5-176079822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079822
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079822
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.162C>T
  hgvsp: ENSP00000423610.1:p.Arg55Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.483C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*198C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.364C>T
  hgvsp: ENSP00000426650.1:p.Arg122Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.364C>T
  hgvsp: ENSP00000385665.2:p.Arg122Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.166C>T
  hgvsp: ENSP00000298564.10:p.Arg56Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.364C>T
  hgvsp: ENSP00000309036.8:p.Arg122Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.295C>T
  hgvsp: ENSP00000425212.1:p.Arg99Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.328C>T
  hgvsp: ENSP00000423957.1:p.Arg110Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.364C>T
  hgvsp: ENSP00000422053.1:p.Arg122Ter
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg122Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

5-176079840-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079840
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079840
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.180T>G
  hgvsp: ENSP00000423610.1:p.Phe61Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.346T>G
  hgvsp: ENSP00000423957.1:p.Phe116Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.501T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.184T>G
  hgvsp: ENSP00000298564.10:p.Phe62Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*216T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.382T>G
  hgvsp: ENSP00000422053.1:p.Phe128Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.382T>G
  hgvsp: ENSP00000385665.2:p.Phe128Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.382T>G
  hgvsp: ENSP00000309036.8:p.Phe128Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.382T>G
  hgvsp: ENSP00000426650.1:p.Phe128Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.313T>G
  hgvsp: ENSP00000425212.1:p.Phe105Val
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe128Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-176079845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079845
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079845
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.189C>T
  hgvsp: ENST00000298564.10:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.506C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.387C>T
  hgvsp: ENST00000405525.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.318C>T
  hgvsp: ENST00000503045.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.387C>T
  hgvsp: ENST00000310032.8:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.387C>T
  hgvsp: ENST00000508164.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*221C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.185C>T
  hgvsp: ENST00000507471.1:c.185C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.351C>T
  hgvsp: ENST00000504168.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.387C>T
  hgvsp: ENST00000515708.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile129Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-176079847-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079847
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079847
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.508A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.320A>G
  hgvsp: ENSP00000425212.1:p.Asn107Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.389A>G
  hgvsp: ENSP00000385665.2:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.187A>G
  hgvsp: ENSP00000423610.1:p.Asn63Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.389A>G
  hgvsp: ENSP00000309036.8:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.389A>G
  hgvsp: ENSP00000422053.1:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*223A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.353A>G
  hgvsp: ENSP00000423957.1:p.Asn118Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.389A>G
  hgvsp: ENSP00000426650.1:p.Asn130Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.191A>G
  hgvsp: ENSP00000298564.10:p.Asn64Ser
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn130Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

5-176079854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079854
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079854
    reference: chr 5
allele count: 8
allele frequency: 6.589134517181169e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.396C>T
  hgvsp: ENST00000515708.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.360C>T
  hgvsp: ENST00000504168.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.396C>T
  hgvsp: ENST00000405525.2:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.515C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.396C>T
  hgvsp: ENST00000310032.8:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.396C>T
  hgvsp: ENST00000508164.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.327C>T
  hgvsp: ENST00000503045.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*230C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.198C>T
  hgvsp: ENST00000298564.10:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.194C>T
  hgvsp: ENST00000507471.1:c.194C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn132Asn
num of homozygotes: 1
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

5-176079855-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079855
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079855
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.397G>C
  hgvsp: ENSP00000422053.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.397G>C
  hgvsp: ENSP00000385665.2:p.Val133Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.195G>C
  hgvsp: ENSP00000423610.1:p.Val66Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.328G>C
  hgvsp: ENSP00000425212.1:p.Val110Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.397G>C
  hgvsp: ENSP00000309036.8:p.Val133Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*231G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.199G>C
  hgvsp: ENSP00000298564.10:p.Val67Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.516G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.397G>C
  hgvsp: ENSP00000426650.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.361G>C
  hgvsp: ENSP00000423957.1:p.Val121Leu
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val133Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-176079867-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079867
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079867
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.409C>A
  hgvsp: ENST00000515708.1:c.409C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.207C>A
  hgvsp: ENST00000507471.1:c.207C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.211C>A
  hgvsp: ENST00000298564.10:c.211C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*243C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.528C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.373C>A
  hgvsp: ENST00000504168.1:c.373C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.340C>A
  hgvsp: ENST00000503045.1:c.340C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.409C>A
  hgvsp: ENST00000508164.1:c.409C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.409C>A
  hgvsp: ENST00000405525.2:c.409C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.409C>A
  hgvsp: ENST00000310032.8:c.409C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg137Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

5-176079867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079867
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079867
    reference: chr 5
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.373C>T
  hgvsp: ENSP00000423957.1:p.Arg125Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.340C>T
  hgvsp: ENSP00000425212.1:p.Arg114Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.207C>T
  hgvsp: ENSP00000423610.1:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.211C>T
  hgvsp: ENSP00000298564.10:p.Arg71Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.528C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*243C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.409C>T
  hgvsp: ENSP00000385665.2:p.Arg137Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.409C>T
  hgvsp: ENSP00000422053.1:p.Arg137Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.409C>T
  hgvsp: ENSP00000426650.1:p.Arg137Trp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.409C>T
  hgvsp: ENSP00000309036.8:p.Arg137Trp
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg137Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

5-176079872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079872
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079872
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.378C>T
  hgvsp: ENST00000504168.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.414C>T
  hgvsp: ENST00000508164.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.533C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.345C>T
  hgvsp: ENST00000503045.1:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.414C>T
  hgvsp: ENST00000310032.8:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.414C>T
  hgvsp: ENST00000515708.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.212C>T
  hgvsp: ENST00000507471.1:c.212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.414C>T
  hgvsp: ENST00000405525.2:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.216C>T
  hgvsp: ENST00000298564.10:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*248C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp138Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176079873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079873
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079873
    reference: chr 5
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.346G>A
  hgvsp: ENSP00000425212.1:p.Asp116Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.217G>A
  hgvsp: ENSP00000298564.10:p.Asp73Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.534G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.415G>A
  hgvsp: ENSP00000426650.1:p.Asp139Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.415G>A
  hgvsp: ENSP00000422053.1:p.Asp139Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.415G>A
  hgvsp: ENSP00000385665.2:p.Asp139Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.415G>A
  hgvsp: ENSP00000309036.8:p.Asp139Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.379G>A
  hgvsp: ENSP00000423957.1:p.Asp127Asn
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*249G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.213G>A
  hgvsp: ENSP00000423610.1:p.Asp72Asn
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp139Asn
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-176079877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079877
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079877
    reference: chr 5
allele count: 1376
allele frequency: 1.133368476541908e-2
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.419T>C
  hgvsp: ENSP00000309036.8:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.538T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.221T>C
  hgvsp: ENSP00000298564.10:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*253T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.419T>C
  hgvsp: ENSP00000385665.2:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.419T>C
  hgvsp: ENSP00000422053.1:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.350T>C
  hgvsp: ENSP00000425212.1:p.Ile117Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.383T>C
  hgvsp: ENSP00000423957.1:p.Ile128Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.419T>C
  hgvsp: ENSP00000426650.1:p.Ile140Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.217T>C
  hgvsp: ENSP00000423610.1:p.Ile73Thr
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 9.75e1
  variant carriers: 1279
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile140Thr
num of homozygotes: 19
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-176079878-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079878
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079878
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.539T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.218T>G
  hgvsp: ENSP00000423610.1:p.Ile73Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.420T>G
  hgvsp: ENSP00000385665.2:p.Ile140Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*254T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.420T>G
  hgvsp: ENSP00000422053.1:p.Ile140Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.222T>G
  hgvsp: ENSP00000298564.10:p.Ile74Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.420T>G
  hgvsp: ENSP00000309036.8:p.Ile140Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.420T>G
  hgvsp: ENSP00000426650.1:p.Ile140Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.351T>G
  hgvsp: ENSP00000425212.1:p.Ile117Met
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.384T>G
  hgvsp: ENSP00000423957.1:p.Ile128Met
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile140Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

