5-140237634-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237634
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237634
    reference: chr 5
allele count: 1
allele frequency: 8.644835575227359e-6
allele num: 115676
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60697G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33922G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54458G>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27564G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28356G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48477G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2001G>T
  hgvsp: ENST00000307360.5:c.2001G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+402G>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33922G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48477G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14334G>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21311G>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70157G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69365G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7160G>T
  variant of: http://identifiers.org/hgnc/8675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser667Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-140237642-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237642
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237642
    reference: chr 5
allele count: 2
allele frequency: 1.725059945833118e-5
allele num: 115938
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60705A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69373A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33930A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33930A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2009A>G
  hgvsp: ENSP00000304234.5:p.Glu670Gly
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70165A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48485A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28364A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27572A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21319A>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48485A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7168A>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+410A>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54466A>G
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14342A>G
  variant of: http://identifiers.org/hgnc/8674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu670Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

5-140237644-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237644
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237644
    reference: chr 5
allele count: 71
allele frequency: 6.119845538546407e-4
allele num: 116016
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60707G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14344G>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21321G>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69375G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48487G>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70167G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+412G>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28366G>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2011G>C
  hgvsp: ENSP00000304234.5:p.Gly671Arg
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27574G>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33932G>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7170G>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54468G>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48487G>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33932G>C
  variant of: http://identifiers.org/hgnc/8671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26224
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19695
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
hgvs: p.Gly671Arg
num of homozygotes: 6
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

5-140237645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237645
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237645
    reference: chr 5
allele count: 136
allele frequency: 1.171908660060319e-3
allele num: 116050
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54469G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21322G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60708G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33933G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27575G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69376G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48488G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+413G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33933G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14345G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28367G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2012G>A
  hgvsp: ENSP00000304234.5:p.Gly671Asp
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7171G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48488G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70168G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19724
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26229
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
hgvs: p.Gly671Asp
num of homozygotes: 4
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

5-140237650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237650
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237650
    reference: chr 5
allele count: 190
allele frequency: 1.633902619403883e-3
allele num: 116286
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48493C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14350C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2017C>T
  hgvsp: ENSP00000304234.5:p.Gln673Ter
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33938C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69381C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48493C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70173C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33938C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+418C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28372C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54474C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7176C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21327C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60713C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27580C>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 20158
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26455
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
hgvs: p.Gln673Ter
num of homozygotes: 9
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-140237656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237656
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237656
    reference: chr 5
allele count: 1
allele frequency: 8.584427847883938e-6
allele num: 116490
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60719C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+424C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70179C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48499C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21333C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7182C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27586C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33944C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14356C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33944C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48499C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2023C>T
  hgvsp: ENSP00000304234.5:p.Pro675Ser
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54480C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28378C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69387C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro675Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-140237659-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237659
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237659
    reference: chr 5
allele count: 1
allele frequency: 8.570155291213876e-6
allele num: 116684
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27589A>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60722A>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33947A>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48502A>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69390A>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54483A>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7185A>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33947A>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2026A>C
  hgvsp: ENSP00000304234.5:p.Lys676Gln
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70182A>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+427A>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48502A>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28381A>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21336A>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14359A>C
  variant of: http://identifiers.org/hgnc/8674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys676Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

5-140237659-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237659
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237659
    reference: chr 5
allele count: 1
allele frequency: 8.570155291213876e-6
allele num: 116684
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48502A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33947A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48502A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70182A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+427A>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69390A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27589A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60722A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21336A>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54483A>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7185A>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28381A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14359A>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2026A>T
  hgvsp: ENSP00000304234.5:p.Lys676Ter
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33947A>T
  variant of: http://identifiers.org/hgnc/8671
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys676Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-140237663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237663
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237663
    reference: chr 5
allele count: 1
allele frequency: 8.559738414394057e-6
allele num: 116826
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14363C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2030C>T
  hgvsp: ENSP00000304234.5:p.Ala677Val
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28385C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33951C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27593C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21340C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48506C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+431C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60726C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70186C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33951C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7189C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69394C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48506C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54487C>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala677Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

5-140237666-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237666
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237666
    reference: chr 5
allele count: 1
allele frequency: 8.553880895762407e-6
allele num: 116906
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2033C>G
  hgvsp: ENSP00000304234.5:p.Ser678Trp
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69397C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48509C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33954C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33954C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14366C>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48509C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7192C>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+434C>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27596C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60729C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70189C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28388C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21343C>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54490C>G
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser678Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-140237669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237669
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237669
    reference: chr 5
allele count: 1
allele frequency: 8.534316486592589e-6
allele num: 117174
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60732C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21346C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48512C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27599C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2036C>T
  hgvsp: ENSP00000304234.5:p.Ser679Leu
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+437C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70192C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48512C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33957C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33957C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7195C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54493C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69400C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14369C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28391C>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser679Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-140237670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237670
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237670
    reference: chr 5
allele count: 1
allele frequency: 8.532132009146445e-6
allele num: 117204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28392G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69401G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7196G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54494G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48513G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33958G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14370G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21347G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48513G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+438G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33958G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2037G>A
  hgvsp: ENST00000307360.5:c.2037G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60733G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27600G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70193G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser679Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

