6-76380286-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380286
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380286
    reference: chr 6
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1221C>G
  hgvsp: ENSP00000321820.8:p.Ile407Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1242C>G
  hgvsp: ENSP00000359031.3:p.Ile414Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.89C>G
  hgvsp: ENSP00000422576.1:p.Ile30Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1242C>G
  hgvsp: ENSP00000402527.2:p.Ile414Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.30C>G
  hgvsp: ENSP00000441715.1:p.Ile10Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.912C>G
  hgvsp: ENSP00000391426.2:p.Ile304Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1221C>G
  hgvsp: ENSP00000359027.2:p.Ile407Met
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile414Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

6-76380291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380291
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380291
    reference: chr 6
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.35C>T
  hgvsp: ENSP00000441715.1:p.Thr12Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1226C>T
  hgvsp: ENSP00000321820.8:p.Thr409Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1247C>T
  hgvsp: ENSP00000359031.3:p.Thr416Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.94C>T
  hgvsp: ENSP00000422576.1:p.Thr32Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1226C>T
  hgvsp: ENSP00000359027.2:p.Thr409Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1247C>T
  hgvsp: ENSP00000402527.2:p.Thr416Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.917C>T
  hgvsp: ENSP00000391426.2:p.Thr306Ile
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr416Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-76380294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380294
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380294
    reference: chr 6
allele count: 1
allele frequency: 8.311584686736373e-6
allele num: 120314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1229C>T
  hgvsp: ENSP00000359027.2:p.Pro410Leu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1250C>T
  hgvsp: ENSP00000359031.3:p.Pro417Leu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1250C>T
  hgvsp: ENSP00000402527.2:p.Pro417Leu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.920C>T
  hgvsp: ENSP00000391426.2:p.Pro307Leu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1229C>T
  hgvsp: ENSP00000321820.8:p.Pro410Leu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.97C>T
  hgvsp: ENSP00000422576.1:p.Pro33Leu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.38C>T
  hgvsp: ENSP00000441715.1:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52403
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro417Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

6-76380302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380302
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380302
    reference: chr 6
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.928C>T
  hgvsp: ENSP00000391426.2:p.Arg310Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.46C>T
  hgvsp: ENSP00000441715.1:p.Arg16Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1237C>T
  hgvsp: ENSP00000321820.8:p.Arg413Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.105C>T
  hgvsp: ENSP00000422576.1:p.Arg36Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1258C>T
  hgvsp: ENSP00000402527.2:p.Arg420Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1258C>T
  hgvsp: ENSP00000359031.3:p.Arg420Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1237C>T
  hgvsp: ENSP00000359027.2:p.Arg413Cys
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg420Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

6-76380303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380303
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380303
    reference: chr 6
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.106G>A
  hgvsp: ENSP00000422576.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1238G>A
  hgvsp: ENSP00000321820.8:p.Arg413His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1259G>A
  hgvsp: ENSP00000359031.3:p.Arg420His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.929G>A
  hgvsp: ENSP00000391426.2:p.Arg310His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.47G>A
  hgvsp: ENSP00000441715.1:p.Arg16His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1238G>A
  hgvsp: ENSP00000359027.2:p.Arg413His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1259G>A
  hgvsp: ENSP00000402527.2:p.Arg420His
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg420His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

6-76380305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380305
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380305
    reference: chr 6
allele count: 2
allele frequency: 1.659999004000598e-5
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1240C>T
  hgvsp: ENSP00000321820.8:p.Arg414Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.49C>T
  hgvsp: ENSP00000441715.1:p.Arg17Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1261C>T
  hgvsp: ENSP00000359031.3:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1261C>T
  hgvsp: ENSP00000402527.2:p.Arg421Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.931C>T
  hgvsp: ENSP00000391426.2:p.Arg311Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1240C>T
  hgvsp: ENSP00000359027.2:p.Arg414Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.108C>T
  hgvsp: ENSP00000422576.1:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg421Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-76380306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380306
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380306
    reference: chr 6
allele count: 2
allele frequency: 1.659916340216453e-5
allele num: 120488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.109G>A
  hgvsp: ENSP00000422576.1:p.Arg37His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1262G>A
  hgvsp: ENSP00000359031.3:p.Arg421His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.932G>A
  hgvsp: ENSP00000391426.2:p.Arg311His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1241G>A
  hgvsp: ENSP00000359027.2:p.Arg414His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.50G>A
  hgvsp: ENSP00000441715.1:p.Arg17His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1262G>A
  hgvsp: ENSP00000402527.2:p.Arg421His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1241G>A
  hgvsp: ENSP00000321820.8:p.Arg414His
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg421His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-76380313-GTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380313
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380310
    reference: chr 6
allele count: 2
allele frequency: 1.659227795384028e-5
allele num: 120538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.941_943delTTT
  hgvsp: ENSP00000391426.2:p.Phe314del
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1271_1273delTTT
  hgvsp: ENSP00000359031.3:p.Phe424del
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.118_120delTTT
  hgvsp: ENSP00000422576.1:p.Phe40del
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1250_1252delTTT
  hgvsp: ENSP00000359027.2:p.Phe417del
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.59_61delTTT
  hgvsp: ENSP00000441715.1:p.Phe20del
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1271_1273delTTT
  hgvsp: ENSP00000402527.2:p.Phe424del
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1250_1252delTTT
  hgvsp: ENSP00000321820.8:p.Phe417del
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe424del
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: GTTT
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

6-76380322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380322
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380322
    reference: chr 6
allele count: 19
allele frequency: 1.576083349923684e-4
allele num: 120552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.125A>G
  hgvsp: ENST00000503501.1:c.125A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1257A>G
  hgvsp: ENST00000327284.8:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1278A>G
  hgvsp: ENST00000447266.2:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.948A>G
  hgvsp: ENST00000424947.2:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1278A>G
  hgvsp: ENST00000370014.3:c.1278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1257A>G
  hgvsp: ENST00000370010.2:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.66A>G
  hgvsp: ENST00000541192.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln426Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-76380333-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380333
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380333
    reference: chr 6
allele count: 2
allele frequency: 1.659613310098747e-5
allele num: 120510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1268A>T
  hgvsp: ENSP00000359027.2:p.Asp423Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.77A>T
  hgvsp: ENSP00000441715.1:p.Asp26Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1289A>T
  hgvsp: ENSP00000359031.3:p.Asp430Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.136A>T
  hgvsp: ENSP00000422576.1:p.Asp46Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.959A>T
  hgvsp: ENSP00000391426.2:p.Asp320Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1289A>T
  hgvsp: ENSP00000402527.2:p.Asp430Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1268A>T
  hgvsp: ENSP00000321820.8:p.Asp423Val
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp430Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-76380339-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380339
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380339
    reference: chr 6
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1274T>C
  hgvsp: ENSP00000359027.2:p.Leu425Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1295T>C
  hgvsp: ENSP00000402527.2:p.Leu432Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.142T>C
  hgvsp: ENSP00000422576.1:p.Leu48Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.83T>C
  hgvsp: ENSP00000441715.1:p.Leu28Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.965T>C
  hgvsp: ENSP00000391426.2:p.Leu322Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1274T>C
  hgvsp: ENSP00000321820.8:p.Leu425Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1295T>C
  hgvsp: ENSP00000359031.3:p.Leu432Ser
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu432Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

