1-156305642-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305642
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305642
    reference: chr 1
allele count: 3
allele frequency: 2.472106399459433e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.196A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.69A>G
  hgvsp: ENST00000478640.2:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.69A>G
  hgvsp: ENST00000368259.2:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.69A>G
  hgvsp: ENST00000496684.2:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.69A>G
  hgvsp: ENST00000415548.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-67A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.91A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-933A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.141A>G
  hgvsp: ENST00000446905.1:c.141A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.69A>G
  hgvsp: ENST00000295688.3:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.157A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-933A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*66A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-67A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-9-2229A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.141A>G
  hgvsp: ENST00000413555.1:c.141A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln23Gln
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/1-156305646-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305646
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.65T>G
  hgvsp: ENSP00000434232.1:p.Val22Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-71T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.137T>G
  hgvsp: ENSP00000413308.1:p.Val46Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.153T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-71T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.65T>G
  hgvsp: ENSP00000295688.3:p.Val22Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.65T>G
  hgvsp: ENSP00000357242.2:p.Val22Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-9-2233T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.137T>G
  hgvsp: ENSP00000388799.1:p.Val46Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-937T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.65T>G
  hgvsp: ENSP00000413431.1:p.Val22Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.65T>G
  hgvsp: ENSP00000435026.1:p.Val22Gly
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*62T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.192T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-937T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.87T>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val22Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

1-156305648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305648
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305648
    reference: chr 1
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.85A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.135A>G
  hgvsp: ENST00000446905.1:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.63A>G
  hgvsp: ENST00000415548.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.63A>G
  hgvsp: ENST00000496684.2:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-939A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-939A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-9-2235A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.63A>G
  hgvsp: ENST00000295688.3:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.63A>G
  hgvsp: ENST00000478640.2:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.63A>G
  hgvsp: ENST00000368259.2:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*60A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.190A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-73A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.151A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-73A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.135A>G
  hgvsp: ENST00000413555.1:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys21Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-156305656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305656
    reference: chr 1
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.77G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.127G>A
  hgvsp: ENSP00000388799.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.55G>A
  hgvsp: ENSP00000295688.3:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-947G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*52G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.127G>A
  hgvsp: ENSP00000413308.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-947G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-81G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.55G>A
  hgvsp: ENSP00000413431.1:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.143G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-9-2243G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-81G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.55G>A
  hgvsp: ENSP00000435026.1:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.55G>A
  hgvsp: ENSP00000357242.2:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.55G>A
  hgvsp: ENSP00000434232.1:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.182G>A
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly19Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-156305657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305657
    reference: chr 1
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.54C>T
  hgvsp: ENST00000368259.2:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.54C>T
  hgvsp: ENST00000295688.3:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.54C>T
  hgvsp: ENST00000478640.2:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.54C>T
  hgvsp: ENST00000415548.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-82C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-9-2244C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.126C>T
  hgvsp: ENST00000413555.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*51C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.126C>T
  hgvsp: ENST00000446905.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.54C>T
  hgvsp: ENST00000496684.2:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-948C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-82C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.181C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.142C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.76C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-948C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser18Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

1-156305664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305664
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305664
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*44G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-9-2251G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.47G>A
  hgvsp: ENSP00000435026.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-89G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.47G>A
  hgvsp: ENSP00000295688.3:p.Arg16His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.47G>A
  hgvsp: ENSP00000434232.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.69G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.119G>A
  hgvsp: ENSP00000413308.1:p.Arg40His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.174G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-955G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.47G>A
  hgvsp: ENSP00000413431.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.47G>A
  hgvsp: ENSP00000357242.2:p.Arg16His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.119G>A
  hgvsp: ENSP00000388799.1:p.Arg40His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-955G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.135G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-89G>A
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg16His
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-156305686-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305686
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305686
    reference: chr 1
allele count: 15
allele frequency: 1.237113402061856e-4
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-977A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.113A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-977A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-7A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2259A>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.32-7A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-156305695-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305695
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305695
    reference: chr 1
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-986T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-986T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2250T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.104T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-16T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-16T>G
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-156305698-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305698
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305700
    reference: chr 1
allele count: 3
allele frequency: 2.47581949625326e-5
allele num: 121172
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-21_32-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.99_100dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-21_32-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-21_104-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-21_159-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-21_32-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-21_32-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-21_-104-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2245_-10+2246dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-21_-104-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-21_54-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-21_32-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-991_95-990dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-21_*29-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-21_104-20dupTT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-991_32-990dupTT
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-156305707-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305707
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305707
    reference: chr 1
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-998T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.92T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-998T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-28T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2238T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-28T>G
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