5-140237672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237672
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237672
    reference: chr 5
allele count: 2
allele frequency: 1.705815123756887e-5
allele num: 117246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7198G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14372G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33960G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54496G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+440G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48515G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27602G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69403G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33960G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21349G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2039G>A
  hgvsp: ENSP00000304234.5:p.Arg680Gln
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60735G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70195G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48515G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28394G>A
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg680Gln
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

5-140237685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237685
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237685
    reference: chr 5
allele count: 11
allele frequency: 9.337543716681946e-5
allele num: 117804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+453C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2052C>T
  hgvsp: ENST00000307360.5:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60748C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21362C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28407C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48528C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33973C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14385C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48528C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33973C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27615C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70208C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69416C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7211C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54509C>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21541
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly684Gly
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

5-140237686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237686
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237686
    reference: chr 5
allele count: 1
allele frequency: 8.481908090043937e-6
allele num: 117898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28408G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+454G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2053G>A
  hgvsp: ENSP00000304234.5:p.Val685Met
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7212G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70209G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33974G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69417G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14386G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21363G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48529G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27616G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33974G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48529G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60749G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54510G>A
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val685Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-140237690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237690
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237690
    reference: chr 5
allele count: 1
allele frequency: 8.479175145841813e-6
allele num: 117936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28412C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14390C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+458C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33978C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70213C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33978C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48533C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69421C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2057C>T
  hgvsp: ENSP00000304234.5:p.Ala686Val
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60753C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21367C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7216C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54514C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48533C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27620C>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala686Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

5-140237693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237693
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237693
    reference: chr 5
allele count: 1
allele frequency: 8.468260957929679e-6
allele num: 118088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28415C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+461C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70216C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48536C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60756C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14393C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21370C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48536C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33981C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2060C>T
  hgvsp: ENSP00000304234.5:p.Pro687Leu
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27623C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69424C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33981C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7219C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54517C>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro687Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

5-140237694-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237694
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237694
    reference: chr 5
allele count: 1
allele frequency: 8.469408496510604e-6
allele num: 118072
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27624C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60757C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48537C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70217C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+462C>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21371C>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33982C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48537C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33982C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2061C>G
  hgvsp: ENST00000307360.5:c.2061C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7220C>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69425C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28416C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14394C>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54518C>G
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro687Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

5-140237695-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237695
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237695
    reference: chr 5
allele count: 2
allele frequency: 1.691904238220117e-5
allele num: 118210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28417G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48538G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70218G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69426G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21372G>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48538G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54519G>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2062G>T
  hgvsp: ENSP00000304234.5:p.Glu688Ter
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27625G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14395G>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33983G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60758G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7221G>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33983G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+463G>T
  variant of: http://identifiers.org/hgnc/8664
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu688Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-140237701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237701
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237701
    reference: chr 5
allele count: 4
allele frequency: 3.377180392090643e-5
allele num: 118442
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27631G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70224G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28423G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48544G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+469G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69432G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48544G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14401G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2068G>A
  hgvsp: ENSP00000304234.5:p.Ala690Thr
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60764G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33989G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7227G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21378G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54525G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33989G>A
  variant of: http://identifiers.org/hgnc/8671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala690Thr
num of homozygotes: 1
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

5-140237705-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237705
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237705
    reference: chr 5
allele count: 2
allele frequency: 1.686824216048446e-5
allele num: 118566
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48548T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14405T>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+473T>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2072T>C
  hgvsp: ENSP00000304234.5:p.Leu691Pro
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28427T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69436T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70228T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48548T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33993T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60768T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33993T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7231T>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54529T>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27635T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21382T>C
  variant of: http://identifiers.org/hgnc/8673
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu691Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

5-140237706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237706
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237706
    reference: chr 5
allele count: 2
allele frequency: 1.686511282760482e-5
allele num: 118588
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2073G>A
  hgvsp: ENST00000307360.5:c.2073G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+33994G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48549G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60769G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27636G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+474G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+33994G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21383G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28428G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70229G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7232G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48549G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54530G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14406G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69437G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu691Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140237712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237712
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237712
    reference: chr 5
allele count: 4
allele frequency: 3.36898846121452e-5
allele num: 118730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34000T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2079T>C
  hgvsp: ENST00000307360.5:c.2079T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60775T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28434T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+480T>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21389T>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48555T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34000T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7238T>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14412T>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70235T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48555T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69443T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27642T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54536T>C
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp693Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

5-140237713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237713
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237713
    reference: chr 5
allele count: 3
allele frequency: 2.526698783815652e-5
allele num: 118732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28435G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34001G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48556G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21390G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70236G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2080G>A
  hgvsp: ENSP00000304234.5:p.Val694Ile
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+481G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34001G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60776G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48556G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14413G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7239G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69444G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27643G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54537G>A
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val694Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