5-176079881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079881
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079881
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.423C>T
  hgvsp: ENST00000405525.2:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.225C>T
  hgvsp: ENST00000298564.10:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.423C>T
  hgvsp: ENST00000515708.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.423C>T
  hgvsp: ENST00000310032.8:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.221C>T
  hgvsp: ENST00000507471.1:c.221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.542C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.423C>T
  hgvsp: ENST00000508164.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.354C>T
  hgvsp: ENST00000503045.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.387C>T
  hgvsp: ENST00000504168.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*257C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp141Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

5-176079895-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079895
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079895
    reference: chr 5
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.556T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.437T>C
  hgvsp: ENSP00000385665.2:p.Ile146Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.437T>C
  hgvsp: ENSP00000309036.8:p.Ile146Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.437T>C
  hgvsp: ENSP00000422053.1:p.Ile146Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.239T>C
  hgvsp: ENSP00000298564.10:p.Ile80Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*271T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.401T>C
  hgvsp: ENSP00000423957.1:p.Ile134Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.368T>C
  hgvsp: ENSP00000425212.1:p.Ile123Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.437T>C
  hgvsp: ENSP00000426650.1:p.Ile146Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.235T>C
  hgvsp: ENSP00000423610.1:p.Ile79Thr
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile146Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

5-176079903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079903
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079903
    reference: chr 5
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.445G>A
  hgvsp: ENSP00000309036.8:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.564G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.445G>A
  hgvsp: ENSP00000422053.1:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.445G>A
  hgvsp: ENSP00000385665.2:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.247G>A
  hgvsp: ENSP00000298564.10:p.Ala83Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.376G>A
  hgvsp: ENSP00000425212.1:p.Ala126Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.409G>A
  hgvsp: ENSP00000423957.1:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.445G>A
  hgvsp: ENSP00000426650.1:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*279G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.243G>A
  hgvsp: ENSP00000423610.1:p.Ala82Thr
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala149Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

5-176079906-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079906
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079906
    reference: chr 5
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.567C>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.448C>G
  hgvsp: ENSP00000385665.2:p.Gln150Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.250C>G
  hgvsp: ENSP00000298564.10:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.246C>G
  hgvsp: ENSP00000423610.1:p.Gln83Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.412C>G
  hgvsp: ENSP00000423957.1:p.Gln138Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.448C>G
  hgvsp: ENSP00000309036.8:p.Gln150Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.448C>G
  hgvsp: ENSP00000422053.1:p.Gln150Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.448C>G
  hgvsp: ENSP00000426650.1:p.Gln150Glu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*282C>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.379C>G
  hgvsp: ENSP00000425212.1:p.Gln127Glu
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln150Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-176079909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079909
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079909
    reference: chr 5
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.415G>A
  hgvsp: ENSP00000423957.1:p.Glu139Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.451G>A
  hgvsp: ENSP00000426650.1:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.253G>A
  hgvsp: ENSP00000298564.10:p.Glu85Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.570G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.249G>A
  hgvsp: ENSP00000423610.1:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.451G>A
  hgvsp: ENSP00000422053.1:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.451G>A
  hgvsp: ENSP00000385665.2:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.382G>A
  hgvsp: ENSP00000425212.1:p.Glu128Lys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*285G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.451G>A
  hgvsp: ENSP00000309036.8:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu151Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

5-176079911-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079911
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079911
    reference: chr 5
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*287A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.453A>T
  hgvsp: ENSP00000422053.1:p.Glu151Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.384A>T
  hgvsp: ENSP00000425212.1:p.Glu128Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.255A>T
  hgvsp: ENSP00000298564.10:p.Glu85Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.251A>T
  hgvsp: ENSP00000423610.1:p.Glu84Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.453A>T
  hgvsp: ENSP00000426650.1:p.Glu151Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.417A>T
  hgvsp: ENSP00000423957.1:p.Glu139Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.572A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.453A>T
  hgvsp: ENSP00000385665.2:p.Glu151Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.453A>T
  hgvsp: ENSP00000309036.8:p.Glu151Asp
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu151Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

5-176079914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079914
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079914
    reference: chr 5
allele count: 17
allele frequency: 1.401091202795589e-4
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456C>T
  hgvsp: ENST00000515708.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254C>T
  hgvsp: ENST00000507471.1:c.254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258C>T
  hgvsp: ENST00000298564.10:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456C>T
  hgvsp: ENST00000508164.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420C>T
  hgvsp: ENST00000504168.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387C>T
  hgvsp: ENST00000503045.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456C>T
  hgvsp: ENST00000405525.2:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456C>T
  hgvsp: ENST00000310032.8:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.575C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.456C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-176079929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079929
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079929
    reference: chr 5
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.590C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+15C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-176079943-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079943
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079943
    reference: chr 5
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.604T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+29T>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+29T>G
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-176079947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079947
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079947
    reference: chr 5
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.608G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+33G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+33G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

5-176079949-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079949
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079949
    reference: chr 5
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.610A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+35A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+35A>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

5-176079952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079952
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079952
    reference: chr 5
allele count: 144
allele frequency: 1.191500628847554e-3
allele num: 120856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.613C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+38C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+38C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 3
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

5-176079953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079953
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079953
    reference: chr 5
allele count: 465
allele frequency: 3.847745138601572e-3
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.614G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+39G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+39G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 5.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 7.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 9.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 6.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 13
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

5-176079958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079958
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079958
    reference: chr 5
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.619C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+44C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+44C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-176079965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176079965
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176079965
    reference: chr 5
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.456+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.258+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.387+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.420+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.626G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.456+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.254+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*290+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.456+51G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.456+51G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

5-176081847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081847
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081847
    reference: chr 5
allele count: 1
allele frequency: 9.124420599291944e-6
allele num: 109596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1232G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2508G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-49G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1232G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3876
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-176081847-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081847
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081847
    reference: chr 5
allele count: 1
allele frequency: 9.124420599291944e-6
allele num: 109596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-49G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-49G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2508G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-49G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1232G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1232G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-49G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-49G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-49G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-49G>C
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6825
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