1-156305711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305711
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305711
    reference: chr 1
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.88G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-1002G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-1002G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2234G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-32G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-32G>A
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-156305716-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305716
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305715
    reference: chr 1
allele count: 6
allele frequency: 4.957530488812506e-5
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-1008delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-1008delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2228delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.82delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-38delA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-38delA
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15581
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: CT
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-156305721-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305721
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305721
    reference: chr 1
allele count: 2
allele frequency: 1.654670306941342e-5
allele num: 120870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-1012G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-1012G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.78G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-42G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2224G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-42G>C
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-156305723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305723
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305723
    reference: chr 1
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-1014T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.76T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-1014T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2222T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-44T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-44T>C
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-156305725-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305725
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305725
    reference: chr 1
allele count: 2
allele frequency: 1.656589083077942e-5
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2220G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.74G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-1016G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-46G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-1016G>T
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-156305725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156305725
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156305725
    reference: chr 1
allele count: 12
allele frequency: 9.939534498467655e-5
allele num: 120730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+2220G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.32-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000490221
  gene symbol: CCT3
  hgvsc: ENST00000490221.1:n.74G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-1016G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.32-1016G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.32-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.54-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-104-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.32-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-104-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.32-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*29-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.32-46G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.159-46G>A
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-156306875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156306875
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156306875
    reference: chr 1
allele count: 2
allele frequency: 1.872659176029963e-4
allele num: 10680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-1196C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-105+593C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-2166C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-110C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.*23C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+1070C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-1196C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

1-156306918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156306918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156306918
    reference: chr 1
allele count: 2733
allele frequency: 2.727544910179641e-1
allele num: 10020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.145C>T
  hgvsp: ENSP00000357245.3:p.Arg49Trp
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-1239C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-105+550C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-153C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-1239C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-2209C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+1027C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+1027C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.5e0
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg49Trp
num of homozygotes: 357
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-156306971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156306971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156306971
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 3318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-105+497C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.92C>T
  hgvsp: ENSP00000357245.3:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-206C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-2262C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-1292C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-1292C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+974C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+974C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro31Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-156307901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307901
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307901
    reference: chr 1
allele count: 2
allele frequency: 5.443954488540476e-5
allele num: 36738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2222C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+561G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3192C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2222C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+44C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20010
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-156307906-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307906
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307906
    reference: chr 1
allele count: 1
allele frequency: 2.712379299121189e-5
allele num: 36868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2227G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2227G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3197G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+566C>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+39G>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-156307916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307916
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307916
    reference: chr 1
allele count: 3
allele frequency: 7.919746568109821e-5
allele num: 37880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2237C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+576G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2237C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3207C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+29C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+29C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22604
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-156307924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307924
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307924
    reference: chr 1
allele count: 1
allele frequency: 2.574135090609555e-5
allele num: 38848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3215G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2245G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+584C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+21G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2245G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+21G>C
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

1-156307935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307935
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307935
    reference: chr 1
allele count: 1
allele frequency: 2.426124508709787e-5
allele num: 41218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2256G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+595C>T
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2256G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3226G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+10G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+10G>A
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26103
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-156307935-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307935
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307934
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 41218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2257delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+596delA
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3227delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+9delT
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2257delT
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: CA
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-156307937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307937
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307937
    reference: chr 1
allele count: 1
allele frequency: 2.39704683829522e-5
allele num: 41718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2258C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.53+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-218+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-10+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-267+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3228C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.158+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.31+8C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+597G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2258C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.31+8C>T
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