6-76380342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380342
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380342
    reference: chr 6
allele count: 32
allele frequency: 2.657719012657387e-4
allele num: 120404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.968C>T
  hgvsp: ENSP00000391426.2:p.Ala323Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.145C>T
  hgvsp: ENSP00000422576.1:p.Ala49Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1277C>T
  hgvsp: ENSP00000321820.8:p.Ala426Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1298C>T
  hgvsp: ENSP00000359031.3:p.Ala433Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1277C>T
  hgvsp: ENSP00000359027.2:p.Ala426Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1298C>T
  hgvsp: ENSP00000402527.2:p.Ala433Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.86C>T
  hgvsp: ENSP00000441715.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala433Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

6-76380348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380348
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380348
    reference: chr 6
allele count: 1
allele frequency: 8.311308366163002e-6
allele num: 120318
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1304G>A
  hgvsp: ENSP00000402527.2:p.Ser435Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1304G>A
  hgvsp: ENSP00000359031.3:p.Ser435Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.151G>A
  hgvsp: ENSP00000422576.1:p.Ser51Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1283G>A
  hgvsp: ENSP00000359027.2:p.Ser428Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1283G>A
  hgvsp: ENSP00000321820.8:p.Ser428Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.974G>A
  hgvsp: ENSP00000391426.2:p.Ser325Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.92G>A
  hgvsp: ENSP00000441715.1:p.Ser31Asn
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser435Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

6-76380352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380352
    reference: chr 6
allele count: 4
allele frequency: 3.326901324106727e-5
allele num: 120232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1287C>T
  hgvsp: ENST00000327284.8:c.1287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1308C>T
  hgvsp: ENST00000370014.3:c.1308C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1308C>T
  hgvsp: ENST00000447266.2:c.1308C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.96C>T
  hgvsp: ENST00000541192.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.155C>T
  hgvsp: ENST00000503501.1:c.155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.978C>T
  hgvsp: ENST00000424947.2:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1287C>T
  hgvsp: ENST00000370010.2:c.1287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16760
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys436Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

6-76380353-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380353
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380353
    reference: chr 6
allele count: 1
allele frequency: 8.320159747067144e-6
allele num: 120190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.97C>G
  hgvsp: ENSP00000441715.1:p.Gln33Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1309C>G
  hgvsp: ENSP00000359031.3:p.Gln437Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1309C>G
  hgvsp: ENSP00000402527.2:p.Gln437Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.979C>G
  hgvsp: ENSP00000391426.2:p.Gln327Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1288C>G
  hgvsp: ENSP00000359027.2:p.Gln430Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1288C>G
  hgvsp: ENSP00000321820.8:p.Gln430Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.156C>G
  hgvsp: ENSP00000422576.1:p.Gln53Glu
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln437Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

6-76380355-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380355
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380355
    reference: chr 6
allele count: 1
allele frequency: 8.324731111185109e-6
allele num: 120124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1311A>G
  hgvsp: ENST00000370014.3:c.1311A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1290A>G
  hgvsp: ENST00000370010.2:c.1290A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.99A>G
  hgvsp: ENST00000541192.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1290A>G
  hgvsp: ENST00000327284.8:c.1290A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.158A>G
  hgvsp: ENST00000503501.1:c.158A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.981A>G
  hgvsp: ENST00000424947.2:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1311A>G
  hgvsp: ENST00000447266.2:c.1311A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln437Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-76380360-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380360
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380360
    reference: chr 6
allele count: 68
allele frequency: 5.669217814683274e-4
allele num: 119946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.986C>T
  hgvsp: ENSP00000391426.2:p.Ser329Phe
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1295C>T
  hgvsp: ENSP00000359027.2:p.Ser432Phe
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1295C>T
  hgvsp: ENSP00000321820.8:p.Ser432Phe
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.104C>T
  hgvsp: ENSP00000441715.1:p.Ser35Phe
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1316C>T
  hgvsp: ENSP00000402527.2:p.Ser439Phe
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1316C>T
  hgvsp: ENSP00000359031.3:p.Ser439Phe
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.163C>T
  hgvsp: ENSP00000422576.1:p.Ser55Phe
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16771
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38186
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 9.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 51546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser439Phe
num of homozygotes: 3
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

6-76380361-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380361
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380361
    reference: chr 6
allele count: 1
allele frequency: 8.340840089413805e-6
allele num: 119892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.105C>G
  hgvsp: ENST00000541192.1:c.105C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1296C>G
  hgvsp: ENST00000370010.2:c.1296C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.987C>G
  hgvsp: ENST00000424947.2:c.987C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.164C>G
  hgvsp: ENST00000503501.1:c.164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1317C>G
  hgvsp: ENST00000370014.3:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1317C>G
  hgvsp: ENST00000447266.2:c.1317C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1296C>G
  hgvsp: ENST00000327284.8:c.1296C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16789
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser439Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-76380367-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380367
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380367
    reference: chr 6
allele count: 1
allele frequency: 8.360085607276618e-6
allele num: 119616
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1323C>G
  hgvsp: ENSP00000402527.2:p.Asp441Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1302C>G
  hgvsp: ENSP00000321820.8:p.Asp434Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.993C>G
  hgvsp: ENSP00000391426.2:p.Asp331Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1323C>G
  hgvsp: ENSP00000359031.3:p.Asp441Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1302C>G
  hgvsp: ENSP00000359027.2:p.Asp434Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.170C>G
  hgvsp: ENSP00000422576.1:p.Asp57Glu
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.111C>G
  hgvsp: ENSP00000441715.1:p.Asp37Glu
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp441Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-76380368-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380368
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380368
    reference: chr 6
allele count: 1
allele frequency: 8.362043014349267e-6
allele num: 119588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.112A>G
  hgvsp: ENSP00000441715.1:p.Ser38Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1303A>G
  hgvsp: ENSP00000359027.2:p.Ser435Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1303A>G
  hgvsp: ENSP00000321820.8:p.Ser435Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1324A>G
  hgvsp: ENSP00000359031.3:p.Ser442Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1324A>G
  hgvsp: ENSP00000402527.2:p.Ser442Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.171A>G
  hgvsp: ENSP00000422576.1:p.Ser58Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.994A>G
  hgvsp: ENSP00000391426.2:p.Ser332Gly
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16853
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser442Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