5-176081852-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081852
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081853
    reference: chr 5
allele count: 11
allele frequency: 1.000181851245681e-4
allele num: 109980
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-41dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-41dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-41dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1224dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1224dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2516dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-41dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-41dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-41dupG
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-41dupG
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13622
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16351
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12804
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176081856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081856
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081856
    reference: chr 5
allele count: 87226
allele frequency: 7.68511013215859e-1
allele num: 113500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1223A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-40A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1223A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2517A>G
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.25e1
  variant carriers: 4262
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 14320
  bin: 1.75e1
  variant carriers: 13695
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 7.5e0
  variant carriers: 2353
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 1.25e1
  variant carriers: 8152
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.75e1
  variant carriers: 1944
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 14939
  bin: 2.25e1
  variant carriers: 13430
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.25e1
  variant carriers: 888
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 2.75e1
  variant carriers: 8820
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.75e1
  variant carriers: 396
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 9.25e1
  variant carriers: 1321
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 984
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 7.75e1
  variant carriers: 2574
num of homozygotes: 34208
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-176081869-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081869
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081869
    reference: chr 5
allele count: 37
allele frequency: 3.246411399291054e-4
allele num: 113972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2530A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-27A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-27A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-27A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1210A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1210A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-27A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-27A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-27A>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-27A>C
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23217
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12413
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-176081871-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081871
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081871
    reference: chr 5
allele count: 1
allele frequency: 8.772853282801699e-6
allele num: 113988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2532C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1208C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-25C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1208C>A
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-176081878-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081878
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081878
    reference: chr 5
allele count: 1
allele frequency: 8.743245842586601e-6
allele num: 114374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2539T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-18T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-18T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-18T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-18T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-18T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-18T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1201T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1201T>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-18T>C
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

5-176081879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081879
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081879
    reference: chr 5
allele count: 9
allele frequency: 7.871123471690192e-5
allele num: 114342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1200C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2540C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-17C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1200C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26952
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

5-176081881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081881
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081881
    reference: chr 5
allele count: 1
allele frequency: 8.742481465939292e-6
allele num: 114384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1198C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2542C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-15C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1198C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-15C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

5-176081882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081882
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081882
    reference: chr 5
allele count: 1
allele frequency: 8.735455466648032e-6
allele num: 114476
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-14C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2543C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-14C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1197C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-14C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-14C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1197C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-14C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-14C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-14C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

5-176081886-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081886
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081885
    reference: chr 5
allele count: 1
allele frequency: 8.719308035714285e-6
allele num: 114688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-5delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1188delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-5delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-5delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-5delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-5delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2552delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-5delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1188delC
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-5delC
  variant of: http://identifiers.org/hgnc/13594
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3967
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: GC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

5-176081895-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081895
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081895
    reference: chr 5
allele count: 2
allele frequency: 1.733162327983639e-5
allele num: 115396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.388-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.255-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.457-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.457-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.457-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.421-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1184G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2556G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.457-1G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1184G>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36450
  bin: 6.25e1
  variant carriers: 0
hgvs: c.457-1G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

5-176081899-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081899
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081899
    reference: chr 5
allele count: 1
allele frequency: 8.648873051841344e-6
allele num: 115622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.424T>A
  hgvsp: ENSP00000423957.1:p.Ser142Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.460T>A
  hgvsp: ENSP00000426650.1:p.Ser154Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.460T>A
  hgvsp: ENSP00000422053.1:p.Ser154Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1180T>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.391T>A
  hgvsp: ENSP00000425212.1:p.Ser131Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1180T>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.460T>A
  hgvsp: ENSP00000309036.8:p.Ser154Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2560T>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.460T>A
  hgvsp: ENSP00000385665.2:p.Ser154Thr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.258T>A
  hgvsp: ENSP00000423610.1:p.Ser87Thr
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser154Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-176081903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081903
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081903
    reference: chr 5
allele count: 1
allele frequency: 8.635429439906046e-6
allele num: 115802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.428G>A
  hgvsp: ENSP00000423957.1:p.Cys143Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.262G>A
  hgvsp: ENSP00000423610.1:p.Cys88Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1176G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.464G>A
  hgvsp: ENSP00000422053.1:p.Cys155Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.395G>A
  hgvsp: ENSP00000425212.1:p.Cys132Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.464G>A
  hgvsp: ENSP00000426650.1:p.Cys155Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.464G>A
  hgvsp: ENSP00000385665.2:p.Cys155Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.464G>A
  hgvsp: ENSP00000309036.8:p.Cys155Tyr
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1176G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2564G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15907
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37391
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys155Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

5-176081907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081907
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081907
    reference: chr 5
allele count: 28870
allele frequency: 2.463058389925946e-1
allele num: 117212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.399C>T
  hgvsp: ENST00000503045.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.468C>T
  hgvsp: ENST00000508164.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.468C>T
  hgvsp: ENST00000405525.2:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.432C>T
  hgvsp: ENST00000504168.1:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2568C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1172C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1172C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.266C>T
  hgvsp: ENST00000507471.1:c.266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.468C>T
  hgvsp: ENST00000310032.8:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.468C>T
  hgvsp: ENST00000515708.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 4.25e1
  variant carriers: 2313
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 434
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.75e1
  variant carriers: 1582
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.25e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 1.75e1
  variant carriers: 1927
genotype depth: GenotypeDepth
  all individuals: 21138
  bin: 2.25e1
  variant carriers: 3286
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 1067
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 15380
  bin: 2.75e1
  variant carriers: 4211
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 655
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.25e1
  variant carriers: 4099
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.75e1
  variant carriers: 3382
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 770
genotype quality: GenotypeQuality
  all individuals: 26049
  bin: 6.25e1
  variant carriers: 266
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.25e1
  variant carriers: 239
hgvs: p.Cys156Cys
num of homozygotes: 3905
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-176081908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081908
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081908
    reference: chr 5
allele count: 6
allele frequency: 5.185646131507986e-5
allele num: 115704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.469G>A
  hgvsp: ENSP00000422053.1:p.Gly157Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.469G>A
  hgvsp: ENSP00000426650.1:p.Gly157Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.433G>A
  hgvsp: ENSP00000423957.1:p.Gly145Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1171G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.469G>A
  hgvsp: ENSP00000385665.2:p.Gly157Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1171G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.469G>A
  hgvsp: ENSP00000309036.8:p.Gly157Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.400G>A
  hgvsp: ENSP00000425212.1:p.Gly134Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2569G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.267G>A
  hgvsp: ENSP00000423610.1:p.Gly90Arg
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly157Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

5-176081914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081914
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081914
    reference: chr 5
allele count: 2
allele frequency: 1.731751666810979e-5
allele num: 115490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.439C>T
  hgvsp: ENSP00000423957.1:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2575C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.475C>T
  hgvsp: ENSP00000385665.2:p.Arg159Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.273C>T
  hgvsp: ENSP00000423610.1:p.Arg92Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1165C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.475C>T
  hgvsp: ENSP00000422053.1:p.Arg159Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.406C>T
  hgvsp: ENSP00000425212.1:p.Arg136Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.475C>T
  hgvsp: ENSP00000426650.1:p.Arg159Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.475C>T
  hgvsp: ENSP00000309036.8:p.Arg159Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1165C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21955
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25776
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42635
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg159Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