1-156307948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307948
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307948
    reference: chr 1
allele count: 1
allele frequency: 2.279150332755949e-5
allele num: 43876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3239C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.155C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.28C>T
  hgvsp: ENSP00000435026.1:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.28C>T
  hgvsp: ENSP00000357242.2:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.28C>T
  hgvsp: ENSP00000434232.1:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.50C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-270C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.28C>T
  hgvsp: ENSP00000357245.3:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+608G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.28C>T
  hgvsp: ENSP00000413431.1:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2269C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.28C>T
  hgvsp: ENSP00000357241.3:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.28C>T
  hgvsp: ENSP00000295688.3:p.Leu10Phe
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2269C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-221C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu10Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-156307958-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307958
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307958
    reference: chr 1
allele count: 1
allele frequency: 2.206628712652809e-5
allele num: 45318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.18A>T
  hgvsp: ENST00000478640.2:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-231A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.18A>T
  hgvsp: ENST00000295688.3:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.18A>T
  hgvsp: ENST00000368258.3:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.18A>T
  hgvsp: ENST00000368259.2:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.145A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2279A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.18A>T
  hgvsp: ENST00000415548.1:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.18A>T
  hgvsp: ENST00000368262.3:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2279A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.40A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.18A>T
  hgvsp: ENST00000496684.2:c.18A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-280A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3249A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+618T>A
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro6Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-156307959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307959
    reference: chr 1
allele count: 1
allele frequency: 2.203905320227443e-5
allele num: 45374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.17C>T
  hgvsp: ENSP00000413431.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.17C>T
  hgvsp: ENSP00000357242.2:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2280C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.39C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-281C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3250C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.17C>T
  hgvsp: ENSP00000357241.3:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2280C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.17C>T
  hgvsp: ENSP00000295688.3:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.144C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.17C>T
  hgvsp: ENSP00000434232.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.17C>T
  hgvsp: ENSP00000357245.3:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-232C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.17C>T
  hgvsp: ENSP00000435026.1:p.Pro6Leu
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+619G>A
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro6Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

1-156307962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307962
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307962
    reference: chr 1
allele count: 1
allele frequency: 2.193174839898237e-5
allele num: 45596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.14G>A
  hgvsp: ENSP00000435026.1:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2283G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-284G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.36G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.14G>A
  hgvsp: ENSP00000295688.3:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.14G>A
  hgvsp: ENSP00000434232.1:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.14G>A
  hgvsp: ENSP00000357245.3:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-235G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.14G>A
  hgvsp: ENSP00000357241.3:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2283G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.14G>A
  hgvsp: ENSP00000357242.2:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.14G>A
  hgvsp: ENSP00000413431.1:p.Arg5His
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.141G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3253G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+622C>T
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg5His
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-156307966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307966
    reference: chr 1
allele count: 2
allele frequency: 4.393287057376329e-5
allele num: 45524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.10C>T
  hgvsp: ENSP00000435026.1:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3257C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.32C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.137C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2287C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-239C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.10C>T
  hgvsp: ENSP00000434232.1:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.10C>T
  hgvsp: ENSP00000357245.3:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.10C>T
  hgvsp: ENSP00000295688.3:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.10C>T
  hgvsp: ENSP00000413431.1:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-288C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2287C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+626G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.10C>T
  hgvsp: ENSP00000357242.2:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.10C>T
  hgvsp: ENSP00000357241.3:p.His4Tyr
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25616
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His4Tyr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/1-156307971-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307971
    reference: chr 1
allele count: 3
allele frequency: 6.505334374186833e-5
allele num: 46116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.5T>G
  hgvsp: ENSP00000413431.1:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.5T>G
  hgvsp: ENSP00000357242.2:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2292T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.5T>G
  hgvsp: ENSP00000357245.3:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.5T>G
  hgvsp: ENSP00000357241.3:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.5T>G
  hgvsp: ENSP00000434232.1:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.5T>G
  hgvsp: ENSP00000295688.3:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-36T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-244T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.5T>G
  hgvsp: ENSP00000435026.1:p.Met2Arg
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.132T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-293T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+631A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2292T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.27T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3262T>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11028
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met2Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

1-156307976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307976
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307976
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 46008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-249C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+636G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.22C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3267C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-298C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.127C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-1C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2297C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2297C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24841
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-156307979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307979
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 46012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-252C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.124C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2300C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+639G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2300C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-301C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3270C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.19C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-156307987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307987
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 45736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-52C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.11C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2308C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-309C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.116C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+647G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-260C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2308C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3278C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-12C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22927
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-156307989-AGAGCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307989
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307984
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 45742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-59_-55delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3285_95-3281delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-267_-263delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.4_8delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2315_104-2311delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-316_-312delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-19_-15delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2315_104-2311delGGCTC
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+651_-125+655delAGCCG
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.109_113delGGCTC
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22612
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: AGAGCC
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

