7-31609442-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609442
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31609442
    reference: chr 7
allele count: 3
allele frequency: 7.962628729164455e-5
allele num: 37676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.308+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.308+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.308+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.32+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.386+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.308+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.308+19G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.507+19G>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

7-31609449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609449
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31609449
    reference: chr 7
allele count: 1
allele frequency: 2.70914607715648e-5
allele num: 36912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.308+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.308+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.507+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.308+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.386+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.32+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.308+26C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.308+26C>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25518
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21475
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

7-31609456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609456
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31609456
    reference: chr 7
allele count: 782
allele frequency: 2.181919642857143e-2
allele num: 35840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.308+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.308+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.507+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.386+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.308+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.32+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.308+33A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.308+33A>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24754
  bin: 7.5e0
  variant carriers: 629
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 9.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 1.25e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 16640
  bin: 2.5e0
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16877
  bin: 2.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 2.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 1.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 63
num of homozygotes: 11
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-31609457-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609457
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31609457
    reference: chr 7
allele count: 1
allele frequency: 2.826615410707219e-5
allele num: 35378
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.386+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.308+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.32+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.308+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.308+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.308+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.507+34T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.308+34T>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16874
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5096
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17919
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-31609463-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609463
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31609463
    reference: chr 7
allele count: 17
allele frequency: 4.991778247592201e-4
allele num: 34056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.507+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.308+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.308+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.308+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.386+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.308+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.32+40G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.308+40G>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24806
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-31609466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609466
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31609466
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 35104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.386+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.308+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.308+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.32+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.308+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.507+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.308+43G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.308+43G>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24824
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6178
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5152
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-31611669-ACTAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611669
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611665
    reference: chr 7
allele count: 105
allele frequency: 1.277310106564157e-3
allele num: 82204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-43_508-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-43_387-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-43_309-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-43_309-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-43_309-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-43_309-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-43_33-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-43_309-40delTCTA
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18984
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16556
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3462
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4619
  bin: 9.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 12588
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: ACTAT
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

7-31611671-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611671
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611671
    reference: chr 7
allele count: 1
allele frequency: 1.213621689846841e-5
allele num: 82398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-45T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-45T>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13502
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-31611675-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611675
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611675
    reference: chr 7
allele count: 1
allele frequency: 1.206825806763052e-5
allele num: 82862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-41T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-41T>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

7-31611683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611683
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611683
    reference: chr 7
allele count: 1
allele frequency: 1.193118094829026e-5
allele num: 83814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-33C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-33C>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-31611687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611687
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611687
    reference: chr 7
allele count: 3
allele frequency: 3.523690948812516e-5
allele num: 85138
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-29T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-29T>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15781
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

7-31611698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611698
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611698
    reference: chr 7
allele count: 1
allele frequency: 1.11000111000111e-5
allele num: 90090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-18A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-18A>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14959
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-31611704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611704
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611704
    reference: chr 7
allele count: 1
allele frequency: 1.069221392981631e-5
allele num: 93526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-12T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-12T>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13574
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-31611709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611709
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611709
    reference: chr 7
allele count: 61
allele frequency: 6.267853106183596e-4
allele num: 97322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.309-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.33-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.508-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.309-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.387-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.309-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.309-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.309-7A>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28928
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11561
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4615
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.75e1
  variant carriers: 1
hgvs: c.387-7A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-31611739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611739
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611739
    reference: chr 7
allele count: 3
allele frequency: 2.733136547501913e-5
allele num: 109764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.332C>T
  hgvsp: ENSP00000387220.1:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.56C>T
  hgvsp: ENSP00000387214.1:p.Thr19Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.332C>T
  hgvsp: ENSP00000390544.1:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.410C>T
  hgvsp: ENSP00000395835.2:p.Thr137Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.332C>T
  hgvsp: ENSP00000413233.1:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.332C>T
  hgvsp: ENSP00000384416.3:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.332C>T
  hgvsp: ENSP00000313062.3:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.531C>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5983
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr137Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/7-31611742-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611742
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611742
    reference: chr 7
allele count: 1
allele frequency: 9.074739554974772e-6
allele num: 110196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.335C>A
  hgvsp: ENSP00000390544.1:p.Pro112His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.335C>A
  hgvsp: ENSP00000384416.3:p.Pro112His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.59C>A
  hgvsp: ENSP00000387214.1:p.Pro20His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.335C>A
  hgvsp: ENSP00000313062.3:p.Pro112His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.335C>A
  hgvsp: ENSP00000387220.1:p.Pro112His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.413C>A
  hgvsp: ENSP00000395835.2:p.Pro138His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.534C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.335C>A
  hgvsp: ENSP00000413233.1:p.Pro112His
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36154
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro138His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