5-176081915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081915
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081915
    reference: chr 5
allele count: 2
allele frequency: 1.73235166738848e-5
allele num: 115450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.440G>A
  hgvsp: ENSP00000423957.1:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2576G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1164G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.476G>A
  hgvsp: ENSP00000385665.2:p.Arg159Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.407G>A
  hgvsp: ENSP00000425212.1:p.Arg136Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.476G>A
  hgvsp: ENSP00000309036.8:p.Arg159Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.476G>A
  hgvsp: ENSP00000422053.1:p.Arg159Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.476G>A
  hgvsp: ENSP00000426650.1:p.Arg159Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.274G>A
  hgvsp: ENSP00000423610.1:p.Arg92Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1164G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22017
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg159Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

5-176081918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081918
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081918
    reference: chr 5
allele count: 1
allele frequency: 8.680555555555556e-6
allele num: 115200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.277G>A
  hgvsp: ENSP00000423610.1:p.Gly93Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.479G>A
  hgvsp: ENSP00000309036.8:p.Gly160Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.479G>A
  hgvsp: ENSP00000422053.1:p.Gly160Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1161G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.479G>A
  hgvsp: ENSP00000385665.2:p.Gly160Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1161G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.479G>A
  hgvsp: ENSP00000426650.1:p.Gly160Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2579G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.410G>A
  hgvsp: ENSP00000425212.1:p.Gly137Asp
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.443G>A
  hgvsp: ENSP00000423957.1:p.Gly148Asp
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly160Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

5-176081921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081921
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081921
    reference: chr 5
allele count: 2
allele frequency: 1.740068558701213e-5
allele num: 114938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.482C>T
  hgvsp: ENSP00000385665.2:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.413C>T
  hgvsp: ENSP00000425212.1:p.Pro138Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.482C>T
  hgvsp: ENSP00000422053.1:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.482C>T
  hgvsp: ENSP00000426650.1:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2582C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.446C>T
  hgvsp: ENSP00000423957.1:p.Pro149Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1158C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1158C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.280C>T
  hgvsp: ENSP00000423610.1:p.Pro94Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.482C>T
  hgvsp: ENSP00000309036.8:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro161Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

5-176081924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081924
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081924
    reference: chr 5
allele count: 107
allele frequency: 9.325106323642195e-4
allele num: 114744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.485A>G
  hgvsp: ENSP00000385665.2:p.Asn162Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.485A>G
  hgvsp: ENSP00000422053.1:p.Asn162Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.485A>G
  hgvsp: ENSP00000426650.1:p.Asn162Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.416A>G
  hgvsp: ENSP00000425212.1:p.Asn139Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1155A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2585A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.485A>G
  hgvsp: ENSP00000309036.8:p.Asn162Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1155A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.449A>G
  hgvsp: ENSP00000423957.1:p.Asn150Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.283A>G
  hgvsp: ENSP00000423610.1:p.Asn95Ser
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25292
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 21972
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn162Ser
num of homozygotes: 1
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

5-176081930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081930
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081930
    reference: chr 5
allele count: 1
allele frequency: 8.777473492030055e-6
allele num: 113928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1149G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.491G>A
  hgvsp: ENSP00000422053.1:p.Trp164Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.491G>A
  hgvsp: ENSP00000385665.2:p.Trp164Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.422G>A
  hgvsp: ENSP00000425212.1:p.Trp141Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.455G>A
  hgvsp: ENSP00000423957.1:p.Trp152Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.491G>A
  hgvsp: ENSP00000309036.8:p.Trp164Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2591G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1149G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.491G>A
  hgvsp: ENSP00000426650.1:p.Trp164Ter
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.289G>A
  hgvsp: ENSP00000423610.1:p.Trp97Ter
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp164Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

5-176081931-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081931
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081931
    reference: chr 5
allele count: 2
allele frequency: 1.758303588697625e-5
allele num: 113746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.290G>C
  hgvsp: ENSP00000423610.1:p.Trp97Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1148G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.492G>C
  hgvsp: ENSP00000385665.2:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2592G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.492G>C
  hgvsp: ENSP00000422053.1:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.492G>C
  hgvsp: ENSP00000426650.1:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.423G>C
  hgvsp: ENSP00000425212.1:p.Trp141Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.492G>C
  hgvsp: ENSP00000309036.8:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.456G>C
  hgvsp: ENSP00000423957.1:p.Trp152Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1148G>C
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp164Cys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-176081931-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081931
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081931
    reference: chr 5
allele count: 1
allele frequency: 8.791517943488123e-6
allele num: 113746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.492G>T
  hgvsp: ENSP00000385665.2:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.492G>T
  hgvsp: ENSP00000422053.1:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2592G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.492G>T
  hgvsp: ENSP00000426650.1:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1148G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.456G>T
  hgvsp: ENSP00000423957.1:p.Trp152Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.290G>T
  hgvsp: ENSP00000423610.1:p.Trp97Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.492G>T
  hgvsp: ENSP00000309036.8:p.Trp164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.423G>T
  hgvsp: ENSP00000425212.1:p.Trp141Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1148G>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp164Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

5-176081934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081934
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081934
    reference: chr 5
allele count: 1
allele frequency: 8.835483300936561e-6
allele num: 113180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.426C>T
  hgvsp: ENST00000503045.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.495C>T
  hgvsp: ENST00000515708.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.293C>T
  hgvsp: ENST00000507471.1:c.293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2595C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.495C>T
  hgvsp: ENST00000405525.2:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.459C>T
  hgvsp: ENST00000504168.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.495C>T
  hgvsp: ENST00000508164.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1145C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.495C>T
  hgvsp: ENST00000310032.8:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1145C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23954
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn165Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-176081943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081943
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081943
    reference: chr 5
allele count: 1
allele frequency: 9.022013713460844e-6
allele num: 110840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1136C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.504C>T
  hgvsp: ENST00000405525.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.302C>T
  hgvsp: ENST00000507471.1:c.302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.504C>T
  hgvsp: ENST00000508164.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1136C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.504C>T
  hgvsp: ENST00000310032.8:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.504C>T
  hgvsp: ENST00000515708.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.468C>T
  hgvsp: ENST00000504168.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.435C>T
  hgvsp: ENST00000503045.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2604C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile168Ile
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

5-176081951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081951
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081951
    reference: chr 5
allele count: 1
allele frequency: 9.333059563586135e-6
allele num: 107146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2612A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1128A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.443A>G
  hgvsp: ENSP00000425212.1:p.Asn148Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1128A>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.512A>G
  hgvsp: ENSP00000422053.1:p.Asn171Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.512A>G
  hgvsp: ENSP00000385665.2:p.Asn171Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.476A>G
  hgvsp: ENSP00000423957.1:p.Asn159Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.512A>G
  hgvsp: ENSP00000426650.1:p.Asn171Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.310A>G
  hgvsp: ENSP00000423610.1:p.Asn104Ser
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.512A>G
  hgvsp: ENSP00000309036.8:p.Asn171Ser
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn171Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