1-156307990-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307990
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307990
    reference: chr 1
allele count: 1
allele frequency: 2.185123678000175e-5
allele num: 45764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-55C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.8C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2311C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3281C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-263C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-312C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-15C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.113C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2311C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+650G>C
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-156307997-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307997
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307997
    reference: chr 1
allele count: 2
allele frequency: 4.416570974295557e-5
allele num: 45284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000489870
  gene symbol: CCT3
  hgvsc: ENST00000489870.1:n.1C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3288C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-270C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-62C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-319C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+657G>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.106C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2318C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-22C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2318C>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21242
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-156307998-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307998
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307998
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 45058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-271A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+658T>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-63A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2319A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-23A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3289A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2319A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-320A>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.105A>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20892
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-156307999-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156307999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156307999
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 45070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-321T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3290T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2320T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-272T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413431
  ensembl transcript: ENST00000415548
  gene symbol: CCT3
  hgvsc: ENST00000415548.1:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2320T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-24T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-64T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+659A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.104T>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20845
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-156308007-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156308007
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156308007
    reference: chr 1
allele count: 1
allele frequency: 2.319217032329885e-5
allele num: 43118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-32G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-32G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-32G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-329G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-32G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-32G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2328G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-72G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3298G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-280G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.96G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-32G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+667C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2328G>C
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

1-156308010-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156308010
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156308010
    reference: chr 1
allele count: 1
allele frequency: 2.368433518071148e-5
allele num: 42222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3301C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-75C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+670G>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-35C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-283C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2331C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-35C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-332C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-35C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2331C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-35C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-35C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-35C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.93C>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

1-156308013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156308013
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156308013
    reference: chr 1
allele count: 4
allele frequency: 1.018226249872722e-4
allele num: 39284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-38C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-38C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-38C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-38C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-335C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2334C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2334C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-78C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3304C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-38C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-38C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.90C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+673G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-286C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20262
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

1-156308018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156308018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156308018
    reference: chr 1
allele count: 4
allele frequency: 1.051193104173237e-4
allele num: 38052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-43C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.85C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-83C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2339C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-43C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-43C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+678G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-340C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-291C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2339C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3309C>T
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-156308018-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156308018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156308018
    reference: chr 1
allele count: 1
allele frequency: 2.627982760433092e-5
allele num: 38052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-340C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2339C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+678G>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-43C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-291C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-83C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.85C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-43C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434232
  ensembl transcript: ENST00000496684
  gene symbol: CCT3
  hgvsc: ENST00000496684.2:c.-43C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-43C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3309C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-43C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-43C>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2339C>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-156308026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156308026
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156308026
    reference: chr 1
allele count: 1
allele frequency: 3.089852923000865e-5
allele num: 32364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357245
  ensembl transcript: ENST00000368262
  gene symbol: CCT3
  hgvsc: ENST00000368262.3:c.-51G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000435026
  ensembl transcript: ENST00000478640
  gene symbol: CCT3
  hgvsc: ENST00000478640.2:c.-51G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357244
  ensembl transcript: ENST00000368261
  gene symbol: CCT3
  hgvsc: ENST00000368261.3:c.-348G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357241
  ensembl transcript: ENST00000368258
  gene symbol: CCT3
  hgvsc: ENST00000368258.3:c.-51G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000295688
  ensembl transcript: ENST00000295688
  gene symbol: CCT3
  hgvsc: ENST00000295688.3:c.-51G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000434481
  ensembl transcript: ENST00000533194
  gene symbol: CCT3
  hgvsc: ENST00000533194.1:c.-91G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-2347G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000368256
  gene symbol: CCT3
  hgvsc: ENST00000368256.3:n.77G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000431543
  ensembl transcript: ENST00000472765
  gene symbol: CCT3
  hgvsc: ENST00000472765.2:c.-299G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000357242
  ensembl transcript: ENST00000368259
  gene symbol: CCT3
  hgvsc: ENST00000368259.2:c.-51G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-3317G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-2347G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-125+686C>T
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-156309499-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309499
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309499
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 120164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-50T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-27T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3820A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-27T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-50T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-27T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-50T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-27T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-50T>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3820A>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4790A>G
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-156309501-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309501
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309501
    reference: chr 1
allele count: 1
allele frequency: 8.321405984755183e-6
allele num: 120172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-25A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-25A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-48A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-25A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3822T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3822T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4792T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-25A>G
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11022
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-156309502-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309502
    reference: chr 1
allele count: 3
allele frequency: 2.496297159213833e-5
allele num: 120178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4793A>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-47T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-47T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3823A>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3823A>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-24T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-47T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-24T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-24T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-47T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-24T>G
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