6-76380378-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380378
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380378
    reference: chr 6
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.122T>C
  hgvsp: ENSP00000441715.1:p.Leu41Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1334T>C
  hgvsp: ENSP00000402527.2:p.Leu445Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1313T>C
  hgvsp: ENSP00000321820.8:p.Leu438Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1313T>C
  hgvsp: ENSP00000359027.2:p.Leu438Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1004T>C
  hgvsp: ENSP00000391426.2:p.Leu335Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1334T>C
  hgvsp: ENSP00000359031.3:p.Leu445Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.181T>C
  hgvsp: ENSP00000422576.1:p.Leu61Ser
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu445Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-76380384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380384
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380384
    reference: chr 6
allele count: 1
allele frequency: 8.495743632440147e-6
allele num: 117706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1010G>A
  hgvsp: ENSP00000391426.2:p.Cys337Tyr
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1319G>A
  hgvsp: ENSP00000321820.8:p.Cys440Tyr
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1319G>A
  hgvsp: ENSP00000359027.2:p.Cys440Tyr
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1340G>A
  hgvsp: ENSP00000402527.2:p.Cys447Tyr
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.187G>A
  hgvsp: ENSP00000422576.1:p.Cys63Tyr
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1340G>A
  hgvsp: ENSP00000359031.3:p.Cys447Tyr
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.128G>A
  hgvsp: ENSP00000441715.1:p.Cys43Tyr
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16840
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys447Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

6-76380387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380387
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380387
    reference: chr 6
allele count: 1
allele frequency: 8.563696776624533e-6
allele num: 116772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.190G>A
  hgvsp: ENSP00000422576.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.131G>A
  hgvsp: ENSP00000441715.1:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1013G>A
  hgvsp: ENSP00000391426.2:p.Arg338Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1322G>A
  hgvsp: ENSP00000321820.8:p.Arg441Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1343G>A
  hgvsp: ENSP00000359031.3:p.Arg448Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1322G>A
  hgvsp: ENSP00000359027.2:p.Arg441Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1343G>A
  hgvsp: ENSP00000402527.2:p.Arg448Gln
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg448Gln
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/6-76380389-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380389
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380389
    reference: chr 6
allele count: 1
allele frequency: 8.602002546192754e-6
allele num: 116252
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1345A>C
  hgvsp: ENSP00000402527.2:p.Ser449Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.133A>C
  hgvsp: ENSP00000441715.1:p.Ser45Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.192A>C
  hgvsp: ENSP00000422576.1:p.Ser65Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1015A>C
  hgvsp: ENSP00000391426.2:p.Ser339Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1324A>C
  hgvsp: ENSP00000359027.2:p.Ser442Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1324A>C
  hgvsp: ENSP00000321820.8:p.Ser442Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1345A>C
  hgvsp: ENSP00000359031.3:p.Ser449Arg
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser449Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-76380390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380390
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380390
    reference: chr 6
allele count: 1
allele frequency: 8.60244653579478e-6
allele num: 116246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1346G>A
  hgvsp: ENSP00000359031.3:p.Ser449Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.193G>A
  hgvsp: ENSP00000422576.1:p.Ser65Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.134G>A
  hgvsp: ENSP00000441715.1:p.Ser45Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1016G>A
  hgvsp: ENSP00000391426.2:p.Ser339Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1346G>A
  hgvsp: ENSP00000402527.2:p.Ser449Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1325G>A
  hgvsp: ENSP00000321820.8:p.Ser442Asn
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1325G>A
  hgvsp: ENSP00000359027.2:p.Ser442Asn
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser449Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

6-76380396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380396
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380396
    reference: chr 6
allele count: 1
allele frequency: 8.677542519958348e-6
allele num: 115240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1331G>A
  hgvsp: ENSP00000321820.8:p.Arg444Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.140G>A
  hgvsp: ENSP00000441715.1:p.Arg47Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1352G>A
  hgvsp: ENSP00000359031.3:p.Arg451Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1022G>A
  hgvsp: ENSP00000391426.2:p.Arg341Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1352G>A
  hgvsp: ENSP00000402527.2:p.Arg451Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1331G>A
  hgvsp: ENSP00000359027.2:p.Arg444Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.199G>A
  hgvsp: ENSP00000422576.1:p.Arg67Gln
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33723
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg451Gln
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-76380397-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380397
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380397
    reference: chr 6
allele count: 27
allele frequency: 2.346275504883729e-4
allele num: 115076
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1353A>C
  hgvsp: ENST00000447266.2:c.1353A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.141A>C
  hgvsp: ENST00000541192.1:c.141A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1023A>C
  hgvsp: ENST00000424947.2:c.1023A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1332A>C
  hgvsp: ENST00000327284.8:c.1332A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1353A>C
  hgvsp: ENST00000370014.3:c.1353A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.200A>C
  hgvsp: ENST00000503501.1:c.200A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1332A>C
  hgvsp: ENST00000370010.2:c.1332A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33619
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16249
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg451Arg
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

6-76380398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380398
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380398
    reference: chr 6
allele count: 8
allele frequency: 6.963545837540475e-5
allele num: 114884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1333G>A
  hgvsp: ENSP00000321820.8:p.Val445Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1333G>A
  hgvsp: ENSP00000359027.2:p.Val445Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1024G>A
  hgvsp: ENSP00000391426.2:p.Val342Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1354G>A
  hgvsp: ENSP00000402527.2:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.142G>A
  hgvsp: ENSP00000441715.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.201G>A
  hgvsp: ENSP00000422576.1:p.Val68Ile
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1354G>A
  hgvsp: ENSP00000359031.3:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16187
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33480
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Val452Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-76380406-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380406
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380406
    reference: chr 6
allele count: 3
allele frequency: 2.690679486259597e-5
allele num: 111496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.150A>T
  hgvsp: ENST00000541192.1:c.150A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1362A>T
  hgvsp: ENST00000447266.2:c.1362A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1341A>T
  hgvsp: ENST00000327284.8:c.1341A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1362A>T
  hgvsp: ENST00000370014.3:c.1362A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1341A>T
  hgvsp: ENST00000370010.2:c.1341A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1032A>T
  hgvsp: ENST00000424947.2:c.1032A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.209A>T
  hgvsp: ENST00000503501.1:c.209A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15667
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr454Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