5-176081964-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081964
    reference: chr 5
allele count: 1
allele frequency: 1.000920847179405e-5
allele num: 99908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.525G>C
  hgvsp: ENSP00000422053.1:p.Leu175Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.489G>C
  hgvsp: ENSP00000423957.1:p.Leu163Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.525G>C
  hgvsp: ENSP00000309036.8:p.Leu175Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2625G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.456G>C
  hgvsp: ENSP00000425212.1:p.Leu152Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1115G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.525G>C
  hgvsp: ENSP00000426650.1:p.Leu175Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.525G>C
  hgvsp: ENSP00000385665.2:p.Leu175Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.323G>C
  hgvsp: ENSP00000423610.1:p.Leu108Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1115G>C
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu175Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-176081970-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081970
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081970
    reference: chr 5
allele count: 2
allele frequency: 2.113226685826589e-5
allele num: 94642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.495C>A
  hgvsp: ENST00000504168.1:c.495C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.531C>A
  hgvsp: ENST00000310032.8:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.462C>A
  hgvsp: ENST00000503045.1:c.462C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.329C>A
  hgvsp: ENST00000507471.1:c.329C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.531C>A
  hgvsp: ENST00000405525.2:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.531C>A
  hgvsp: ENST00000515708.1:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.531C>A
  hgvsp: ENST00000508164.1:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2631C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1109C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1109C>A
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro177Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

5-176081975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081975
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081975
    reference: chr 5
allele count: 3
allele frequency: 3.274751664665429e-5
allele num: 91610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2636G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.467G>A
  hgvsp: ENSP00000425212.1:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1104G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.500G>A
  hgvsp: ENSP00000423957.1:p.Arg167Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.536G>A
  hgvsp: ENSP00000422053.1:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.334G>A
  hgvsp: ENSP00000423610.1:p.Arg112Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.536G>A
  hgvsp: ENSP00000426650.1:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.536G>A
  hgvsp: ENSP00000309036.8:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.536G>A
  hgvsp: ENSP00000385665.2:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1104G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12650
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg179Gln
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

5-176081980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081980
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081980
    reference: chr 5
allele count: 3
allele frequency: 3.418335954057565e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.541C>T
  hgvsp: ENSP00000426650.1:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1099C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.541C>T
  hgvsp: ENSP00000385665.2:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2641C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.541C>T
  hgvsp: ENSP00000422053.1:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.541C>T
  hgvsp: ENSP00000309036.8:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1099C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.505C>T
  hgvsp: ENSP00000423957.1:p.Arg169Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.472C>T
  hgvsp: ENSP00000425212.1:p.Arg158Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.339C>T
  hgvsp: ENSP00000423610.1:p.Arg114Cys
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg181Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

5-176081985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081985
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081985
    reference: chr 5
allele count: 24
allele frequency: 2.824925257185904e-4
allele num: 84958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.546C>T
  hgvsp: ENST00000310032.8:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.546C>T
  hgvsp: ENST00000405525.2:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.477C>T
  hgvsp: ENST00000503045.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1094C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.546C>T
  hgvsp: ENST00000508164.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1094C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.344C>T
  hgvsp: ENST00000507471.1:c.344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.510C>T
  hgvsp: ENST00000504168.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.546C>T
  hgvsp: ENST00000515708.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2646C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16694
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11499
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys182Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

5-176081986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081986
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081986
    reference: chr 5
allele count: 10
allele frequency: 1.187789523696401e-4
allele num: 84190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.511G>A
  hgvsp: ENSP00000423957.1:p.Gly171Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.345G>A
  hgvsp: ENSP00000423610.1:p.Gly116Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.478G>A
  hgvsp: ENSP00000425212.1:p.Gly160Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.547G>A
  hgvsp: ENSP00000385665.2:p.Gly183Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1093G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.547G>A
  hgvsp: ENSP00000422053.1:p.Gly183Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.547G>A
  hgvsp: ENSP00000309036.8:p.Gly183Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.547G>A
  hgvsp: ENSP00000426650.1:p.Gly183Arg
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2647G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1093G>A
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11358
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15490
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17013
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly183Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

5-176081989-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081989
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081989
    reference: chr 5
allele count: 1
allele frequency: 1.209862801558303e-5
allele num: 82654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.514G>C
  hgvsp: ENSP00000423957.1:p.Val172Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.550G>C
  hgvsp: ENSP00000309036.8:p.Val184Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.550G>C
  hgvsp: ENSP00000426650.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.550G>C
  hgvsp: ENSP00000422053.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.481G>C
  hgvsp: ENSP00000425212.1:p.Val161Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2650G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.550G>C
  hgvsp: ENSP00000385665.2:p.Val184Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.348G>C
  hgvsp: ENSP00000423610.1:p.Val117Leu
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1090G>C
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1090G>C
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val184Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-176081996-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081996
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081993
    reference: chr 5
allele count: 1
allele frequency: 1.271973339438805e-5
allele num: 78618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.560_562delCCT
  hgvsp: ENSP00000426650.1:p.Ser187del
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.560_562delCCT
  hgvsp: ENSP00000309036.8:p.Ser187del
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.560_562delCCT
  hgvsp: ENSP00000422053.1:p.Ser187del
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2660_2662delCCT
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.358_360delCCT
  hgvsp: ENSP00000423610.1:p.Ser120del
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1080_259-1078delCCT
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.491_493delCCT
  hgvsp: ENSP00000425212.1:p.Ser164del
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.524_526delCCT
  hgvsp: ENSP00000423957.1:p.Ser175del
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1080_*291-1078delCCT
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.560_562delCCT
  hgvsp: ENSP00000385665.2:p.Ser187del
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13568
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser187del
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: TCTC
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

5-176081999-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176081999
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176081999
    reference: chr 5
allele count: 1
allele frequency: 1.304835721182703e-5
allele num: 76638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2660C>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.358C>G
  hgvsp: ENSP00000423610.1:p.Ser120Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.491C>G
  hgvsp: ENSP00000425212.1:p.Ser164Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.560C>G
  hgvsp: ENSP00000385665.2:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.560C>G
  hgvsp: ENSP00000422053.1:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.560C>G
  hgvsp: ENSP00000309036.8:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1080C>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.524C>G
  hgvsp: ENSP00000423957.1:p.Ser175Cys
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1080C>G
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.560C>G
  hgvsp: ENSP00000426650.1:p.Ser187Cys
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser187Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-176082002-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176082002
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176082002
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 74890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.563G>T
  hgvsp: ENSP00000385665.2:p.Cys188Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.563G>T
  hgvsp: ENSP00000422053.1:p.Cys188Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.563G>T
  hgvsp: ENSP00000309036.8:p.Cys188Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.563G>T
  hgvsp: ENSP00000426650.1:p.Cys188Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.361G>T
  hgvsp: ENSP00000423610.1:p.Cys121Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2663G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1077G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.527G>T
  hgvsp: ENSP00000423957.1:p.Cys176Phe
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1077G>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.494G>T
  hgvsp: ENSP00000425212.1:p.Cys165Phe
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20631
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys188Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