7-31611758-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611758
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611758
    reference: chr 7
allele count: 51412
allele frequency: 4.394864167136824e-1
allele num: 116982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.351G>T
  hgvsp: ENST00000319386.3:c.351G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.351G>T
  hgvsp: ENST00000407970.3:c.351G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.351G>T
  hgvsp: ENST00000456011.1:c.351G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.550G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.429G>T
  hgvsp: ENST00000451887.2:c.429G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.351G>T
  hgvsp: ENST00000454513.1:c.351G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.351G>T
  hgvsp: ENST00000409717.1:c.351G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.75G>T
  hgvsp: ENST00000409210.1:c.75G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.75e1
  variant carriers: 592
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 3.25e1
  variant carriers: 5684
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 9.75e1
  variant carriers: 2804
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 16962
  bin: 2.25e1
  variant carriers: 5088
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.25e1
  variant carriers: 1511
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.25e1
  variant carriers: 1264
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.5e0
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.25e1
  variant carriers: 701
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.75e1
  variant carriers: 3102
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 784
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 4.75e1
  variant carriers: 1985
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 3068
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.25e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 3.75e1
  variant carriers: 4522
genotype depth: GenotypeDepth
  all individuals: 9339
  bin: 2.75e1
  variant carriers: 6178
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 927
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.75e1
  variant carriers: 1212
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.75e1
  variant carriers: 278
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 245
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.25e1
  variant carriers: 714
hgvs: p.Gly143Gly
num of homozygotes: 11198
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-31611759-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611759
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611759
    reference: chr 7
allele count: 1
allele frequency: 8.893632159373889e-6
allele num: 112440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.352A>C
  hgvsp: ENSP00000390544.1:p.Thr118Pro
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.352A>C
  hgvsp: ENSP00000413233.1:p.Thr118Pro
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.551A>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.430A>C
  hgvsp: ENSP00000395835.2:p.Thr144Pro
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.352A>C
  hgvsp: ENSP00000387220.1:p.Thr118Pro
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.76A>C
  hgvsp: ENSP00000387214.1:p.Thr26Pro
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.352A>C
  hgvsp: ENSP00000313062.3:p.Thr118Pro
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.352A>C
  hgvsp: ENSP00000384416.3:p.Thr118Pro
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23541
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr144Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

7-31611761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611761
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611761
    reference: chr 7
allele count: 38
allele frequency: 3.379880814729165e-4
allele num: 112430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.354C>T
  hgvsp: ENST00000454513.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.354C>T
  hgvsp: ENST00000319386.3:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.354C>T
  hgvsp: ENST00000456011.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.354C>T
  hgvsp: ENST00000409717.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.354C>T
  hgvsp: ENST00000407970.3:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.432C>T
  hgvsp: ENST00000451887.2:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.78C>T
  hgvsp: ENST00000409210.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.553C>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23648
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18500
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr144Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/7-31611762-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611762
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611762
    reference: chr 7
allele count: 4
allele frequency: 3.56245880907002e-5
allele num: 112282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.433A>C
  hgvsp: ENSP00000395835.2:p.Ser145Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.355A>C
  hgvsp: ENSP00000313062.3:p.Ser119Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.355A>C
  hgvsp: ENSP00000387220.1:p.Ser119Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.355A>C
  hgvsp: ENSP00000384416.3:p.Ser119Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.355A>C
  hgvsp: ENSP00000413233.1:p.Ser119Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.79A>C
  hgvsp: ENSP00000387214.1:p.Ser27Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.355A>C
  hgvsp: ENSP00000390544.1:p.Ser119Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.554A>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6626
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser145Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-31611763-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611763
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611763
    reference: chr 7
allele count: 1
allele frequency: 8.91774274095741e-6
allele num: 112136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.80G>C
  hgvsp: ENSP00000387214.1:p.Ser27Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.434G>C
  hgvsp: ENSP00000395835.2:p.Ser145Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.356G>C
  hgvsp: ENSP00000413233.1:p.Ser119Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.356G>C
  hgvsp: ENSP00000387220.1:p.Ser119Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.356G>C
  hgvsp: ENSP00000390544.1:p.Ser119Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.555G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.356G>C
  hgvsp: ENSP00000313062.3:p.Ser119Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.356G>C
  hgvsp: ENSP00000384416.3:p.Ser119Thr
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser145Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