1-156309508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309508
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309508
    reference: chr 1
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3829C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-41G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-18G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-18G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-41G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-18G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-41G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3829C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-41G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4799C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-18G>A
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

1-156309509-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309509
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309507
    reference: chr 1
allele count: 1
allele frequency: 8.319467554076538e-6
allele num: 120200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-38_-37delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-15_-23-14delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-15_-23-14delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-15_-23-14delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4802_95-4801delTA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-38_-37delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-38_-37delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3832_104-3831delTA
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-38_-37delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-15_-23-14delAT
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3832_104-3831delTA
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: CTA
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-156309511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309511
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309511
    reference: chr 1
allele count: 7
allele frequency: 5.822755327821125e-5
allele num: 120218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-38A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-15A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-38A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-38A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-38A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3832T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3832T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-15A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-15A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-15A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4802T>C
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23146
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

1-156309517-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309517
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309517
    reference: chr 1
allele count: 2
allele frequency: 1.663533678239316e-5
allele num: 120226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-32C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3838G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3838G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-9C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4808G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-32C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-9C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-9C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-9C>G
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-156309521-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309521
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309521
    reference: chr 1
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23-5C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-28C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23-5C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-28C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3842G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23-5C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23-5C>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3842G>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4812G>C
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-23-5C>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-156309526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309526
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309526
    reference: chr 1
allele count: 2
allele frequency: 1.663035705376594e-5
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3847C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3847C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4817C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/30636
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-23G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-156309528-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309528
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309528
    reference: chr 1
allele count: 1
allele frequency: 8.313934153641504e-6
allele num: 120280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4819T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3849T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3849T>G
  variant of: http://identifiers.org/hgnc/1616
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-21A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

1-156309531-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309531
    reference: chr 1
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3852T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4822T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3852T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-18A>G
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

1-156309533-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309533
    reference: chr 1
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3854T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4824T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3854T>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-16A>G
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

1-156309536-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309536
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309536
    reference: chr 1
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4827A>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3857A>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3857A>C
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-13T>G
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23813
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-156309543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309543
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309543
    reference: chr 1
allele count: 21
allele frequency: 1.746303657258802e-4
allele num: 120254
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4834C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3864C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3864C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13736
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10102
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23885
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-156309555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309555
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309555
    reference: chr 1
allele count: 21
allele frequency: 1.748426416225397e-4
allele num: 120108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3876G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.7C>T
  hgvsp: ENSP00000476780.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.7C>T
  hgvsp: ENSP00000357234.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3876G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.7C>T
  hgvsp: ENSP00000357236.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.7C>T
  hgvsp: ENSP00000357238.3:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.7C>T
  hgvsp: ENSP00000357237.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4846G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.7C>T
  hgvsp: ENSP00000357235.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.7C>T
  hgvsp: ENSP00000477074.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.7C>T
  hgvsp: ENSP00000477010.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13388
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10106
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Arg3Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-156309556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309556
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309556
    reference: chr 1
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.8G>A
  hgvsp: ENSP00000357234.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.8G>A
  hgvsp: ENSP00000357235.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3877C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.8G>A
  hgvsp: ENSP00000476780.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.8G>A
  hgvsp: ENSP00000357237.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.8G>A
  hgvsp: ENSP00000357238.3:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4847C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.8G>A
  hgvsp: ENSP00000357236.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3877C>T
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.8G>A
  hgvsp: ENSP00000477010.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.8G>A
  hgvsp: ENSP00000477074.1:p.Arg3Gln
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg3Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-156309561-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309561
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309561
    reference: chr 1
allele count: 1
allele frequency: 8.33694600993764e-6
allele num: 119948
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.13A>C
  hgvsp: ENSP00000357238.3:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.13A>C
  hgvsp: ENSP00000357236.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.13A>C
  hgvsp: ENSP00000357234.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.13A>C
  hgvsp: ENSP00000477074.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3882T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.13A>C
  hgvsp: ENSP00000476780.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4852T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3882T>G
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.13A>C
  hgvsp: ENSP00000357235.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.13A>C
  hgvsp: ENSP00000477010.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.13A>C
  hgvsp: ENSP00000357237.1:p.Thr5Pro
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr5Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