5-176082006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176082006
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176082006
    reference: chr 5
allele count: 14
allele frequency: 1.92789666473877e-4
allele num: 72618
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.567C>T
  hgvsp: ENST00000310032.8:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.498C>T
  hgvsp: ENST00000503045.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1073C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.567C>T
  hgvsp: ENST00000405525.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.567C>T
  hgvsp: ENST00000508164.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.365C>T
  hgvsp: ENST00000507471.1:c.365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2667C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.567C>T
  hgvsp: ENST00000515708.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.531C>T
  hgvsp: ENST00000504168.1:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1073C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21372
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17710
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys189Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

5-176082014-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176082014
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176082014
    reference: chr 5
allele count: 1
allele frequency: 1.465158530152963e-5
allele num: 68252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.373A>T
  hgvsp: ENSP00000423610.1:p.Asp125Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.575A>T
  hgvsp: ENSP00000422053.1:p.Asp192Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.575A>T
  hgvsp: ENSP00000309036.8:p.Asp192Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1065A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.539A>T
  hgvsp: ENSP00000423957.1:p.Asp180Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.506A>T
  hgvsp: ENSP00000425212.1:p.Asp169Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1065A>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.575A>T
  hgvsp: ENSP00000385665.2:p.Asp192Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.575A>T
  hgvsp: ENSP00000426650.1:p.Asp192Val
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2675A>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp192Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

5-176082015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176082015
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176082015
    reference: chr 5
allele count: 2
allele frequency: 2.94386057876299e-5
allele num: 67938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.576C>T
  hgvsp: ENST00000405525.2:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.576C>T
  hgvsp: ENST00000515708.1:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.576C>T
  hgvsp: ENST00000508164.1:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1064C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.507C>T
  hgvsp: ENST00000503045.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2676C>T
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.374C>T
  hgvsp: ENST00000507471.1:c.374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.540C>T
  hgvsp: ENST00000504168.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.576C>T
  hgvsp: ENST00000310032.8:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1064C>T
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18035
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9261
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp192Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

5-176082021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176082021
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176082021
    reference: chr 5
allele count: 2
allele frequency: 3.144555202666583e-5
allele num: 63602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1058G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.582G>A
  hgvsp: ENST00000405525.2:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1058G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.380G>A
  hgvsp: ENST00000507471.1:c.380G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.582G>A
  hgvsp: ENST00000515708.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.513G>A
  hgvsp: ENST00000503045.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2682G>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.582G>A
  hgvsp: ENST00000310032.8:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.582G>A
  hgvsp: ENST00000508164.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.546G>A
  hgvsp: ENST00000504168.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18148
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.582G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/5-176082032-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 176082032
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 176082032
    reference: chr 5
allele count: 1
allele frequency: 1.742706772158517e-5
allele num: 57382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000298564
  ensembl transcript: ENST00000298564
  gene symbol: TSPAN17
  hgvsc: ENST00000298564.10:c.259-1047C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000309036
  ensembl transcript: ENST00000310032
  gene symbol: TSPAN17
  hgvsc: ENST00000310032.8:c.582+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl transcript: ENST00000514705
  gene symbol: TSPAN17
  hgvsc: ENST00000514705.1:n.2682+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000426650
  ensembl transcript: ENST00000515708
  gene symbol: TSPAN17
  hgvsc: ENST00000515708.1:c.582+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000422053
  ensembl transcript: ENST00000508164
  gene symbol: TSPAN17
  hgvsc: ENST00000508164.1:c.582+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423957
  ensembl transcript: ENST00000504168
  gene symbol: TSPAN17
  hgvsc: ENST00000504168.1:c.546+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425212
  ensembl transcript: ENST00000503045
  gene symbol: TSPAN17
  hgvsc: ENST00000503045.1:c.513+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000423610
  ensembl transcript: ENST00000507471
  gene symbol: TSPAN17
  hgvsc: ENST00000507471.1:c.380+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000385665
  ensembl transcript: ENST00000405525
  gene symbol: TSPAN17
  hgvsc: ENST00000405525.2:c.582+11C>A
  variant of: http://identifiers.org/hgnc/13594
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048140
  ensembl protein: ENSP00000425975
  ensembl transcript: ENST00000503030
  gene symbol: TSPAN17
  hgvsc: ENST00000503030.1:c.*291-1047C>A
  variant of: http://identifiers.org/hgnc/13594
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45052
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.532199e6

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.842e0

FS
type: SiteQuality
SIO_000300: 3.428e0

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45053
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

DP
type: SiteQuality
SIO_000300: 3.532192e6

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45052
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

FS
type: SiteQuality
SIO_000300: 5.048e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.204e-1

DP
type: SiteQuality
SIO_000300: 3.532256e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.106e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.134e0

QD
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SIO_000300: 4.02e0

MQRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
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SIO_000300: 5.915e1

ClippingRankSum
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SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.422e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 3.532156e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 1.684e-1

QD
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SIO_000300: 1.289e1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.531977e6

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.201e1

FS
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6924
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.285e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

DP
type: SiteQuality
SIO_000300: 3.53215e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

FS
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 3.53215e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.53186e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ReadPosRankSum
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SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 1.296e1

VQSLOD
type: SiteQuality
SIO_000300: -1.565e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.814e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.681e0

DP
type: SiteQuality
SIO_000300: 3.531767e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.089e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 2.785e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1357

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1117
allele frequency: 1.673759290338048e-2
allele num: 66736
num of homozygotes: 13

African
type: Population
allele count: 24
allele frequency: 2.306361714395541e-3
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 38
allele frequency: 3.28208671618587e-3
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 101
allele frequency: 1.527063804052011e-2
allele num: 6614
num of homozygotes: 3

Other
type: Population
allele count: 7
allele frequency: 7.709251101321586e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 88
allele frequency: 5.329457364341085e-3
allele num: 16512
num of homozygotes: 3

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

DP
type: SiteQuality
SIO_000300: 3.695606e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 1693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 3.49975e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.691e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

DP
type: SiteQuality
SIO_000300: 3.499705e6

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

FS
type: SiteQuality
SIO_000300: 2.079e0

QD
type: SiteQuality
SIO_000300: 1.143e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 5.406e0

DP
type: SiteQuality
SIO_000300: 3.499175e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.194e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 7.346e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.417e0

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

DP
type: SiteQuality
SIO_000300: 3.498887e6

GenotypeQuality
all individuals: 1676
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.987e0

VQSLOD
type: SiteQuality
SIO_000300: -1.366e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
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DP
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SIO_000300: 3.498534e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.003e0

BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.49789e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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SIO_000300: -5.15e-1

FS
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
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SIO_000300: 3.7e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1664
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 16
allele frequency: 1.537574476263694e-3
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

FS
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DP
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QD
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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QD
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.217e0

MQ
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DP
type: SiteQuality
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FS
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BaseQRankSum
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SIO_000300: 5.29e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.526e1

MQRankSum
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SIO_000300: -1.25e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.457e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
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SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 3.473538e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 3.47072e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele frequency: 8.527994067482388e-3
allele num: 16182
num of homozygotes: 3

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.849855630413859e-4
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

InbreedingCoeff
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MQ
type: SiteQuality
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 4.942542938341777e-4
allele num: 16186
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East Asian
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allele frequency: 5.107713690062544e-2
allele num: 8634
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Other
type: Population
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allele frequency: 1.106194690265487e-2
allele num: 904
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European (Non-Finnish)
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allele frequency: 7.514277126540426e-5
allele num: 66540
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African
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Latino
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allele num: 11578
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European (Finnish)
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InbreedingCoeff
type: SiteQuality
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QD
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.203473945409429e-5
allele num: 16120
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

African
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Other
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East Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
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DP
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 824
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.998e0

DP
type: SiteQuality
SIO_000300: 3.443591e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 5946
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7012
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6825
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648804616652927e-5
allele num: 60650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

DP
type: SiteQuality
SIO_000300: 1.206341e6

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

QD
type: SiteQuality
SIO_000300: 1.493e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 1224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2887
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4539
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648804616652927e-5
allele num: 60650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.493e1

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.206341e6

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 452
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variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6864
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13570
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 7.612456747404844e-4
allele num: 14450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.146e1

VQSLOD
type: SiteQuality
SIO_000300: 5.02e0

DP
type: SiteQuality
SIO_000300: 1.229499e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeQuality
all individuals: 1990
bin: 5.75e1
variant carriers: 1946

GenotypeQuality
all individuals: 254
bin: 7.5e0
variant carriers: 199

GenotypeQuality
all individuals: 304
bin: 1.25e1
variant carriers: 260

GenotypeQuality
all individuals: 2198
bin: 3.25e1
variant carriers: 1904

GenotypeQuality
all individuals: 5514
bin: 6.25e1
variant carriers: 3744

GenotypeQuality
all individuals: 634
bin: 1.75e1
variant carriers: 593

GenotypeQuality
all individuals: 556
bin: 2.5e0
variant carriers: 140

GenotypeQuality
all individuals: 1568
bin: 7.25e1
variant carriers: 1513

GenotypeQuality
all individuals: 1743
bin: 4.25e1
variant carriers: 1558

GenotypeQuality
all individuals: 982
bin: 8.75e1
variant carriers: 975

GenotypeQuality
all individuals: 3782
bin: 4.75e1
variant carriers: 3556

GenotypeQuality
all individuals: 2876
bin: 3.75e1
variant carriers: 2542

GenotypeQuality
all individuals: 3862
bin: 5.25e1
variant carriers: 3755

GenotypeQuality
all individuals: 22611
bin: 9.75e1
variant carriers: 22564

GenotypeQuality
all individuals: 2019
bin: 8.25e1
variant carriers: 1998

GenotypeQuality
all individuals: 3516
bin: 6.75e1
variant carriers: 3235

GenotypeQuality
all individuals: 970
bin: 2.75e1
variant carriers: 784

African
type: Population
allele count: 7003
allele frequency: 7.296311731610752e-1
allele num: 9598
num of homozygotes: 2519

European (Finnish)
type: Population
allele count: 5033
allele frequency: 8.458823529411764e-1
allele num: 5950
num of homozygotes: 2127

European (Non-Finnish)
type: Population
allele count: 53497
allele frequency: 8.499682237051159e-1
allele num: 62940
num of homozygotes: 22665

East Asian
type: Population
allele count: 3604
allele frequency: 4.430784361937546e-1
allele num: 8134
num of homozygotes: 758

Latino
type: Population
allele count: 7531
allele frequency: 6.961545572194491e-1
allele num: 10818
num of homozygotes: 2628

South Asian
type: Population
allele count: 9900
allele frequency: 6.501182033096927e-1
allele num: 15228
num of homozygotes: 3247

Other
type: Population
allele count: 658
allele frequency: 7.908653846153846e-1
allele num: 832
num of homozygotes: 264

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.71e0

FS
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 2.839e1

DP
type: SiteQuality
SIO_000300: 1.38987e6

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27613
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4967
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3550
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 2127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.820167455405897e-4
allele num: 10988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 5.062169772518746e-4
allele num: 63214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.30718954248366e-4
allele num: 15300
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.736714136853074e-4
allele num: 5758
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.025e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

DP
type: SiteQuality
SIO_000300: 1.328404e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.219e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 4312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
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GenotypeQuality
all individuals: 2183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
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variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
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GenotypeQuality
all individuals: 153
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.051524710830704e-4
allele num: 9510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63200
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.337596e6

FS
type: SiteQuality
SIO_000300: 4.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.466e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 5205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578033769922677e-5
allele num: 63370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11038
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.367505e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.355e0

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -4.424e0

QD
type: SiteQuality
SIO_000300: 7.97e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

GenotypeQuality
all individuals: 1829
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15404
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.424083769633508e-4
allele num: 9550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.372184e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.803e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578432301038608e-5
allele num: 63354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15430
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.381085e6

VQSLOD
type: SiteQuality
SIO_000300: -1.388e0

FS
type: SiteQuality
SIO_000300: 7.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 6.51e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189909566872918e-4
allele num: 8404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.385875e6

MQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: -3.096e-1

QD
type: SiteQuality
SIO_000300: 2.386e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1969
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57425773747678e-5
allele num: 63522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11058
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.783e0

FS
type: SiteQuality
SIO_000300: 5.121e0

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

DP
type: SiteQuality
SIO_000300: 1.402824e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 1.242e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1835
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.066969822240595e-4
allele num: 9676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 5.55e0

VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.432031e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
all individuals: 503
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2049
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variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.996041741633681e-5
allele num: 11116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63990
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.26e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.442935e6

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 881
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15726
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.989572096368213e-5
allele num: 11124
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 3.771e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.766e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.45091e6

QD
type: SiteQuality
SIO_000300: 9.02e0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 55

GenotypeQuality
all individuals: 461
bin: 5.75e1
variant carriers: 190

GenotypeQuality
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bin: 7.75e1
variant carriers: 332

GenotypeQuality
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GenotypeQuality
all individuals: 478
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 158

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 198

GenotypeQuality
all individuals: 848
bin: 7.25e1
variant carriers: 182

GenotypeQuality
all individuals: 3230
bin: 6.75e1
variant carriers: 284

European (Non-Finnish)
type: Population
allele count: 16565
allele frequency: 2.553883629860319e-1
allele num: 64862
num of homozygotes: 2018