5-140237717-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237717
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237717
    reference: chr 5
allele count: 2
allele frequency: 1.683955274147919e-5
allele num: 118768
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54541A>G
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27647A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14417A>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60780A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2084A>G
  hgvsp: ENSP00000304234.5:p.Asn695Ser
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69448A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48560A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34005A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7243A>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34005A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+485A>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21394A>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48560A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70240A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28439A>G
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn695Ser
num of homozygotes: 1
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

5-140237723-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237723
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237723
    reference: chr 5
allele count: 6
allele frequency: 5.047700772298218e-5
allele num: 118866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70246A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69454A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34011A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48566A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34011A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2090A>T
  hgvsp: ENSP00000304234.5:p.Tyr697Phe
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+491A>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21400A>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7249A>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27653A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60786A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14423A>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28445A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48566A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54547A>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr697Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140237727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237727
    reference: chr 5
allele count: 1
allele frequency: 8.407883231317684e-6
allele num: 118936
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14427G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48570G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48570G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34015G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21404G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+495G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60790G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7253G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54551G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27657G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34015G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69458G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2094G>A
  hgvsp: ENST00000307360.5:c.2094G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28449G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70250G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu698Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

5-140237728-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237728
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237728
    reference: chr 5
allele count: 1
allele frequency: 8.408307407718826e-6
allele num: 118930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34016A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54552A>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14428A>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7254A>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2095A>T
  hgvsp: ENSP00000304234.5:p.Ile699Phe
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+496A>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27658A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60791A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21405A>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48571A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28450A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48571A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34016A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69459A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70251A>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile699Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-140237733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237733
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237733
    reference: chr 5
allele count: 177
allele frequency: 1.488295439257366e-3
allele num: 118928
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14433C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34021C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60796C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27663C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34021C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54557C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48576C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48576C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2100C>T
  hgvsp: ENST00000307360.5:c.2100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21410C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7259C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69464C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+501C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70256C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28455C>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28529
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile700Ile
num of homozygotes: 6
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

5-140237734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237734
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237734
    reference: chr 5
allele count: 1
allele frequency: 8.407035006893769e-6
allele num: 118948
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21411G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7260G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14434G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69465G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27664G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34022G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2101G>A
  hgvsp: ENSP00000304234.5:p.Ala701Thr
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70257G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48577G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60797G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34022G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54558G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28456G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+502G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48577G>A
  variant of: http://identifiers.org/hgnc/8670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala701Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

5-140237739-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237739
    reference: chr 5
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60802C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34027C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70262C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28461C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2106C>G
  hgvsp: ENSP00000304234.5:p.Ile702Met
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54563C>G
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34027C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14439C>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+507C>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27669C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48582C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21416C>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7265C>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48582C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69470C>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile702Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

5-140237740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237740
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237740
    reference: chr 5
allele count: 1
allele frequency: 8.404773911581778e-6
allele num: 118980
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2107T>C
  hgvsp: ENSP00000304234.5:p.Cys703Arg
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21417T>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27670T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34028T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+508T>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54564T>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48583T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48583T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70263T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7266T>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34028T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60803T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28462T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69471T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14440T>C
  variant of: http://identifiers.org/hgnc/8674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys703Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

5-140237742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237742
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237742
    reference: chr 5
allele count: 1
allele frequency: 8.406045628015669e-6
allele num: 118962
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2109C>T
  hgvsp: ENST00000307360.5:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60805C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69473C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28464C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54566C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70265C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27672C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34030C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14442C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48585C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34030C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48585C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7268C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21419C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+510C>T
  variant of: http://identifiers.org/hgnc/8664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys703Cys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-140237743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237743
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237743
    reference: chr 5
allele count: 2
allele frequency: 1.681548369738856e-5
allele num: 118938
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34031G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34031G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48586G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7269G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2110G>A
  hgvsp: ENSP00000304234.5:p.Ala704Thr
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+511G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27673G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14443G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60806G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21420G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28465G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54567G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48586G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69474G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70266G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala704Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

5-140237743-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237743
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237743
    reference: chr 5
allele count: 3
allele frequency: 2.522322554608283e-5
allele num: 118938
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34031G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21420G>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27673G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48586G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+511G>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14443G>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60806G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2110G>T
  hgvsp: ENSP00000304234.5:p.Ala704Ser
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48586G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34031G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69474G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7269G>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54567G>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70266G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28465G>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala704Ser
num of homozygotes: 1
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-140237744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237744
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237744
    reference: chr 5
allele count: 2
allele frequency: 1.68143527314916e-5
allele num: 118946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48587C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+512C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54568C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48587C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60807C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14444C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2111C>T
  hgvsp: ENSP00000304234.5:p.Ala704Val
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34032C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21421C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27674C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70267C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34032C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28466C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7270C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69475C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala704Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