7-31611767-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611767
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611767
    reference: chr 7
allele count: 2
allele frequency: 1.796590072043262e-5
allele num: 111322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.360C>G
  hgvsp: ENSP00000313062.3:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.360C>G
  hgvsp: ENSP00000413233.1:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.438C>G
  hgvsp: ENSP00000395835.2:p.Phe146Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.360C>G
  hgvsp: ENSP00000384416.3:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.360C>G
  hgvsp: ENSP00000387220.1:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.84C>G
  hgvsp: ENSP00000387214.1:p.Phe28Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.559C>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.360C>G
  hgvsp: ENSP00000390544.1:p.Phe120Leu
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18082
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe146Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-31611769-A-ACAGAACAGAAGCAATTAAAGGACAGGGCCCAGCTATTGTTTTTTTTTGTTTGTTTGTTTGTTTTTGAGACAGAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611769
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611844
    reference: chr 7
allele count: 1
allele frequency: 9.004466215242761e-6
allele num: 111056
alternate allele: ACAGAACAGAAGCAATTAAAGGACAGGGCCCAGCTATTGTTTTTTTTTGTTTGTTTGTTTGTTTTTGAGACAGAGT
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: inframe_insertion
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7789
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3808
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

7-31611781-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611781
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611781
    reference: chr 7
allele count: 1
allele frequency: 9.276265746461104e-6
allele num: 107802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.374C>G
  hgvsp: ENSP00000313062.3:p.Ser125Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.374C>G
  hgvsp: ENSP00000390544.1:p.Ser125Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.374C>G
  hgvsp: ENSP00000387220.1:p.Ser125Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.374C>G
  hgvsp: ENSP00000413233.1:p.Ser125Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.374C>G
  hgvsp: ENSP00000384416.3:p.Ser125Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.573C>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.98C>G
  hgvsp: ENSP00000387214.1:p.Ser33Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.452C>G
  hgvsp: ENSP00000395835.2:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33988
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser151Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-31611783-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611783
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611783
    reference: chr 7
allele count: 1
allele frequency: 9.32001192961527e-6
allele num: 107296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.575A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.376A>G
  hgvsp: ENSP00000384416.3:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.376A>G
  hgvsp: ENSP00000313062.3:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.376A>G
  hgvsp: ENSP00000413233.1:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.376A>G
  hgvsp: ENSP00000387220.1:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.100A>G
  hgvsp: ENSP00000387214.1:p.Thr34Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.376A>G
  hgvsp: ENSP00000390544.1:p.Thr126Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.454A>G
  hgvsp: ENSP00000395835.2:p.Thr152Ala
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16255
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr152Ala
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-31611792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611792
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611792
    reference: chr 7
allele count: 1
allele frequency: 9.652509652509653e-6
allele num: 103600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.385G>A
  hgvsp: ENSP00000387220.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.109G>A
  hgvsp: ENSP00000387214.1:p.Val37Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.385G>A
  hgvsp: ENSP00000413233.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.385G>A
  hgvsp: ENSP00000390544.1:p.Val129Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.385G>A
  hgvsp: ENSP00000313062.3:p.Val129Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.385G>A
  hgvsp: ENSP00000384416.3:p.Val129Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.463G>A
  hgvsp: ENSP00000395835.2:p.Val155Ile
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.584G>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val155Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

7-31611794-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611794
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611794
    reference: chr 7
allele count: 1
allele frequency: 9.696123489828767e-6
allele num: 103134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.387A>G
  hgvsp: ENST00000409717.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.387A>G
  hgvsp: ENST00000319386.3:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.586A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.387A>G
  hgvsp: ENST00000454513.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.465A>G
  hgvsp: ENST00000451887.2:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.111A>G
  hgvsp: ENST00000409210.1:c.111A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.387A>G
  hgvsp: ENST00000407970.3:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.387A>G
  hgvsp: ENST00000456011.1:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14326
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val155Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-31611802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611802
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611802
    reference: chr 7
allele count: 1
allele frequency: 1.006157685032398e-5
allele num: 99388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.395G>A
  hgvsp: ENSP00000313062.3:p.Ser132Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.594G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.395G>A
  hgvsp: ENSP00000390544.1:p.Ser132Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.395G>A
  hgvsp: ENSP00000413233.1:p.Ser132Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.395G>A
  hgvsp: ENSP00000387220.1:p.Ser132Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.395G>A
  hgvsp: ENSP00000384416.3:p.Ser132Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.473G>A
  hgvsp: ENSP00000395835.2:p.Ser158Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.119G>A
  hgvsp: ENSP00000387214.1:p.Ser40Asn
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19209
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser158Asn
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

