: 187
bin: 6.75e1
variant carriers: 111

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 73

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 147

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 93

GenotypeQuality
all individuals: 700
bin: 6.25e1
variant carriers: 89

Latino
type: Population
allele count: 134
allele frequency: 6.568627450980392e-1
allele num: 204
num of homozygotes: 45

European (Non-Finnish)
type: Population
allele count: 2429
allele frequency: 6.466986155484558e-1
allele num: 3756
num of homozygotes: 777

Other
type: Population
allele count: 96
allele frequency: 7.164179104477612e-1
allele num: 134
num of homozygotes: 31

African
type: Population
allele count: 470
allele frequency: 7.679738562091504e-1
allele num: 612
num of homozygotes: 181

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.0e0
allele num: 2
num of homozygotes: 1

East Asian
type: Population
allele count: 163
allele frequency: 7.276785714285714e-1
allele num: 224
num of homozygotes: 60

South Asian
type: Population
allele count: 4727
allele frequency: 6.221374045801527e-1
allele num: 7598
num of homozygotes: 1493

QD
type: SiteQuality
SIO_000300: 2.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.197e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.34651e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.970000000000001e0

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.314405888538381e-4
allele num: 7608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3766
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.79629e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

QD
type: SiteQuality
SIO_000300: 1.668e1

GenotypeQuality
all individuals: 5081
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.87544e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.638e0