6-76380413-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380413
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380413
    reference: chr 6
allele count: 1
allele frequency: 9.192359310940746e-6
allele num: 108786
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1369C>G
  hgvsp: ENSP00000402527.2:p.Arg457Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1348C>G
  hgvsp: ENSP00000321820.8:p.Arg450Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.157C>G
  hgvsp: ENSP00000441715.1:p.Arg53Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1039C>G
  hgvsp: ENSP00000391426.2:p.Arg347Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1348C>G
  hgvsp: ENSP00000359027.2:p.Arg450Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1369C>G
  hgvsp: ENSP00000359031.3:p.Arg457Gly
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.216C>G
  hgvsp: ENSP00000422576.1:p.Arg73Gly
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg457Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-76380413-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380413
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380413
    reference: chr 6
allele count: 1
allele frequency: 9.192359310940746e-6
allele num: 108786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1039C>T
  hgvsp: ENSP00000391426.2:p.Arg347Trp
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.157C>T
  hgvsp: ENSP00000441715.1:p.Arg53Trp
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1369C>T
  hgvsp: ENSP00000359031.3:p.Arg457Trp
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1348C>T
  hgvsp: ENSP00000359027.2:p.Arg450Trp
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.216C>T
  hgvsp: ENSP00000422576.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1369C>T
  hgvsp: ENSP00000402527.2:p.Arg457Trp
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1348C>T
  hgvsp: ENSP00000321820.8:p.Arg450Trp
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg457Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

6-76380414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380414
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380414
    reference: chr 6
allele count: 3
allele frequency: 2.769060365515968e-5
allele num: 108340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1370G>A
  hgvsp: ENSP00000402527.2:p.Arg457Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1370G>A
  hgvsp: ENSP00000359031.3:p.Arg457Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1349G>A
  hgvsp: ENSP00000359027.2:p.Arg450Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1040G>A
  hgvsp: ENSP00000391426.2:p.Arg347Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.217G>A
  hgvsp: ENSP00000422576.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1349G>A
  hgvsp: ENSP00000321820.8:p.Arg450Gln
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.158G>A
  hgvsp: ENSP00000441715.1:p.Arg53Gln
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28569
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39296
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg457Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-76380422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380422
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380422
    reference: chr 6
allele count: 3
allele frequency: 2.858613000971929e-5
allele num: 104946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.166A>G
  hgvsp: ENSP00000441715.1:p.Ile56Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1378A>G
  hgvsp: ENSP00000402527.2:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1048A>G
  hgvsp: ENSP00000391426.2:p.Ile350Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1357A>G
  hgvsp: ENSP00000321820.8:p.Ile453Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1378A>G
  hgvsp: ENSP00000359031.3:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1357A>G
  hgvsp: ENSP00000359027.2:p.Ile453Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.225A>G
  hgvsp: ENSP00000422576.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13720
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile460Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

6-76380428-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380428
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380428
    reference: chr 6
allele count: 1
allele frequency: 9.803537116191522e-6
allele num: 102004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1384C>T
  hgvsp: ENSP00000359031.3:p.Pro462Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1363C>T
  hgvsp: ENSP00000359027.2:p.Pro455Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1384C>T
  hgvsp: ENSP00000402527.2:p.Pro462Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.231C>T
  hgvsp: ENSP00000422576.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1363C>T
  hgvsp: ENSP00000321820.8:p.Pro455Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.172C>T
  hgvsp: ENSP00000441715.1:p.Pro58Ser
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1054C>T
  hgvsp: ENSP00000391426.2:p.Pro352Ser
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro462Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

6-76380429-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380429
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380429
    reference: chr 6
allele count: 1
allele frequency: 9.854352667573266e-6
allele num: 101478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.232C>G
  hgvsp: ENSP00000422576.1:p.Pro78Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1385C>G
  hgvsp: ENSP00000359031.3:p.Pro462Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1364C>G
  hgvsp: ENSP00000359027.2:p.Pro455Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1385C>G
  hgvsp: ENSP00000402527.2:p.Pro462Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1055C>G
  hgvsp: ENSP00000391426.2:p.Pro352Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.173C>G
  hgvsp: ENSP00000441715.1:p.Pro58Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1364C>G
  hgvsp: ENSP00000321820.8:p.Pro455Arg
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro462Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-76380434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380434
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380434
    reference: chr 6
allele count: 5
allele frequency: 5.056429756077828e-5
allele num: 98884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.178A>G
  hgvsp: ENSP00000441715.1:p.Ile60Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1060A>G
  hgvsp: ENSP00000391426.2:p.Ile354Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1390A>G
  hgvsp: ENSP00000402527.2:p.Ile464Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1369A>G
  hgvsp: ENSP00000359027.2:p.Ile457Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1369A>G
  hgvsp: ENSP00000321820.8:p.Ile457Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1390A>G
  hgvsp: ENSP00000359031.3:p.Ile464Val
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.237A>G
  hgvsp: ENSP00000422576.1:p.Ile80Val
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22336
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile464Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

6-76380443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380443
    reference: chr 6
allele count: 1
allele frequency: 1.079121163724263e-5
allele num: 92668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+7A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+7A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+7A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+7A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+7A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+7A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+7A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10106
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1392+7A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-76380445-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380445
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380445
    reference: chr 6
allele count: 5
allele frequency: 5.482937099745591e-5
allele num: 91192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+9A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+9A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+9A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+9A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+9A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+9A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+9A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15126
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

6-76380457-TTACTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380457
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380452
    reference: chr 6
allele count: 1
allele frequency: 1.219244556073057e-5
allele num: 82018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+25_1392+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+25_1371+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+25_1371+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+25_239+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+25_1392+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+25_180+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+25_1062+29delTATAC
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: TTACTA
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

6-76380461-T-TAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380461
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380464
    reference: chr 6
allele count: 1
allele frequency: 1.308044473512099e-5
allele num: 76450
alternate allele: TAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+26_1371+27insAAA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+26_180+27insAAA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+26_1392+27insAAA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+26_1062+27insAAA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+26_1371+27insAAA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+26_1392+27insAAA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+26_239+27insAAA
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