7-31611811-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611811
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611811
    reference: chr 7
allele count: 4
allele frequency: 4.208045783538125e-5
allele num: 95056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.395+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.395+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.473+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.395+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.395+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.594+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.395+9T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.119+9T>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18269
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-31611818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611818
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611818
    reference: chr 7
allele count: 4
allele frequency: 4.36005319264895e-5
allele num: 91742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.395+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.473+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.395+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.594+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.395+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.119+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.395+16G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.395+16G>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12735
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20896
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24903
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

7-31611832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611832
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611832
    reference: chr 7
allele count: 3
allele frequency: 3.5573684959446e-5
allele num: 84332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.119+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.473+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.395+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.395+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.395+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.395+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.395+30G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.594+30G>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21624
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-31611837-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611837
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611837
    reference: chr 7
allele count: 4
allele frequency: 4.857316332726169e-5
allele num: 82350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.395+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.119+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.473+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.395+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.395+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.395+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.395+35A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.594+35A>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15473
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-31611848-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31611848
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31611848
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 74230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.395+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.395+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.395+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.395+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.119+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.594+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.473+46C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.395+46C>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18630
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-31614111-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614111
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614111
    reference: chr 7
allele count: 1
allele frequency: 8.370862701109976e-6
allele num: 119462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-43G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-43G>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

7-31614114-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614114
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614114
    reference: chr 7
allele count: 3
allele frequency: 2.509326329524733e-5
allele num: 119554
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-40A>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-40A>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

7-31614117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614117
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614117
    reference: chr 7
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-37T>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-37T>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

7-31614119-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614119
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614119
    reference: chr 7
allele count: 1
allele frequency: 8.356871855726965e-6
allele num: 119662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-35T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-35T>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

7-31614125-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614125
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614125
    reference: chr 7
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-29G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-29G>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

7-31614138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614138
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614138
    reference: chr 7
allele count: 1
allele frequency: 8.300683976359652e-6
allele num: 120472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-16A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-16A>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-31614140-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614140
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614141
    reference: chr 7
allele count: 8
allele frequency: 6.635700066357e-5
allele num: 120560
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-8dupT
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-8dupT
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-31614142-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614142
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614142
    reference: chr 7
allele count: 1
allele frequency: 8.28775070445881e-6
allele num: 120660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-12T>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-12T>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

7-31614147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614147
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614147
    reference: chr 7
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396-7A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396-7A>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: c.474-7A>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

7-31614154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614154
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614154
    reference: chr 7
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.396C>T
  hgvsp: ENST00000409717.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.396C>T
  hgvsp: ENST00000407970.3:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.396C>T
  hgvsp: ENST00000454513.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.595C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.396C>T
  hgvsp: ENST00000319386.3:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.474C>T
  hgvsp: ENST00000451887.2:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.396C>T
  hgvsp: ENST00000456011.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.120C>T
  hgvsp: ENST00000409210.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: c.474C>T
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-31614155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614155
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614155
    reference: chr 7
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.596A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.397A>G
  hgvsp: ENSP00000413233.1:p.Ile133Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.121A>G
  hgvsp: ENSP00000387214.1:p.Ile41Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.475A>G
  hgvsp: ENSP00000395835.2:p.Ile159Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.397A>G
  hgvsp: ENSP00000390544.1:p.Ile133Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.397A>G
  hgvsp: ENSP00000313062.3:p.Ile133Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.397A>G
  hgvsp: ENSP00000384416.3:p.Ile133Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.397A>G
  hgvsp: ENSP00000387220.1:p.Ile133Val
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8130
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile159Val
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