1-156309570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309570
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309570
    reference: chr 1
allele count: 2
allele frequency: 1.672940192388122e-5
allele num: 119550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.22C>T
  hgvsp: ENSP00000357235.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.22C>T
  hgvsp: ENSP00000357238.3:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.22C>T
  hgvsp: ENSP00000357237.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.22C>T
  hgvsp: ENSP00000477074.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4861G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.22C>T
  hgvsp: ENSP00000477010.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.22C>T
  hgvsp: ENSP00000357236.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.22C>T
  hgvsp: ENSP00000357234.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3891G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.22C>T
  hgvsp: ENSP00000476780.1:p.Pro8Ser
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3891G>A
  variant of: http://identifiers.org/hgnc/1616
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro8Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-156309575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156309575
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156309575
    reference: chr 1
allele count: 1
allele frequency: 8.381527114240214e-6
allele num: 119310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477074
  ensembl transcript: ENST00000470342
  gene symbol: TSACC
  hgvsc: ENST00000470342.1:c.27C>T
  hgvsp: ENST00000470342.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl transcript: ENST00000463132
  gene symbol: CCT3
  hgvsc: ENST00000463132.1:n.95-4866G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000413308
  ensembl transcript: ENST00000413555
  gene symbol: CCT3
  hgvsc: ENST00000413555.1:c.104-3896G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357236
  ensembl transcript: ENST00000368253
  gene symbol: TSACC
  hgvsc: ENST00000368253.2:c.27C>T
  hgvsp: ENST00000368253.2:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000476780
  ensembl transcript: ENST00000481479
  gene symbol: TSACC
  hgvsc: ENST00000481479.1:c.27C>T
  hgvsp: ENST00000481479.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163468
  ensembl protein: ENSP00000388799
  ensembl transcript: ENST00000446905
  gene symbol: CCT3
  hgvsc: ENST00000446905.1:c.104-3896G>A
  variant of: http://identifiers.org/hgnc/1616
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357237
  ensembl transcript: ENST00000368254
  gene symbol: TSACC
  hgvsc: ENST00000368254.1:c.27C>T
  hgvsp: ENST00000368254.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357234
  ensembl transcript: ENST00000368251
  gene symbol: TSACC
  hgvsc: ENST00000368251.1:c.27C>T
  hgvsp: ENST00000368251.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000477010
  ensembl transcript: ENST00000466306
  gene symbol: TSACC
  hgvsc: ENST00000466306.1:c.27C>T
  hgvsp: ENST00000466306.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357238
  ensembl transcript: ENST00000368255
  gene symbol: TSACC
  hgvsc: ENST00000368255.3:c.27C>T
  hgvsp: ENST00000368255.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163467
  ensembl protein: ENSP00000357235
  ensembl transcript: ENST00000368252
  gene symbol: TSACC
  hgvsc: ENST00000368252.1:c.27C>T
  hgvsp: ENST00000368252.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30636
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn9Asn
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 6947
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 669
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17110
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11333
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1724
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 864
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11436
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8261
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.171033e6

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

QD
type: SiteQuality
SIO_000300: 1.687e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeDepth
all individuals: 6946
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11321
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17111
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 864
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3952
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1282
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8261
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.944e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -4.665e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 2.170849e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.109e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

GenotypeDepth
all individuals: 6945
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12867
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 865
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17118
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 669
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1723
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11436
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24382
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.347e0