6-76380464-A-AAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380464
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380467
    reference: chr 6
allele count: 1
allele frequency: 1.342930812204555e-5
allele num: 74464
alternate allele: AAGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+28_1062+29insAGG
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+28_239+29insAGG
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+28_1371+29insAGG
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+28_1392+29insAGG
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+28_1371+29insAGG
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+28_1392+29insAGG
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+28_180+29insAGG
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-76380468-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380468
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380468
    reference: chr 6
allele count: 186
allele frequency: 2.640845070422535e-3
allele num: 70432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+32A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+32A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+32A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+32A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+32A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+32A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+32A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 1.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 1.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18069
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 9.75e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 6.25e1
  variant carriers: 5
num of homozygotes: 3
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

6-76380471-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380471
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380471
    reference: chr 6
allele count: 1
allele frequency: 1.462458685542133e-5
allele num: 68378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+35A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+35A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+35A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+35A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+35A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+35A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+35A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23157
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

6-76380476-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380476
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380476
    reference: chr 6
allele count: 1
allele frequency: 1.539124545958259e-5
allele num: 64972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+40A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+40A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+40A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+40A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+40A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+40A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+40A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

6-76380480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380480
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380480
    reference: chr 6
allele count: 1
allele frequency: 1.674873547047198e-5
allele num: 59706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+44A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+44A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+44A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+44A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+44A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+44A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+44A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21437
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-76380486-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380486
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380486
    reference: chr 6
allele count: 1
allele frequency: 2.097491400285259e-5
allele num: 47676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+50C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+50C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+50C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+50C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+50C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+50C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+50C>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14911
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

6-76380487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380487
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380487
    reference: chr 6
allele count: 2
allele frequency: 4.473272198613286e-5
allele num: 44710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+51C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+51C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+51C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+51C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+51C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+51C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+51C>T
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26246
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 143
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genotype quality: GenotypeQuality
  all individuals: 14654
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genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8289
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

6-76380488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76380488
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76380488
    reference: chr 6
allele count: 2
allele frequency: 4.721658246376127e-5
allele num: 42358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1371+52G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1392+52G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1062+52G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1392+52G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.180+52G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.239+52G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1371+52G>A
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26633
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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genotype depth: GenotypeDepth
  all individuals: 14103
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 63
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genotype quality: GenotypeQuality
  all individuals: 14294
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 403
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7667
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-76385100-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385100
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385100
    reference: chr 6
allele count: 1
allele frequency: 9.210986865132731e-6
allele num: 108566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-51C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-51C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-51C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-51C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-51C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-51C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-51C>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10042
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-76385101-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385101
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385101
    reference: chr 6
allele count: 1
allele frequency: 9.203187984317769e-6
allele num: 108658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-50C>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-50C>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-50C>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-50C>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-50C>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-50C>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-50C>A
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5117
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-76385113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385113
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385113
    reference: chr 6
allele count: 1
allele frequency: 9.177679882525697e-6
allele num: 108960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-38G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-38G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-38G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-38G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-38G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-38G>A
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-38G>A
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

6-76385121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385121
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385121
    reference: chr 6
allele count: 1
allele frequency: 9.135089706580919e-6
allele num: 109468
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-30A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-30A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-30A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-30A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-30A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-30A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-30A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

6-76385134-TTCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385131
    reference: chr 6
allele count: 1
allele frequency: 9.00835975785529e-6
allele num: 111008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-14_240-12delATC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-14_1372-12delATC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-14_181-12delATC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-14_1063-12delATC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-14_1393-12delATC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-14_1372-12delATC
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-14_1393-12delATC
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: TTCA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP

6-76385137-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385137
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385137
    reference: chr 6
allele count: 1
allele frequency: 8.976016085020824e-6
allele num: 111408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-14A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-14A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-14A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-14A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-14A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-14A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-14A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

6-76385139-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385139
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385140
    reference: chr 6
allele count: 155
allele frequency: 1.500338786177524e-3
allele num: 103310
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-3dupT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-3dupT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-3dupT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-3dupT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-3dupT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-3dupT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-3dupT
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17038
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 2.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 1.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 2.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 12
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-76385139-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385139
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385138
    reference: chr 6
allele count: 128
allele frequency: 1.238989449230471e-3
allele num: 103310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-3delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-3delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-3delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-3delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-3delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-3delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-3delT
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11885
  bin: 2.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 17038
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7352
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 2.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 2.5e0
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 22
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: CT
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

6-76385144-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385144
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385144
    reference: chr 6
allele count: 1
allele frequency: 8.832829862031198e-6
allele num: 113214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-7T>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-7T>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-7T>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-7T>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-7T>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-7T>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-7T>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1393-7T>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-76385148-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385148
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385149
    reference: chr 6
allele count: 1
allele frequency: 8.822543362800628e-6
allele num: 113346
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1063-2dupA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1372-2dupA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.240-2dupA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1393-2dupA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1372-2dupA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.181-2dupA
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1393-2dupA
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1393-2dupA
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-76385154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385154
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385154
    reference: chr 6
allele count: 2
allele frequency: 1.755587156124366e-5
allele num: 113922
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1396T>C
  hgvsp: ENSP00000402527.2:p.Cys466Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1066T>C
  hgvsp: ENSP00000391426.2:p.Cys356Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1375T>C
  hgvsp: ENSP00000321820.8:p.Cys459Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.184T>C
  hgvsp: ENSP00000441715.1:p.Cys62Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1396T>C
  hgvsp: ENSP00000359031.3:p.Cys466Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1375T>C
  hgvsp: ENSP00000359027.2:p.Cys459Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.243T>C
  hgvsp: ENSP00000422576.1:p.Cys82Arg
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7563
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys466Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

6-76385164-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385164
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385164
    reference: chr 6
allele count: 1
allele frequency: 8.731031833342064e-6
allele num: 114534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1076T>G
  hgvsp: ENSP00000391426.2:p.Phe359Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.253T>G
  hgvsp: ENSP00000422576.1:p.Phe85Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1406T>G
  hgvsp: ENSP00000402527.2:p.Phe469Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1385T>G
  hgvsp: ENSP00000359027.2:p.Phe462Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.194T>G
  hgvsp: ENSP00000441715.1:p.Phe65Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1385T>G
  hgvsp: ENSP00000321820.8:p.Phe462Cys
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1406T>G
  hgvsp: ENSP00000359031.3:p.Phe469Cys
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe469Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