7-31614156-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614156
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614156
    reference: chr 7
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.398T>A
  hgvsp: ENSP00000390544.1:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.398T>A
  hgvsp: ENSP00000413233.1:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.122T>A
  hgvsp: ENSP00000387214.1:p.Ile41Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.398T>A
  hgvsp: ENSP00000387220.1:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.476T>A
  hgvsp: ENSP00000395835.2:p.Ile159Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.398T>A
  hgvsp: ENSP00000384416.3:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.398T>A
  hgvsp: ENSP00000313062.3:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.597T>A
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42868
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile159Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/7-31614158-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614158
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614158
    reference: chr 7
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.478C>A
  hgvsp: ENSP00000395835.2:p.Pro160Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.400C>A
  hgvsp: ENSP00000313062.3:p.Pro134Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.400C>A
  hgvsp: ENSP00000390544.1:p.Pro134Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.400C>A
  hgvsp: ENSP00000387220.1:p.Pro134Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.400C>A
  hgvsp: ENSP00000384416.3:p.Pro134Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.400C>A
  hgvsp: ENSP00000413233.1:p.Pro134Thr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.599C>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.124C>A
  hgvsp: ENSP00000387214.1:p.Pro42Thr
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro160Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

7-31614161-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614161
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614161
    reference: chr 7
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.481G>C
  hgvsp: ENSP00000395835.2:p.Glu161Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.403G>C
  hgvsp: ENSP00000384416.3:p.Glu135Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.403G>C
  hgvsp: ENSP00000313062.3:p.Glu135Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.403G>C
  hgvsp: ENSP00000390544.1:p.Glu135Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.127G>C
  hgvsp: ENSP00000387214.1:p.Glu43Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.403G>C
  hgvsp: ENSP00000413233.1:p.Glu135Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.403G>C
  hgvsp: ENSP00000387220.1:p.Glu135Gln
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.602G>C
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu161Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

7-31614161-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614161
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614161
    reference: chr 7
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.127G>T
  hgvsp: ENSP00000387214.1:p.Glu43Ter
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.403G>T
  hgvsp: ENSP00000413233.1:p.Glu135Ter
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.403G>T
  hgvsp: ENSP00000384416.3:p.Glu135Ter
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.481G>T
  hgvsp: ENSP00000395835.2:p.Glu161Ter
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.403G>T
  hgvsp: ENSP00000390544.1:p.Glu135Ter
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.602G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.403G>T
  hgvsp: ENSP00000313062.3:p.Glu135Ter
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.403G>T
  hgvsp: ENSP00000387220.1:p.Glu135Ter
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu161Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-31614163-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614163
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614163
    reference: chr 7
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.405A>C
  hgvsp: ENSP00000387220.1:p.Glu135Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.405A>C
  hgvsp: ENSP00000384416.3:p.Glu135Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.405A>C
  hgvsp: ENSP00000313062.3:p.Glu135Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.405A>C
  hgvsp: ENSP00000413233.1:p.Glu135Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.129A>C
  hgvsp: ENSP00000387214.1:p.Glu43Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.604A>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.405A>C
  hgvsp: ENSP00000390544.1:p.Glu135Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.483A>C
  hgvsp: ENSP00000395835.2:p.Glu161Asp
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu161Asp
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-31614167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614167
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614167
    reference: chr 7
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.409C>G
  hgvsp: ENSP00000384416.3:p.Leu137Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.487C>G
  hgvsp: ENSP00000395835.2:p.Leu163Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.409C>G
  hgvsp: ENSP00000387220.1:p.Leu137Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.409C>G
  hgvsp: ENSP00000390544.1:p.Leu137Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.409C>G
  hgvsp: ENSP00000313062.3:p.Leu137Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.409C>G
  hgvsp: ENSP00000413233.1:p.Leu137Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.133C>G
  hgvsp: ENSP00000387214.1:p.Leu45Val
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.608C>G
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu163Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-31614168-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614168
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614168
    reference: chr 7
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.410T>G
  hgvsp: ENSP00000413233.1:p.Leu137Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.488T>G
  hgvsp: ENSP00000395835.2:p.Leu163Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.410T>G
  hgvsp: ENSP00000390544.1:p.Leu137Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.609T>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.410T>G
  hgvsp: ENSP00000384416.3:p.Leu137Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.134T>G
  hgvsp: ENSP00000387214.1:p.Leu45Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.410T>G
  hgvsp: ENSP00000387220.1:p.Leu137Arg
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.410T>G
  hgvsp: ENSP00000313062.3:p.Leu137Arg
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu163Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

7-31614182-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614182
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614182
    reference: chr 7
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.502A>T
  hgvsp: ENSP00000395835.2:p.Ile168Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.424A>T
  hgvsp: ENSP00000313062.3:p.Ile142Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387220
  ensembl transcript: ENST00000409717
  gene symbol: CCDC129
  hgvsc: ENST00000409717.1:c.424A>T
  hgvsp: ENSP00000387220.1:p.Ile142Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.148A>T
  hgvsp: ENSP00000387214.1:p.Ile50Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.424A>T
  hgvsp: ENSP00000384416.3:p.Ile142Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.424A>T
  hgvsp: ENSP00000390544.1:p.Ile142Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.424A>T
  hgvsp: ENSP00000413233.1:p.Ile142Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.623A>T
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile168Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