5-140237751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237751
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237751
    reference: chr 5
allele count: 2
allele frequency: 1.681548369738856e-5
allele num: 118938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+519C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69482C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21428C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48594C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14451C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2118C>T
  hgvsp: ENST00000307360.5:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7277C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60814C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34039C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27681C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70274C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28473C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48594C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54575C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34039C>T
  variant of: http://identifiers.org/hgnc/8671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser706Ser
num of homozygotes: 1
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

5-140237758-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237758
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237758
    reference: chr 5
allele count: 1
allele frequency: 8.411419342899921e-6
allele num: 118886
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27688C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28480C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+526C>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60821C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70281C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48601C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34046C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48601C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7284C>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34046C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14458C>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2125C>G
  hgvsp: ENSP00000304234.5:p.Leu709Val
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21435C>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69489C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54582C>G
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu709Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

5-140237769-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237769
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237769
    reference: chr 5
allele count: 1
allele frequency: 8.421761832575375e-6
allele num: 118740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+537G>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28491G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34057G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34057G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14469G>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60832G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2136G>T
  hgvsp: ENST00000307360.5:c.2136G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7295G>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48612G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21446G>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70292G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27699G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48612G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69500G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54593G>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr712Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-140237776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237776
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237776
    reference: chr 5
allele count: 8
allele frequency: 6.744793862237585e-5
allele num: 118610
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14476C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34064C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48619C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2143C>T
  hgvsp: ENST00000307360.5:c.2143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+544C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21453C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7302C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27706C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70299C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60839C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48619C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69507C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34064C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28498C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54600C>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu715Leu
num of homozygotes: 2
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-140237781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237781
    reference: chr 5
allele count: 2
allele frequency: 1.687336539272758e-5
allele num: 118530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70304C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2148C>T
  hgvsp: ENST00000307360.5:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48624C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48624C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28503C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34069C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+549C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54605C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14481C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27711C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7307C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34069C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60844C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21458C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69512C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr716Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

5-140237782-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237782
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237782
    reference: chr 5
allele count: 3
allele frequency: 2.531047516198704e-5
allele num: 118528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70305A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34070A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48625A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28504A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69513A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21459A>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2149A>G
  hgvsp: ENSP00000304234.5:p.Thr717Ala
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54606A>G
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34070A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7308A>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60845A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48625A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+550A>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27712A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14482A>G
  variant of: http://identifiers.org/hgnc/8674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr717Ala
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140237784-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237784
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237784
    reference: chr 5
allele count: 21
allele frequency: 1.776259029316732e-4
allele num: 118226
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7310T>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14484T>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+552T>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48627T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2151T>C
  hgvsp: ENST00000307360.5:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34072T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21461T>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27714T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69515T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60847T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34072T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28506T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54608T>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70307T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48627T>C
  variant of: http://identifiers.org/hgnc/8670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr717Thr
num of homozygotes: 2
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-140237787-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237787
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237787
    reference: chr 5
allele count: 2
allele frequency: 1.691789744370569e-5
allele num: 118218
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34075A>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7313A>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+555A>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28509A>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48630A>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70310A>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54611A>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34075A>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2154A>C
  hgvsp: ENST00000307360.5:c.2154A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60850A>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48630A>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27717A>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21464A>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14487A>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69518A>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala718Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

5-140237788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237788
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237788
    reference: chr 5
allele count: 1
allele frequency: 8.471848048933394e-6
allele num: 118038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+556C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34076C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69519C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2155C>T
  hgvsp: ENST00000307360.5:c.2155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48631C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27718C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54612C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21465C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60851C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28510C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48631C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14488C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7314C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34076C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70311C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu719Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-140237796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237796
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237796
    reference: chr 5
allele count: 1
allele frequency: 8.505860537910621e-6
allele num: 117566
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27726C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48639C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2163C>T
  hgvsp: ENST00000307360.5:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69527C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48639C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34084C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21473C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14496C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60859C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70319C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28518C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7322C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34084C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+564C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54620C>T
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys721Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

5-140237811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237811
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237811
    reference: chr 5
allele count: 1
allele frequency: 8.556076525548445e-6
allele num: 116876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69542C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21488C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48654C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54635C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60874C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2178C>T
  hgvsp: ENST00000307360.5:c.2178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34099C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48654C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14511C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34099C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27741C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70334C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28533C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+579C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7337C>T
  variant of: http://identifiers.org/hgnc/8675
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr726Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