FS
type: SiteQuality
SIO_000300: 1.521e0

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 2.170841e6

GenotypeDepth
all individuals: 3952
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17126
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 865
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2187
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 382
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1283
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 458
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4824
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

Latino
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Other
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
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South Asian
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num of homozygotes: 0

African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.87e-1

VQSLOD
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Other
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African
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East Asian
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allele num: 8654
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DP
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VQSLOD
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8646
num of homozygotes: 0

European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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Latino
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African
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QD
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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Latino
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African
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South Asian
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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QD
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MQ
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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DP
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 9.024184815305017e-5
allele num: 66488
num of homozygotes: 0

Latino
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East Asian
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

South Asian
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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Latino
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South Asian
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FS
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MQRankSum
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Other
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Latino
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African
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European (Non-Finnish)
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DP
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MQ
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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MQ
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
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European (Non-Finnish)
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allele count: 11
allele frequency: 1.658474806259989e-4
allele num: 66326
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
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Latino
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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MQRankSum
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SIO_000300: 3.5e-2

VQSLOD
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MQ
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ReadPosRankSum
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SIO_000300: 5.669999999999999e-1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.680965147453083e-4
allele num: 7460
num of homozygotes: 0

FS
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SIO_000300: 1.782e0

ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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SIO_000300: -3.798e0

MQ
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SIO_000300: 5.875e1

DP
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InbreedingCoeff
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SIO_000300: -4.55e-2

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 90

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 29
allele frequency: 2.636363636363636e-1
allele num: 110
num of homozygotes: 4

European (Non-Finnish)
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allele count: 848
allele frequency: 3.386581469648562e-1
allele num: 2504
num of homozygotes: 124

East Asian
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allele count: 33
allele frequency: 2.5e-1
allele num: 132
num of homozygotes: 5

African
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allele count: 21
allele frequency: 1.235294117647059e-1
allele num: 170
num of homozygotes: 1

European (Finnish)
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allele count: 2
allele frequency: 3.333333333333333e-1
allele num: 6
num of homozygotes: 0

South Asian
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allele count: 1778
allele frequency: 2.534207525655644e-1
allele num: 7016
num of homozygotes: 219

Latino
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allele count: 22
allele frequency: 2.682926829268293e-1
allele num: 82
num of homozygotes: 4

MQ
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SIO_000300: 5.928e1

FS
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SIO_000300: 6.11e-1

BaseQRankSum
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SIO_000300: 4.15e-1

ReadPosRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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SIO_000300: 1.84e-1

VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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SIO_000300: 6.0e1

DP
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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African
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allele num: 4608
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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SIO_000300: 2.78e-1

FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 476
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 3.968253968253968e-3
allele num: 252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.449275362318841e-3
allele num: 690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.124946876328092e-4
allele num: 4706
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
SIO_000300: 1.391e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 8.63533e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.46e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.089427496865859e-4
allele num: 4786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

BaseQRankSum
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SIO_000300: 9.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.784e-1

ClippingRankSum
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SIO_000300: -7.11e-1

MQRankSum
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SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 5.716e0

InbreedingCoeff
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SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 8.88726e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.99e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.646840148698885e-5
allele num: 21520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

FS
type: SiteQuality
SIO_000300: 1.916e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.94e-2

QD
type: SiteQuality
SIO_000300: 5.03e0

DP
type: SiteQuality
SIO_000300: 9.30483e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 225
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

FS
type: SiteQuality
SIO_000300: 1.916e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 9.30483e5

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 5.03e0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.240694789081886e-3
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.36867e5

VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.21e-2

ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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bin: 5.25e1
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 23422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 1.066552901023891e-4
allele num: 9376
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e0

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 9.62992e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 4.100377234705593e-5
allele num: 24388
num of homozygotes: 0

South Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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DP
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 1.35e-1

QD
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SIO_000300: 1.109e1

ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.097353109891011e-5
allele num: 24406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 2.16e0

FS
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 4.074647542987532e-5
allele num: 24542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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MQ
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DP
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QD
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InbreedingCoeff
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SIO_000300: -2.01e-2

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 7.27e-1

BaseQRankSum
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SIO_000300: 9.340000000000001e-1