7-31614191-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614191
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614191
    reference: chr 7
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.433G>C
  hgvsp: ENSP00000390544.1:p.Val145Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.433G>C
  hgvsp: ENSP00000384416.3:p.Val145Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.433G>C
  hgvsp: ENSP00000313062.3:p.Val145Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.632G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.157G>C
  hgvsp: ENSP00000387214.1:p.Val53Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.433G>C
  hgvsp: ENSP00000413233.1:p.Val145Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.511G>C
  hgvsp: ENSP00000395835.2:p.Val171Leu
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val171Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-31614195-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614195
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614195
    reference: chr 7
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.636A>G
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.161A>G
  hgvsp: ENSP00000387214.1:p.Glu54Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.515A>G
  hgvsp: ENSP00000395835.2:p.Glu172Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.437A>G
  hgvsp: ENSP00000313062.3:p.Glu146Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.437A>G
  hgvsp: ENSP00000413233.1:p.Glu146Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.437A>G
  hgvsp: ENSP00000390544.1:p.Glu146Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.437A>G
  hgvsp: ENSP00000384416.3:p.Glu146Gly
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14631
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu172Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-31614202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614202
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614202
    reference: chr 7
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.444C>T
  hgvsp: ENST00000454513.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.444C>T
  hgvsp: ENST00000319386.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.168C>T
  hgvsp: ENST00000409210.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.643C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.444C>T
  hgvsp: ENST00000456011.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.444C>T
  hgvsp: ENST00000407970.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.522C>T
  hgvsp: ENST00000451887.2:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu174Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

7-31614206-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614206
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614206
    reference: chr 7
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.448G>T
  hgvsp: ENSP00000384416.3:p.Asp150Tyr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.526G>T
  hgvsp: ENSP00000395835.2:p.Asp176Tyr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.448G>T
  hgvsp: ENSP00000413233.1:p.Asp150Tyr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.647G>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.448G>T
  hgvsp: ENSP00000313062.3:p.Asp150Tyr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.448G>T
  hgvsp: ENSP00000390544.1:p.Asp150Tyr
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.172G>T
  hgvsp: ENSP00000387214.1:p.Asp58Tyr
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp176Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

7-31614209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614209
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614209
    reference: chr 7
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.451C>T
  hgvsp: ENST00000454513.1:c.451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.650C>T
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.451C>T
  hgvsp: ENST00000319386.3:c.451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.529C>T
  hgvsp: ENST00000451887.2:c.529C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.451C>T
  hgvsp: ENST00000456011.1:c.451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.451C>T
  hgvsp: ENST00000407970.3:c.451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.175C>T
  hgvsp: ENST00000409210.1:c.175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu177Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-31614213-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614213
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614213
    reference: chr 7
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.533G>C
  hgvsp: ENSP00000395835.2:p.Gly178Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.179G>C
  hgvsp: ENSP00000387214.1:p.Gly60Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.455G>C
  hgvsp: ENSP00000413233.1:p.Gly152Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.455G>C
  hgvsp: ENSP00000390544.1:p.Gly152Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.654G>C
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.455G>C
  hgvsp: ENSP00000313062.3:p.Gly152Ala
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.455G>C
  hgvsp: ENSP00000384416.3:p.Gly152Ala
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly178Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

7-31614227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614227
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614227
    reference: chr 7
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.469G>A
  hgvsp: ENSP00000384416.3:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.469G>A
  hgvsp: ENSP00000413233.1:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.469G>A
  hgvsp: ENSP00000390544.1:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.193G>A
  hgvsp: ENSP00000387214.1:p.Glu65Lys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.469G>A
  hgvsp: ENSP00000313062.3:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000180347
  ensembl transcript: ENST00000482748
  gene symbol: CCDC129
  hgvsc: ENST00000482748.1:n.668G>A
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.547G>A
  hgvsp: ENSP00000395835.2:p.Glu183Lys
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu183Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