5-140237812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237812
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237812
    reference: chr 5
allele count: 3
allele frequency: 2.567789646672144e-5
allele num: 116832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+580G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70335G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48655G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2179G>A
  hgvsp: ENSP00000304234.5:p.Glu727Lys
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54636G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28534G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14512G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60875G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48655G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34100G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34100G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7338G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21489G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27742G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69543G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu727Lys
num of homozygotes: 1
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/5-140237819-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237819
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237819
    reference: chr 5
allele count: 1
allele frequency: 8.565310492505354e-6
allele num: 116750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34107C>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70342C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34107C>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7345C>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54643C>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28541C>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14519C>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48662C>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+587C>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2186C>A
  hgvsp: ENSP00000304234.5:p.Ala729Glu
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60882C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69550C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21496C>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27749C>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48662C>A
  variant of: http://identifiers.org/hgnc/8670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala729Glu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-140237826-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237826
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237826
    reference: chr 5
allele count: 370
allele frequency: 3.174984554129196e-3
allele num: 116536
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27756G>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48669G>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21503G>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70349G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+594G>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34114G>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14526G>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2193G>C
  hgvsp: ENST00000307360.5:c.2193G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28548G>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60889G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7352G>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48669G>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54650G>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69557G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34114G>C
  variant of: http://identifiers.org/hgnc/8671
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 27127
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19878
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly731Gly
num of homozygotes: 22
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

5-140237828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237828
    reference: chr 5
allele count: 2
allele frequency: 1.718035941311892e-5
allele num: 116412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27758C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+596C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2195C>T
  hgvsp: ENSP00000304234.5:p.Pro732Leu
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48671C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48671C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60891C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34116C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14528C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34116C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54652C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69559C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70351C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7354C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21505C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28550C>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro732Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

5-140237828-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237828
    reference: chr 5
allele count: 1
allele frequency: 8.59017970655946e-6
allele num: 116412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21505C>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60891C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54652C>G
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+596C>G
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34116C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7354C>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48671C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2195C>G
  hgvsp: ENSP00000304234.5:p.Pro732Arg
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28550C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34116C>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14528C>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27758C>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48671C>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69559C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70351C>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro732Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

5-140237829-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237829
    reference: chr 5
allele count: 2
allele frequency: 1.718951439621831e-5
allele num: 116350
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60892G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34117G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34117G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21506G>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28551G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+597G>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27759G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54653G>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69560G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7355G>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2196G>T
  hgvsp: ENST00000307360.5:c.2196G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14529G>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48672G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70352G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48672G>T
  variant of: http://identifiers.org/hgnc/8670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro732Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

5-140237834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237834
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237834
    reference: chr 5
allele count: 2
allele frequency: 1.719572170443993e-5
allele num: 116308
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34122A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14534A>G
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48677A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48677A>G
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34122A>G
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70357A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28556A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27764A>G
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2201A>G
  hgvsp: ENSP00000304234.5:p.Lys734Arg
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69565A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60897A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21511A>G
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7360A>G
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54658A>G
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+602A>G
  variant of: http://identifiers.org/hgnc/8664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27120
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys734Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-140237840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237840
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237840
    reference: chr 5
allele count: 1
allele frequency: 8.616232982939859e-6
allele num: 116060
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34128C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28562C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54664C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27770C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2207C>T
  hgvsp: ENSP00000304234.5:p.Thr736Met
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48683C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7366C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69571C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70363C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21517C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+608C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34128C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60903C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48683C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14540C>T
  variant of: http://identifiers.org/hgnc/8674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr736Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

5-140237845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237845
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237845
    reference: chr 5
allele count: 1
allele frequency: 8.628723294101405e-6
allele num: 115892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28567G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2212G>A
  hgvsp: ENSP00000304234.5:p.Val738Met
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+613G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34133G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27775G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34133G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14545G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69576G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70368G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48688G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60908G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48688G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7371G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21522G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54669G>A
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val738Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

5-140237848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237848
    reference: chr 5
allele count: 1
allele frequency: 8.636622735045688e-6
allele num: 115786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+616T>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70371T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34136T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69579T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34136T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48691T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48691T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60911T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2215T>C
  hgvsp: ENSP00000304234.5:p.Cys739Arg
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54672T>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27778T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14548T>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28570T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21525T>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7374T>C
  variant of: http://identifiers.org/hgnc/8675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys739Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-140237850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237850
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237850
    reference: chr 5
allele count: 2
allele frequency: 1.72869811744775e-5
allele num: 115694
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14550C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34138C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48693C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21527C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60913C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+618C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34138C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2217C>T
  hgvsp: ENST00000307360.5:c.2217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28572C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27780C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70373C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7376C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54674C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48693C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69581C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys739Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

5-140237853-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237853
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237853
    reference: chr 5
allele count: 340
allele frequency: 2.94168541270116e-3
allele num: 115580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+621T>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69584T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48696T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34141T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54677T>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27783T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34141T>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60916T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28575T>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14553T>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2220T>C
  hgvsp: ENST00000307360.5:c.2220T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7379T>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21530T>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48696T>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70376T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20312
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 26858
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Ser740Ser
num of homozygotes: 24
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-140237854-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237854
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237854
    reference: chr 5
allele count: 85
allele frequency: 7.355486327448944e-4
allele num: 115560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7380A>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+622A>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34142A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70377A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14554A>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54678A>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60917A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21531A>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2221A>T
  hgvsp: ENSP00000304234.5:p.Ser741Cys
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69585A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28576A>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48697A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34142A>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48697A>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27784A>T
  variant of: http://identifiers.org/hgnc/8672
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26850
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser741Cys
num of homozygotes: 3
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-140237856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237856
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237856
    reference: chr 5
allele count: 4
allele frequency: 3.467406380027739e-5
allele num: 115360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27786C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28578C>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+624C>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34144C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2223C>T
  hgvsp: ENST00000307360.5:c.2223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21533C>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7382C>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60919C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54680C>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34144C>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14556C>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48699C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69587C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48699C>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70379C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26792
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser741Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