6-76385170-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385170
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385170
    reference: chr 6
allele count: 34
allele frequency: 2.961878876576765e-4
allele num: 114792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1082A>G
  hgvsp: ENSP00000391426.2:p.Lys361Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.200A>G
  hgvsp: ENSP00000441715.1:p.Lys67Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1412A>G
  hgvsp: ENSP00000359031.3:p.Lys471Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1412A>G
  hgvsp: ENSP00000402527.2:p.Lys471Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1391A>G
  hgvsp: ENSP00000321820.8:p.Lys464Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1391A>G
  hgvsp: ENSP00000359027.2:p.Lys464Arg
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.259A>G
  hgvsp: ENSP00000422576.1:p.Lys87Arg
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20872
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15070
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6836
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys471Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-76385174-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385174
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385174
    reference: chr 6
allele count: 5
allele frequency: 4.34941456879904e-5
allele num: 114958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1395A>G
  hgvsp: ENSP00000321820.8:p.Ile465Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1395A>G
  hgvsp: ENSP00000359027.2:p.Ile465Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1416A>G
  hgvsp: ENSP00000359031.3:p.Ile472Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.204A>G
  hgvsp: ENSP00000441715.1:p.Ile68Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1086A>G
  hgvsp: ENSP00000391426.2:p.Ile362Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1416A>G
  hgvsp: ENSP00000402527.2:p.Ile472Met
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.263A>G
  hgvsp: ENSP00000422576.1:p.Ile88Met
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15086
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7563
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile472Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-76385177-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385177
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385177
    reference: chr 6
allele count: 1
allele frequency: 8.692477529945585e-6
allele num: 115042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.266G>T
  hgvsp: ENSP00000422576.1:p.Gln89His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1089G>T
  hgvsp: ENSP00000391426.2:p.Gln363His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1398G>T
  hgvsp: ENSP00000359027.2:p.Gln466His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1398G>T
  hgvsp: ENSP00000321820.8:p.Gln466His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.207G>T
  hgvsp: ENSP00000441715.1:p.Gln69His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1419G>T
  hgvsp: ENSP00000402527.2:p.Gln473His
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1419G>T
  hgvsp: ENSP00000359031.3:p.Gln473His
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7559
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln473His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

6-76385178-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385178
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385177
    reference: chr 6
allele count: 1
allele frequency: 8.692175303791527e-6
allele num: 115046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1400delT
  hgvsp: ENSP00000321820.8:p.Leu467GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1400delT
  hgvsp: ENSP00000359027.2:p.Leu467GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1091delT
  hgvsp: ENSP00000391426.2:p.Leu364GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1421delT
  hgvsp: ENSP00000402527.2:p.Leu474GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.268delT
  hgvsp: ENSP00000422576.1:p.Leu90GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.209delT
  hgvsp: ENSP00000441715.1:p.Leu70GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1421delT
  hgvsp: ENSP00000359031.3:p.Leu474GlnfsTer9
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6852
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu474GlnfsTer9
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: CT
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-76385183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385183
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385183
    reference: chr 6
allele count: 4
allele frequency: 3.475057772835474e-5
allele num: 115106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.213C>T
  hgvsp: ENST00000541192.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1425C>T
  hgvsp: ENST00000370014.3:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1404C>T
  hgvsp: ENST00000370010.2:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1425C>T
  hgvsp: ENST00000447266.2:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.272C>T
  hgvsp: ENST00000503501.1:c.272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1095C>T
  hgvsp: ENST00000424947.2:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1404C>T
  hgvsp: ENST00000327284.8:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1425C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

6-76385190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385190
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385190
    reference: chr 6
allele count: 1
allele frequency: 8.691419830343484e-6
allele num: 115056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1405+6C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1405+6C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1426+6C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.214+6C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1096+6C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1426+6C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.273+6C>T
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7557
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1426+6C>T
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

6-76385192-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385192
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385192
    reference: chr 6
allele count: 2
allele frequency: 1.738465282848302e-5
allele num: 115044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1405+8A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.214+8A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1405+8A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1096+8A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1426+8A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.273+8A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1426+8A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30574
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1426+8A>G
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

6-76385197-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385197
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385196
    reference: chr 6
allele count: 2
allele frequency: 1.739675028704638e-5
allele num: 114964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1405+14delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.214+14delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1096+14delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1405+14delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1426+14delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.273+14delT
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1426+14delT
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7556
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

6-76385218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385218
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385218
    reference: chr 6
allele count: 4
allele frequency: 3.497604141163303e-5
allele num: 114364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1426+34C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1096+34C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.273+34C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1405+34C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1405+34C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.214+34C>T
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1426+34C>T
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7560
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5920
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

6-76385223-T-TTATATTACTCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385223
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385234
    reference: chr 6
allele count: 1
allele frequency: 8.755494072530513e-6
allele num: 114214
alternate allele: TTATATTACTCG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

6-76385230-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385230
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385230
    reference: chr 6
allele count: 21
allele frequency: 1.857848081108339e-4
allele num: 113034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1426+46C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1096+46C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1405+46C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1426+46C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1405+46C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.273+46C>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.214+46C>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7571
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

6-76385231-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76385231
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 76385231
    reference: chr 6
allele count: 18
allele frequency: 1.59458549635903e-4
allele num: 112882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000441715
  ensembl transcript: ENST00000541192
  gene symbol: SENP6
  hgvsc: ENST00000541192.1:c.214+47A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000391426
  ensembl transcript: ENST00000424947
  gene symbol: SENP6
  hgvsc: ENST00000424947.2:c.1096+47A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359027
  ensembl transcript: ENST00000370010
  gene symbol: SENP6
  hgvsc: ENST00000370010.2:c.1405+47A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000359031
  ensembl transcript: ENST00000370014
  gene symbol: SENP6
  hgvsc: ENST00000370014.3:c.1426+47A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000402527
  ensembl transcript: ENST00000447266
  gene symbol: SENP6
  hgvsc: ENST00000447266.2:c.1426+47A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000321820
  ensembl transcript: ENST00000327284
  gene symbol: SENP6
  hgvsc: ENST00000327284.8:c.1405+47A>G
  variant of: http://identifiers.org/hgnc/20944
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112701
  ensembl protein: ENSP00000422576
  ensembl transcript: ENST00000503501
  gene symbol: SENP6
  hgvsc: ENST00000503501.1:c.273+47A>G
  variant of: http://identifiers.org/hgnc/20944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.466637e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.462e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.394e0

QD
type: SiteQuality
SIO_000300: 1.45e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 7.577e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.422e0

GenotypeQuality
all individuals: 4543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

FS
type: SiteQuality
SIO_000300: 7.208e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 1.468166e6

MQRankSum
type: SiteQuality
SIO_000300: -1.048e0

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4556
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.09e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 1.469028e6

VQSLOD
type: SiteQuality
SIO_000300: -1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

QD
type: SiteQuality
SIO_000300: 6.68e0

GenotypeQuality
all individuals: 4574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.828e1