7-31614235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614235
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614235
    reference: chr 7
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.477C>T
  hgvsp: ENST00000319386.3:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.477C>T
  hgvsp: ENST00000454513.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.555C>T
  hgvsp: ENST00000451887.2:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.201C>T
  hgvsp: ENST00000409210.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.477C>T
  hgvsp: ENST00000407970.3:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.477C>T
  hgvsp: ENST00000456011.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp185Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-31614242-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614242
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614242
    reference: chr 7
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.562A>C
  hgvsp: ENSP00000395835.2:p.Met188Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.484A>C
  hgvsp: ENSP00000384416.3:p.Met162Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.484A>C
  hgvsp: ENSP00000390544.1:p.Met162Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000413233
  ensembl transcript: ENST00000454513
  gene symbol: CCDC129
  hgvsc: ENST00000454513.1:c.484A>C
  hgvsp: ENSP00000413233.1:p.Met162Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.484A>C
  hgvsp: ENSP00000313062.3:p.Met162Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.208A>C
  hgvsp: ENSP00000387214.1:p.Met70Leu
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met188Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

7-31614251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614251
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614251
    reference: chr 7
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.217C>T
  hgvsp: ENSP00000387214.1:p.Pro73Ser
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.493C>T
  hgvsp: ENSP00000390544.1:p.Pro165Ser
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.493C>T
  hgvsp: ENSP00000313062.3:p.Pro165Ser
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.571C>T
  hgvsp: ENSP00000395835.2:p.Pro191Ser
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.493C>T
  hgvsp: ENSP00000384416.3:p.Pro165Ser
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro191Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-31614256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614256
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614256
    reference: chr 7
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.498C>T
  hgvsp: ENST00000456011.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.498C>T
  hgvsp: ENST00000319386.3:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.498C>T
  hgvsp: ENST00000407970.3:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.222C>T
  hgvsp: ENST00000409210.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.576C>T
  hgvsp: ENST00000451887.2:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42898
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala192Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

7-31614260-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614260
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614260
    reference: chr 7
allele count: 17
allele frequency: 1.401345291479821e-4
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.502T>C
  hgvsp: ENSP00000313062.3:p.Phe168Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.226T>C
  hgvsp: ENSP00000387214.1:p.Phe76Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.580T>C
  hgvsp: ENSP00000395835.2:p.Phe194Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000390544
  ensembl transcript: ENST00000456011
  gene symbol: CCDC129
  hgvsc: ENST00000456011.1:c.502T>C
  hgvsp: ENSP00000390544.1:p.Phe168Leu
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.502T>C
  hgvsp: ENSP00000384416.3:p.Phe168Leu
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 42894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe194Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

7-31614283-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614283
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614283
    reference: chr 7
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.603C>G
  hgvsp: ENST00000451887.2:c.603C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.525C>G
  hgvsp: ENST00000319386.3:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.249C>G
  hgvsp: ENST00000409210.1:c.249C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.525C>G
  hgvsp: ENST00000407970.3:c.525C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala201Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

7-31614293-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614293
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614293
    reference: chr 7
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.259A>G
  hgvsp: ENSP00000387214.1:p.Asn87Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.535A>G
  hgvsp: ENSP00000384416.3:p.Asn179Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.613A>G
  hgvsp: ENSP00000395835.2:p.Asn205Asp
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.535A>G
  hgvsp: ENSP00000313062.3:p.Asn179Asp
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn205Asp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-31614297-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614297
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614297
    reference: chr 7
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.617T>A
  hgvsp: ENSP00000395835.2:p.Ile206Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.539T>A
  hgvsp: ENSP00000313062.3:p.Ile180Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.263T>A
  hgvsp: ENSP00000387214.1:p.Ile88Asn
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.539T>A
  hgvsp: ENSP00000384416.3:p.Ile180Asn
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42752
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 32
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genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2274
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile206Asn
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

7-31614298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614298
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614298
    reference: chr 7
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.540C>T
  hgvsp: ENST00000407970.3:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.264C>T
  hgvsp: ENST00000409210.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.618C>T
  hgvsp: ENST00000451887.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.540C>T
  hgvsp: ENST00000319386.3:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile206Ile
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-31614299-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614299
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614299
    reference: chr 7
allele count: 6
allele frequency: 4.952865232537022e-5
allele num: 121142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.541C>T
  hgvsp: ENSP00000313062.3:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.265C>T
  hgvsp: ENSP00000387214.1:p.Arg89Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.619C>T
  hgvsp: ENSP00000395835.2:p.Arg207Cys
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.541C>T
  hgvsp: ENSP00000384416.3:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg207Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-31614300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614300
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614300
    reference: chr 7
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.266G>A
  hgvsp: ENSP00000387214.1:p.Arg89His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.542G>A
  hgvsp: ENSP00000313062.3:p.Arg181His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.620G>A
  hgvsp: ENSP00000395835.2:p.Arg207His
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.542G>A
  hgvsp: ENSP00000384416.3:p.Arg181His
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg207His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