5-140237857-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237857
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237857
    reference: chr 5
allele count: 12
allele frequency: 1.041088284286508e-4
allele num: 115264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48700G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70380G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27787G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14557G>T
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21534G>T
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60920G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34145G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28579G>T
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7383G>T
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+625G>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2224G>T
  hgvsp: ENSP00000304234.5:p.Ala742Ser
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48700G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54681G>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34145G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69588G>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala742Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140237859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237859
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237859
    reference: chr 5
allele count: 3
allele frequency: 2.604573631296557e-5
allele num: 115182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48702G>A
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34147G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34147G>A
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7385G>A
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60922G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2226G>A
  hgvsp: ENST00000307360.5:c.2226G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14559G>A
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27789G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70382G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+627G>A
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54683G>A
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28581G>A
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69590G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21536G>A
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48702G>A
  variant of: http://identifiers.org/hgnc/8670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20504
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala742Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

5-140237865-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237865
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237865
    reference: chr 5
allele count: 1
allele frequency: 8.712774670221478e-6
allele num: 114774
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000433378
  ensembl transcript: ENST00000529310
  gene symbol: PCDHA6
  hgvsc: ENST00000529310.1:c.2394+27795G>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34153G>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204961
  ensembl protein: ENSP00000436042
  ensembl transcript: ENST00000532602
  gene symbol: PCDHA9
  hgvsc: ENST00000532602.1:c.2394+7391G>C
  variant of: http://identifiers.org/hgnc/8675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204963
  ensembl protein: ENSP00000436426
  ensembl transcript: ENST00000525929
  gene symbol: PCDHA7
  hgvsc: ENST00000525929.1:c.2355+21542G>C
  variant of: http://identifiers.org/hgnc/8673
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081842
  ensembl protein: ENSP00000434113
  ensembl transcript: ENST00000527624
  gene symbol: PCDHA6
  hgvsc: ENST00000527624.1:c.1602+28587G>C
  variant of: http://identifiers.org/hgnc/8672
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34153G>C
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+633G>C
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2232G>C
  hgvsp: ENST00000307360.5:c.2232G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204962
  ensembl protein: ENSP00000434655
  ensembl transcript: ENST00000531613
  gene symbol: PCDHA8
  hgvsc: ENST00000531613.1:c.2394+14565G>C
  variant of: http://identifiers.org/hgnc/8674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48708G>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48708G>C
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70388G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60928G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54689G>C
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69596G>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly744Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140237867-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140237867
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140237867
    reference: chr 5
allele count: 1
allele frequency: 8.726460373143445e-6
allele num: 114594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000423470
  ensembl transcript: ENST00000512229
  gene symbol: PCDHA4
  hgvsc: ENST00000512229.2:c.2385+48710G>T
  variant of: http://identifiers.org/hgnc/8670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+60930G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000421030
  ensembl transcript: ENST00000506939
  gene symbol: PCDHA10
  hgvsc: ENST00000506939.2:c.1599+635G>T
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+70390G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.2394+54691G>T
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000436557
  ensembl transcript: ENST00000529859
  gene symbol: PCDHA5
  hgvsc: ENST00000529859.1:c.2352+34155G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250120
  ensembl protein: ENSP00000304234
  ensembl transcript: ENST00000307360
  gene symbol: PCDHA10
  hgvsc: ENST00000307360.5:c.2234G>T
  hgvsp: ENSP00000304234.5:p.Ser745Ile
  variant of: http://identifiers.org/hgnc/8664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204965
  ensembl protein: ENSP00000433416
  ensembl transcript: ENST00000529619
  gene symbol: PCDHA5
  hgvsc: ENST00000529619.1:c.2352+34155G>T
  variant of: http://identifiers.org/hgnc/8671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+69598G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204967
  ensembl protein: ENSP00000435300
  ensembl transcript: ENST00000530339
  gene symbol: PCDHA4
  hgvsc: ENST00000530339.1:c.2385+48710G>T
  variant of: http://identifiers.org/hgnc/8670
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ser745Ile
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 19036
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1826
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590077913817777e-5
allele num: 62890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.532e1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 1.496725e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.404e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 1810
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2722
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 885
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 421
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224889759921607e-4
allele num: 16328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.488453e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

FS
type: SiteQuality
SIO_000300: 8.179999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

GenotypeDepth
all individuals: 11
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 107
bin: 5.25e1
variant carriers: 7

GenotypeDepth
all individuals: 360
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 340
bin: 4.25e1
variant carriers: 6