VQSLOD
type: SiteQuality
SIO_000300: -2.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.784e0

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 2.509e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.371e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.470568e6

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023960679909891e-4
allele num: 9766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

DP
type: SiteQuality
SIO_000300: 1.470738e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 6.75e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.028e0

FS
type: SiteQuality
SIO_000300: 9.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeQuality
all individuals: 149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52487
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

DP
type: SiteQuality
SIO_000300: 1.471191e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52487
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.471229e6

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

FS
type: SiteQuality
SIO_000300: 5.796e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.24e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.471612e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

QD
type: SiteQuality
SIO_000300: 1.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 9.75e1
variant carriers: 18

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.090909090909091e-3
allele num: 16500
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.472685e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeQuality
all individuals: 4575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.25e1
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GenotypeQuality
all individuals: 52402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.046245140167792e-4
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0359e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e0

DP
type: SiteQuality
SIO_000300: 1.471498e6

VQSLOD
type: SiteQuality
SIO_000300: -4.846e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.470519e6

QD
type: SiteQuality
SIO_000300: 1.326e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 9.75e1
variant carriers: 32

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.807981248873129e-4
allele num: 66556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.471175e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.488e0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

QD
type: SiteQuality
SIO_000300: 1.237e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52085
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
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variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.838e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.46909e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

FS
type: SiteQuality
SIO_000300: 1.582e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.102564102564102e-4
allele num: 9750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.975e0

DP
type: SiteQuality
SIO_000300: 1.468372e6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.431e1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 1.559e0

DP
type: SiteQuality
SIO_000300: 1.467975e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.896e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.302e0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 51846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
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variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4533
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027115858668858e-4
allele num: 9736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.466795e6

FS
type: SiteQuality
SIO_000300: 9.619e0

QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: -5.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
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GenotypeQuality
all individuals: 78
bin: 3.75e1
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GenotypeQuality
all individuals: 892
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GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4499
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 66
allele frequency: 4.021937842778794e-3
allele num: 16410
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017501508750754e-5
allele num: 66280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.21e-2

DP
type: SiteQuality
SIO_000300: 1.467579e6

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.141e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
all individuals: 776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 102
bin: 8.75e1
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GenotypeQuality
all individuals: 4504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 294
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GenotypeQuality
all individuals: 801
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509297271190534e-5
allele num: 66256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 2.239e0

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 1.464838e6

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.064e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.46152e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66044
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
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allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
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SIO_000300: 1.267e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.46061e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 8.599999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530268715186387e-5
allele num: 65348
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e-1

FS
type: SiteQuality
SIO_000300: 9.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.448156e6

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e0

QD
type: SiteQuality
SIO_000300: 1.398e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.049317943336831e-4
allele num: 9530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 9.34e0

VQSLOD
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 1.438247e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557001837262168e-5
allele num: 64226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.317e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

DP
type: SiteQuality
SIO_000300: 1.428517e6

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565239168544954e-5
allele num: 63888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.420225e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565337173627199e-5
allele num: 63884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.981e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.582078217947095e-5
allele num: 63208
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6446
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8334
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 2.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
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European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 4.120966208077094e-4
allele num: 63092
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.224712107065049e-4
allele num: 6426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.353240152477763e-5
allele num: 62960
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.625e0

QD
type: SiteQuality
SIO_000300: 1.402e1

DP
type: SiteQuality
SIO_000300: 1.402396e6

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 552
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 628
bin: 7.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.937946472660236e-5
allele num: 60754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.359276e6

QD
type: SiteQuality
SIO_000300: 1.514e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.397e0

VQSLOD
type: SiteQuality
SIO_000300: -3.983e-1

GenotypeQuality
all individuals: 824
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9643
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variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.694915254237288e-5
allele num: 59000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.32596e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 8.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

GenotypeQuality
all individuals: 710
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 685
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 586
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.518055012384304e-5
allele num: 15342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59000
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.32596e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

QD
type: SiteQuality
SIO_000300: 8.56e0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.7e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 720
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
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variant carriers: 0

GenotypeQuality
all individuals: 583
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 836
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 239
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GenotypeQuality
all individuals: 9993
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GenotypeQuality
all individuals: 667
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variant carriers: 0

GenotypeQuality
all individuals: 1065
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GenotypeQuality
all individuals: 3503
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.407735559720566e-5
allele num: 58690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 4.49e0

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

DP
type: SiteQuality
SIO_000300: 1.319849e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 522
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GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 899
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GenotypeQuality
all individuals: 895
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 544
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variant carriers: 0

GenotypeQuality
all individuals: 3296
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variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.304664568377126e-5
allele num: 56554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.182e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 1.502e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.268897e6

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 837
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 479
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 787
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variant carriers: 1

GenotypeQuality
all individuals: 548
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.824617742582929e-5
allele num: 54806
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.539e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.229834e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.998e1

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 381
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GenotypeQuality
all individuals: 1075
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 619
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GenotypeQuality
all individuals: 786
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 117
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.836817163219573e-5
allele num: 54442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.232e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.222802e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.796e0

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

FS
type: SiteQuality
SIO_000300: 8.279999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.2e0

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 389
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GenotypeQuality
all individuals: 2745
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GenotypeQuality
all individuals: 440
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GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 1183
bin: 2.75e1
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GenotypeQuality
all individuals: 788
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 4
allele frequency: 5.433306166802499e-4
allele num: 7362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.892147587511826e-5
allele num: 52850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 1.264e1

FS
type: SiteQuality
SIO_000300: 7.25e-1

DP
type: SiteQuality
SIO_000300: 1.182362e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 1588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 25478
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GenotypeQuality
all individuals: 415
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GenotypeQuality
all individuals: 394
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GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.034505208333333e-5
allele num: 49152
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13836
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

FS
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SIO_000300: 3.736e0

BaseQRankSum
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SIO_000300: 4.26e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.083724e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6766
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Other
type: Population
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allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48330
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.65978626848192e-4
allele num: 13662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
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SIO_000300: 1.057303e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.8e-3

MQRankSum
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SIO_000300: 6.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6030
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12774
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5046
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.32709671413944e-5
allele num: 42972
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQ
type: SiteQuality
SIO_000300: 4.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 9.43e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4814
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.465845793022574e-4
allele num: 6822
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5582
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

QD
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 7.96625e5

MQ
type: SiteQuality
SIO_000300: 3.732e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 125
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.401e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQ
type: SiteQuality
SIO_000300: 3.732e1