ReadPosRankSum
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SIO_000300: 7.27e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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allele count: 0
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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MQ
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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South Asian
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Latino
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European (Finnish)
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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FS
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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Latino
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South Asian
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East Asian
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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African
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East Asian
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Latino
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MQ
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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DP
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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Other
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 20132
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Latino
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Other
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East Asian
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European (Finnish)
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African
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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Latino
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South Asian
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VQSLOD
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.602e0

VQSLOD
type: SiteQuality
SIO_000300: -2.093e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

QD
type: SiteQuality
SIO_000300: 7.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.284e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.12e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

DP
type: SiteQuality
SIO_000300: 8.44768e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

FS
type: SiteQuality
SIO_000300: 3.309e0

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

DP
type: SiteQuality
SIO_000300: 2.117409e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1776
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GenotypeQuality
all individuals: 8308
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.735e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.209e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

DP
type: SiteQuality
SIO_000300: 2.118841e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8306
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variant carriers: 3

GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.622377622377622e-4
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

DP
type: SiteQuality
SIO_000300: 2.119701e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.44e0

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

FS
type: SiteQuality
SIO_000300: 1.215e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 1710
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 749
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.001e1

VQSLOD
type: SiteQuality
SIO_000300: -1.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: -1.227e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 2.126808e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

FS
type: SiteQuality
SIO_000300: 9.156000000000001e0

QD
type: SiteQuality
SIO_000300: 1.518e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 2.12818e6

MQ
type: SiteQuality
SIO_000300: 5.815e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.055520371543171e-4
allele num: 66318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 486
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015317814497648e-5
allele num: 66328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.136053e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -1.564e0

BaseQRankSum
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SIO_000300: -1.972e0

MQRankSum
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SIO_000300: -4.09e-1

DP
type: SiteQuality
SIO_000300: 2.1391e6

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 6.53e0

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.261e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
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SIO_000300: -9.51e-1

ReadPosRankSum
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SIO_000300: 1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.377e0

QD
type: SiteQuality
SIO_000300: 1.554e1

DP
type: SiteQuality
SIO_000300: 2.142816e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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BaseQRankSum
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DP
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SIO_000300: 2.143709e6

FS
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SIO_000300: 3.432e0

VQSLOD
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SIO_000300: -1.989e0

ClippingRankSum
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SIO_000300: -2.35e-1

ReadPosRankSum
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SIO_000300: -1.41e-1

QD
type: SiteQuality
SIO_000300: 8.449999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.823e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.087e0

ClippingRankSum
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SIO_000300: -2.58e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

MQRankSum
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SIO_000300: -1.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
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SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.144927e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.170554115759595e-5
allele num: 16206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
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SIO_000300: 7.099999999999999e-2

BaseQRankSum
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SIO_000300: -2.57e0

MQ
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SIO_000300: 5.974e1

ReadPosRankSum
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SIO_000300: -5.69e-1

MQRankSum
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SIO_000300: -1.259e0

FS
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QD
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ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 2.145576e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.16827041697508e-5
allele num: 16212
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 0
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QD
type: SiteQuality
SIO_000300: 7.58e0

MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.622377622377622e-4
allele num: 11440
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
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European (Non-Finnish)
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allele count: 17
allele frequency: 2.561938634034601e-4
allele num: 66356
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
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South Asian
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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African
type: Population
allele count: 2
allele frequency: 1.979414093428345e-4
allele num: 10104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.866280473087135e-4
allele num: 66288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 2.147615e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

GenotypeDepth
all individuals: 509
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8274
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.092e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.146753e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 8274
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2195
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variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34671
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.513e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.792e0

DP
type: SiteQuality
SIO_000300: 2.14454e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.26e-1

GenotypeDepth
all individuals: 207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7556
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8274
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33975
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030027573250917e-5
allele num: 66006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.393e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

DP
type: SiteQuality
SIO_000300: 2.136564e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.82e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.569e0

QD
type: SiteQuality
SIO_000300: 1.255e1

GenotypeDepth
all individuals: 1603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 723
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variant carriers: 0

GenotypeQuality
all individuals: 7524
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variant carriers: 0

GenotypeQuality
all individuals: 1628
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variant carriers: 0

GenotypeQuality
all individuals: 367
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 1906
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variant carriers: 0

GenotypeQuality
all individuals: 974
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 33527
bin: 6.25e1
variant carriers: 0