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3078
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 2.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.224439818782907e-4
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.058036633052068e-4
allele num: 9718
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.064539521392314e-5
allele num: 11032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 66
allele frequency: 1.045925644195113e-3
allele num: 63102
num of homozygotes: 6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 1.194e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.167865175658124e-5
allele num: 63134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

East Asian
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allele count: 134
allele frequency: 1.576470588235294e-2
allele num: 8500
num of homozygotes: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 2.53e-2

ClippingRankSum
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SIO_000300: -1.98e-1

QD
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ReadPosRankSum
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SIO_000300: 4.51e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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FS
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SIO_000300: 1.235e0

BaseQRankSum
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SIO_000300: -3.274e0

DP
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SIO_000300: 1.491278e6

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 76
allele frequency: 1.178660049627792e-2
allele num: 6448
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.555808656036446e-3
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 109
allele frequency: 1.721686937292687e-3
allele num: 63310
num of homozygotes: 7

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.039956608208281e-5
allele num: 11062
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

QD
type: SiteQuality
SIO_000300: 1.46e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.75e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
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SIO_000300: 1.498054e6

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 615
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.020386072523904e-5
allele num: 11086
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

ReadPosRankSum
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SIO_000300: 8.82e-1

DP
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BaseQRankSum
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MQ
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SIO_000300: 5.931e1

ClippingRankSum
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SIO_000300: -4.64e-1

MQRankSum
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FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.024380249948781e-4
allele num: 9762
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63550
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.091e1

MQRankSum
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BaseQRankSum
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FS
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573564122738002e-5
allele num: 63550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
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Latino
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allele count: 0
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num of homozygotes: 0

BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele num: 11158
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FS
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele num: 11186
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.515506e6

ReadPosRankSum
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SIO_000300: -6.5e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele count: 1
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allele num: 63854
num of homozygotes: 0

DP
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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SIO_000300: -8.37e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 63894
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East Asian
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South Asian
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Latino
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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African
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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African
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -2.923e0

DP
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -5.69e-1

MQ
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SIO_000300: 6.0e1

QD
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BaseQRankSum
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SIO_000300: -7.6e-2

InbreedingCoeff
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SIO_000300: -9.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.554098156839586e-5
allele num: 64346
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

FS
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SIO_000300: 6.543e0

ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.092360180333861e-5
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64444
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
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InbreedingCoeff
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SIO_000300: 1.3e-3

DP
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ReadPosRankSum
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SIO_000300: 9.04e-1

ClippingRankSum
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SIO_000300: 1.38e0

BaseQRankSum
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SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
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SIO_000300: 5.948e1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552457540286273e-5
allele num: 64414
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.814e0

MQRankSum
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SIO_000300: -1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

QD
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.53855e6

VQSLOD
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BaseQRankSum
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SIO_000300: -2.061e0

MQ
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SIO_000300: 5.942e1

ReadPosRankSum
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SIO_000300: 7.48e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64512
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 64648
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South Asian
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.767096660187312e-4
allele num: 11318
num of homozygotes: 0

Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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African
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South Asian
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FS
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SIO_000300: 1.931e0

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.217285453438831e-4
allele num: 16430
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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QD
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VQSLOD
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.823010411152286e-5
allele num: 11334
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.627201776845483e-5
allele num: 64834
num of homozygotes: 0

QD
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -5.96e-1

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.627772807206985e-5
allele num: 64826
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.083659687316908e-5
allele num: 64858
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African
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Latino
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East Asian
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South Asian
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MQ
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QD
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FS
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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Other
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South Asian
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Latino
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FS
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MQ
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64974
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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variant carriers: 9

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 175
allele frequency: 2.029220779220779e-2
allele num: 8624
num of homozygotes: 6

African
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allele count: 2
allele frequency: 1.982553528945282e-4
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.538792970793709e-5
allele num: 64986
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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DP
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SIO_000300: 1.551536e6

FS
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MQ
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SIO_000300: 5.958e1

ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -5.84e-1

QD
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SIO_000300: 1.033e1

VQSLOD
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SIO_000300: 9.379999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

African
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allele num: 10108
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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MQ
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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QD
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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VQSLOD
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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African
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South Asian
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European (Non-Finnish)
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FS
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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QD
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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MQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.541798e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

FS
type: SiteQuality
SIO_000300: 4.448e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31696014828545e-4
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.203e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.539106e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 2.293e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.211e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 3.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.747e0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.63449298646728e-5
allele num: 64732
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

VQSLOD
type: SiteQuality
SIO_000300: -1.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

QD
type: SiteQuality
SIO_000300: 1.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.538652e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeDepth
all individuals: 897
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 13
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 3

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.993620414673046e-3
allele num: 10032
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64548
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.888888888888889e-5
allele num: 11250
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

DP
type: SiteQuality
SIO_000300: 1.532397e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.98e-2

QD
type: SiteQuality
SIO_000300: 1.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.657e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

GenotypeDepth
all individuals: 933
bin: 7.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 91
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 584
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.82e-1