VQSLOD
type: SiteQuality
SIO_000300: -1.092e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

DP
type: SiteQuality
SIO_000300: 7.7514e5

QD
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 696
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variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.629195177582274e-4
allele num: 6138
num of homozygotes: 0

East Asian
type: Population
allele count: 181
allele frequency: 3.554595443833464e-2
allele num: 5092
num of homozygotes: 3

South Asian
type: Population
allele count: 2
allele frequency: 1.710571330824495e-4
allele num: 11692
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.661129568106312e-3
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.578282828282828e-4
allele num: 6336
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.35422e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.47e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 243
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.865001146000458e-5
allele num: 34904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.667e1

BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 7.19245e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.958967926894822e-5
allele num: 11162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.90631e5

VQSLOD
type: SiteQuality
SIO_000300: 9.84e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 500
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.34179922470258e-5
allele num: 29924
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.260758414997869e-5
allele num: 23470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1833
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.570801718621446e-5
allele num: 21878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3312
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.122082585278277e-4
allele num: 8912
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.252e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.32e-2

DP
type: SiteQuality
SIO_000300: 6.22272e5

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

GenotypeQuality
all individuals: 2664
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3449
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.147052076164258e-4
allele num: 8718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.946329913180742e-4
allele num: 2534
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 6.18618e5

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

QD
type: SiteQuality
SIO_000300: 7.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8320
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
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variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.688618709895306e-5
allele num: 59220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 1.736478e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
all individuals: 8316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
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variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.687365010799136e-5
allele num: 59264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 1.738207e6

MQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.576e1

GenotypeQuality
all individuals: 679
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 977
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variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682538614261197e-5
allele num: 59434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

DP
type: SiteQuality
SIO_000300: 1.777162e6

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.284e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
all individuals: 1226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20793
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variant carriers: 0

GenotypeQuality
all individuals: 8319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10696
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.353240152477763e-5
allele num: 15740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 4.523e0

QD
type: SiteQuality
SIO_000300: 1.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: -1.049e0

DP
type: SiteQuality
SIO_000300: 1.810705e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.859e0

GenotypeQuality
all individuals: 1245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 9.25e1
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GenotypeQuality
all individuals: 2928
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.641766540797899e-5
allele num: 60910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.759e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 1.764e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.732e0

DP
type: SiteQuality
SIO_000300: 1.858386e6

GenotypeQuality
all individuals: 1337
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 5987
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GenotypeQuality
all individuals: 373
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63446765388513e-5
allele num: 61182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.86951e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 1937
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7352
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 2684
bin: 2.5e0
variant carriers: 20

GenotypeQuality
all individuals: 1272
bin: 4.25e1
variant carriers: 6

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 1684
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 990
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1321
bin: 4.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 63
allele frequency: 1.118052104777454e-3
allele num: 56348
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.8860103626943e-3
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.301991429291656e-4
allele num: 7934
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.622460496613995e-3
allele num: 14176
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.190948789202064e-3
allele num: 10076
num of homozygotes: 0

African
type: Population
allele count: 49
allele frequency: 6.00637411130179e-3
allele num: 8158
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

FS
type: SiteQuality
SIO_000300: 6.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

QD
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

DP
type: SiteQuality
SIO_000300: 1.983341e6

GenotypeQuality
all individuals: 1222
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1321
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 930
bin: 1.25e1
variant carriers: 32

GenotypeQuality
all individuals: 782
bin: 8.75e1
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GenotypeQuality
all individuals: 1684
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GenotypeQuality
all individuals: 919
bin: 1.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1799
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 4753
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19711
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1937
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 75
allele frequency: 1.33101441044935e-3
allele num: 56348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.842285323297981e-4
allele num: 5846
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 2.045711060948081e-3
allele num: 14176
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.091703056768559e-3
allele num: 10076
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.128953174797745e-4
allele num: 8158
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.041593143433325e-4
allele num: 7934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.983341e6

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 2.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 600
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15918
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.602718210084303e-5
allele num: 62394
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.75e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.077e0

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.915886e6

FS
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.196172248803828e-3
allele num: 836
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.211e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.14e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.921507e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62926
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.254075746175069e-4
allele num: 15948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.45e-1

DP
type: SiteQuality
SIO_000300: 1.931478e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 616
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.259389083625437e-5
allele num: 15976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63364
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.594e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.942677e6

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.808645324651836e-4
allele num: 11058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 5.035246727089627e-4
allele num: 63552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

DP
type: SiteQuality
SIO_000300: 1.947275e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.855459544383346e-5
allele num: 63650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 6.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.949778e6

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
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Latino
type: Population
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.569513764635716e-5
allele num: 63714
num of homozygotes: 0

East Asian
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allele num: 8472
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.969e-1

DP
type: SiteQuality
SIO_000300: 1.950278e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

Latino
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15940
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63730
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180358829084042e-4
allele num: 8472
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Other
type: Population
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allele num: 844
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.028e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
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QD
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MQ
type: SiteQuality
SIO_000300: 6.037e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.274116133889639e-5
allele num: 63754
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.827e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 6.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.603e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.949522e6

FS
type: SiteQuality
SIO_000300: 1.8724e1

GenotypeQuality
all individuals: 3825
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30716
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568578240682645e-5
allele num: 63752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.088e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 6.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.545e-1

DP
type: SiteQuality
SIO_000300: 1.944779e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7557
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6803
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.801477211313277e-4
allele num: 11102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

DP
type: SiteQuality
SIO_000300: 1.942308e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

QD
type: SiteQuality
SIO_000300: 1.217e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.472e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.747e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6530
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.139520281301017e-5
allele num: 63704
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 4.541e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.932617e6

MQ
type: SiteQuality
SIO_000300: 6.102e1

QD
type: SiteQuality
SIO_000300: 1.573e1

GenotypeQuality
all individuals: 1683
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63444
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.730368968779565e-4
allele num: 8456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

FS
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

DP
type: SiteQuality
SIO_000300: 1.87119e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.492e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.069e0

QD
type: SiteQuality
SIO_000300: 1.2e1

GenotypeQuality
all individuals: 244
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7556
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21223
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57848213158227e-5
allele num: 63352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 1.850966e6

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 4.865e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
all individuals: 2445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
all individuals: 15308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
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variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.870996554804134e-4
allele num: 62696
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.822489520685256e-4
allele num: 10974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.089e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.456e0

DP
type: SiteQuality
SIO_000300: 1.824739e6

QD
type: SiteQuality
SIO_000300: 1.506e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3