European (Finnish)
type: Population
allele count: 1614
allele frequency: 2.679282868525896e-1
allele num: 6024
num of homozygotes: 198

African
type: Population
allele count: 484
allele frequency: 4.966139954853273e-2
allele num: 9746
num of homozygotes: 24

Other
type: Population
allele count: 244
allele frequency: 2.811059907834101e-1
allele num: 868
num of homozygotes: 31

Latino
type: Population
allele count: 1407
allele frequency: 1.256698821007503e-1
allele num: 11196
num of homozygotes: 95

South Asian
type: Population
allele count: 4871
allele frequency: 3.036404438349333e-1
allele num: 16042
num of homozygotes: 760

East Asian
type: Population
allele count: 3685
allele frequency: 4.348595704507907e-1
allele num: 8474
num of homozygotes: 779

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.74687e6

QD
type: SiteQuality
SIO_000300: 1.43e1

GenotypeQuality
all individuals: 733
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 2.25e1
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 551
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GenotypeQuality
all individuals: 1413
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GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.75e1
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GenotypeQuality
all individuals: 929
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5843
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.545261167572678e-4
allele num: 8462
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.698812522490104e-4
allele num: 11116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.076e0

FS
type: SiteQuality
SIO_000300: 2.301e0

QD
type: SiteQuality
SIO_000300: 1.11e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.457895e6

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564406620568818e-5
allele num: 63922
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.012256669069935e-5
allele num: 11096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 1.457126e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

FS
type: SiteQuality
SIO_000300: 4.163e0

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeQuality
all individuals: 43006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 176
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 225
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 568
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GenotypeQuality
all individuals: 5736
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variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565092183929633e-5
allele num: 63894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.456185e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

QD
type: SiteQuality
SIO_000300: 3.028e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 4.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 1259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189343482397717e-4
allele num: 8408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.448e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.451293e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.921e1

VQSLOD
type: SiteQuality
SIO_000300: -6.601e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 2.742e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
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variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5623
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variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 384
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.068252326783868e-4
allele num: 9670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.196e-1

DP
type: SiteQuality
SIO_000300: 1.448032e6

QD
type: SiteQuality
SIO_000300: 3.132e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 5558
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variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 9.75e1
variant carriers: 105

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 42616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 81
allele frequency: 8.395522388059701e-3
allele num: 9648
num of homozygotes: 1

Latino
type: Population
allele count: 7
allele frequency: 6.331403762662807e-4
allele num: 11056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.258811681772407e-4
allele num: 63552
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.968011458582001e-4
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.844675124951942e-4
allele num: 15606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444799e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

GenotypeQuality
all individuals: 42085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 879
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variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.25e1
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GenotypeQuality
all individuals: 578
bin: 5.25e1
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GenotypeQuality
all individuals: 1060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584434515321482e-5
allele num: 63114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

QD
type: SiteQuality
SIO_000300: 8.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

FS
type: SiteQuality
SIO_000300: 1.5639e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.213e0

VQSLOD
type: SiteQuality
SIO_000300: -2.305e0

DP
type: SiteQuality
SIO_000300: 1.43152e6

GenotypeQuality
all individuals: 42006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5411
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
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variant carriers: 0

GenotypeQuality
all individuals: 5701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.092487968194183e-4
allele num: 9558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
type: SiteQuality
SIO_000300: 1.408e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

DP
type: SiteQuality
SIO_000300: 1.428419e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586898565443697e-5
allele num: 63016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

FS
type: SiteQuality
SIO_000300: 1.408e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.428419e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595354328196292e-5
allele num: 62682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.172e0

DP
type: SiteQuality
SIO_000300: 1.419856e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.61e-1

ReadPosRankSum
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SIO_000300: -6.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.322e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
all individuals: 830
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.572029442691903e-5
allele num: 15216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.381844e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 8.939e0

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.285016705217168e-4
allele num: 7782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.323498e6

MQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

QD
type: SiteQuality
SIO_000300: 1.627e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 5.653e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -3.314e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821228236322576e-5
allele num: 54908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7178
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.427e1

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.207557e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51858
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.439884809215263e-4
allele num: 13890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 696
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European (Finnish)
type: Population
allele count: 1
allele frequency: 2.414292612264606e-4
allele num: 4142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.988354006301599e-5
allele num: 50146
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2074e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.5e-3

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085766727849157e-5
allele num: 47944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.607561929595828e-4
allele num: 7670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.027432e6

VQSLOD
type: SiteQuality
SIO_000300: -5.735e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.43e-1

FS
type: SiteQuality
SIO_000300: 3.081e0

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 1139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 921
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 16774
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variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 22

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.529987760097919e-4
allele num: 13072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 4.746698886683352e-4
allele num: 46348
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 9.93358e5

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

FS
type: SiteQuality
SIO_000300: 2.049e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 1.133e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3054
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 700
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.960698880223084e-4
allele num: 45902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.745744096650192e-4
allele num: 3642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.133e0

QD
type: SiteQuality
SIO_000300: 9.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 9.85301e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeQuality
all individuals: 698
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.222123461179503e-5
allele num: 45002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.81e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.661e0

DP
type: SiteQuality
SIO_000300: 9.64681e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeQuality
all individuals: 577
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.5e0
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GenotypeQuality
all individuals: 988
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 3265
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variant carriers: 0

GenotypeQuality
all individuals: 29634
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variant carriers: 0

GenotypeQuality
all individuals: 1568
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variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
all individuals: 1746
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GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 1829
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variant carriers: 0

GenotypeQuality
all individuals: 347
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GenotypeQuality
all individuals: 842
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variant carriers: 1

GenotypeQuality
all individuals: 693
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.339619110008891e-5
allele num: 42742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

QD
type: SiteQuality
SIO_000300: 8.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 9.18294e5

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
all individuals: 699
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
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variant carriers: 0

GenotypeQuality
all individuals: 12235
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variant carriers: 0

GenotypeQuality
all individuals: 227
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 782
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GenotypeQuality
all individuals: 1144
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1979
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GenotypeQuality
all individuals: 840
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.405002405002405e-5
allele num: 41580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 1.395e1

DP
type: SiteQuality
SIO_000300: 8.97485e5

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 8.8142e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.636696874045413e-5
allele num: 39284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.591343093570974e-4
allele num: 6284
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.529051987767584e-3
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 5.177e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 8.60359e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

QD
type: SiteQuality
SIO_000300: 1.003e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.637733377006223e-4
allele num: 6106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.128e1

DP
type: SiteQuality
SIO_000300: 8.17797e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

GenotypeQuality
all individuals: 400
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33002
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.455537370430988e-5
allele num: 36660
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 2.433e0

DP
type: SiteQuality
SIO_000300: 8.12803e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

GenotypeQuality
all individuals: 832
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 436
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4723
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.844876965339879e-5
allele num: 34218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

DP
type: SiteQuality
SIO_000300: 7.7529e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

QD
type: SiteQuality
SIO_000300: 5.79e0