DP
type: SiteQuality
SIO_000300: 1.53201e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 2.568e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

FS
type: SiteQuality
SIO_000300: 8.390000000000001e0

GenotypeDepth
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.552168379225778e-5
allele num: 64426
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.214e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 331
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558457750210392e-5
allele num: 64166
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 2.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

BaseQRankSum
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SIO_000300: -2.03e0

DP
type: SiteQuality
SIO_000300: 1.515615e6

QD
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 8
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.568922777620886e-5
allele num: 63738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.03951367781155e-4
allele num: 9870
num of homozygotes: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63708
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -3.15e-1

ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.146281499692685e-5
allele num: 16270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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DP
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SIO_000300: 1.502868e6

VQSLOD
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FS
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MQRankSum
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
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SIO_000300: 8.100000000000001e-1

ReadPosRankSum
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SIO_000300: -3.47e-1

BaseQRankSum
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GenotypeDepth
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variant carriers: 44

GenotypeDepth
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variant carriers: 10

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.57410905427528e-5
allele num: 63528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 361
allele frequency: 3.657548125633232e-2
allele num: 9870
num of homozygotes: 22

Latino
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allele num: 10994
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East Asian
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allele count: 0
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Other
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DP
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FS
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: 7.3e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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African
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Latino
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.151293606025273e-5
allele num: 63466
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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QD
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 63424
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Other
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 63406
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European (Finnish)
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East Asian
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Other
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Latino
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South Asian
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African
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BaseQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Other
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Latino
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QD
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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Other
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African
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East Asian
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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QD
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 292

GenotypeQuality
all individuals: 42547
bin: 6.25e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.562766549230484e-4
allele num: 10786
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 113
allele frequency: 1.776171015403961e-2
allele num: 6362
num of homozygotes: 6

South Asian
type: Population
allele count: 20
allele frequency: 1.237623762376238e-3
allele num: 16160
num of homozygotes: 1

African
type: Population
allele count: 14
allele frequency: 1.424211597151577e-3
allele num: 9830
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 179
allele frequency: 2.840818917632122e-3
allele num: 63010
num of homozygotes: 15

Other
type: Population
allele count: 8
allele frequency: 9.36768149882904e-3
allele num: 854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.089e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

DP
type: SiteQuality
SIO_000300: 1.487825e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.417e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeDepth
all individuals: 715
bin: 3.75e1
variant carriers: 12

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 199
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 20348
bin: 2.25e1
variant carriers: 5

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1267
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 41
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variant carriers: 4

GenotypeDepth
all individuals: 130
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variant carriers: 9

GenotypeQuality
all individuals: 1570
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 205
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variant carriers: 1

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 1

GenotypeQuality
all individuals: 42636
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6661
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variant carriers: 0

GenotypeQuality
all individuals: 3606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.75e1
variant carriers: 80

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.347417840375587e-3
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.186587478346944e-5
allele num: 16164
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.016880211511084e-4
allele num: 9834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.856693903205531e-4
allele num: 6364
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.639079606606049e-4
allele num: 10778
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.127127254254508e-3
allele num: 62992
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

DP
type: SiteQuality
SIO_000300: 1.486414e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeDepth
all individuals: 5729
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 56
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variant carriers: 0

GenotypeDepth
all individuals: 706
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variant carriers: 0

GenotypeDepth
all individuals: 37
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variant carriers: 0

GenotypeDepth
all individuals: 2305
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GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 4
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GenotypeDepth
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
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variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 42406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.298865538404315e-5
allele num: 10754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.769627015167414e-5
allele num: 62898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

FS
type: SiteQuality
SIO_000300: 7.724e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 1.483477e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26717
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 56
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 20
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variant carriers: 0

GenotypeDepth
all individuals: 1254
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variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 214
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variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
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variant carriers: 0

GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.792776019363247e-4
allele num: 10742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62830
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.176182707993475e-4
allele num: 9808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.024e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.481069e6

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

GenotypeDepth
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
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variant carriers: 0

GenotypeDepth
all individuals: 57
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variant carriers: 1

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 1152
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variant carriers: 0

GenotypeDepth
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 442
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GenotypeQuality
all individuals: 1538
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variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 6590
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variant carriers: 0

GenotypeQuality
all individuals: 42716
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variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 1170
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 438
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 3775
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.056857550438149e-4
allele num: 9814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.48205e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20437
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5579
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
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variant carriers: 0

GenotypeDepth
all individuals: 26610
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 6563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.75e1
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GenotypeQuality
all individuals: 128
bin: 9.25e1
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GenotypeQuality
all individuals: 1148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
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GenotypeQuality
all individuals: 4116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599130073240157e-5
allele num: 62534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.333e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.475209e6

FS
type: SiteQuality
SIO_000300: 2.469e0

MQRankSum
type: SiteQuality
SIO_000300: -1.015e0

QD
type: SiteQuality
SIO_000300: 5.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.066e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0