7-31614303-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614303
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614303
    reference: chr 7
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000395835
  ensembl transcript: ENST00000451887
  gene symbol: CCDC129
  hgvsc: ENST00000451887.2:c.623T>G
  hgvsp: ENSP00000395835.2:p.Val208Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000384416
  ensembl transcript: ENST00000407970
  gene symbol: CCDC129
  hgvsc: ENST00000407970.3:c.545T>G
  hgvsp: ENSP00000384416.3:p.Val182Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000313062
  ensembl transcript: ENST00000319386
  gene symbol: CCDC129
  hgvsc: ENST00000319386.3:c.545T>G
  hgvsp: ENSP00000313062.3:p.Val182Gly
  variant of: http://identifiers.org/hgnc/27363
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.269T>G
  hgvsp: ENSP00000387214.1:p.Val90Gly
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42782
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val208Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/7-31614313-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31614313
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 31614313
    reference: chr 7
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180347
  ensembl protein: ENSP00000387214
  ensembl transcript: ENST00000409210
  gene symbol: CCDC129
  hgvsc: ENST00000409210.1:c.279A>C
  hgvsp: ENSP00000387214.1:p.Glu93Asp
  variant of: http://identifiers.org/hgnc/27363
canonical: true
consequence: missense
filter: PASS
hgvs: p.Glu211Asp
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14948
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.668706196462343e-4
allele num: 17978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.92e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

FS
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.305e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.050558e6

QD
type: SiteQuality
SIO_000300: 1.099e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 4232
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1070
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17568
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441124e-4
allele num: 1138
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

MQ
type: SiteQuality
SIO_000300: 5.728e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 1.424e0

QD
type: SiteQuality
SIO_000300: 1.015e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.722e-1

DP
type: SiteQuality
SIO_000300: 1.036906e6

GenotypeQuality
all individuals: 1123
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 17318
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 73

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 54

GenotypeQuality
all individuals: 4755
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 5424
bin: 9.75e1
variant carriers: 832

GenotypeQuality
all individuals: 1512
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 490
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 359
bin: 9.25e1
variant carriers: 86

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 17

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 34

GenotypeQuality
all individuals: 3560
bin: 6.25e1
variant carriers: 23

European (Non-Finnish)
type: Population
allele count: 389
allele frequency: 2.290660699564245e-2
allele num: 16982
num of homozygotes: 4

South Asian
type: Population
allele count: 188
allele frequency: 2.205019939010087e-2
allele num: 8526
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 92
allele frequency: 4.042179261862917e-2
allele num: 2276
num of homozygotes: 2

Latino
type: Population
allele count: 78
allele frequency: 7.330827067669173e-2
allele num: 1064
num of homozygotes: 2

East Asian
type: Population
allele count: 1
allele frequency: 4.504504504504505e-4
allele num: 2220
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 4.191616766467066e-2
allele num: 334
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 4.506534474988734e-3
allele num: 4438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.024415e6

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 1189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4075
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.5662100456621e-4
allele num: 2190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.017054e6

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

GenotypeQuality
all individuals: 14645
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18149
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5914
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.651162790697675e-4
allele num: 2150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 5.018820577164366e-4
allele num: 15940
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.893939393939394e-3
allele num: 4224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.625e0

FS
type: SiteQuality
SIO_000300: 3.6139e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.739e0

QD
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.016e0

DP
type: SiteQuality
SIO_000300: 1.012194e6

GenotypeQuality
all individuals: 1371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13704
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.38e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.022465e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5241
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 104
allele frequency: 1.769309288873767e-2
allele num: 5878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.132697e6

MQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

MQ
type: SiteQuality
SIO_000300: 5.555e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1383
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.620689655172413e-5
allele num: 11600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44994
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.136021e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 6041
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.215231934783572e-5
allele num: 45142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

FS
type: SiteQuality
SIO_000300: 3.493e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.448e1

DP
type: SiteQuality
SIO_000300: 1.15226e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5069
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.188854353631309e-5
allele num: 45686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8767e1

QD
type: SiteQuality
SIO_000300: 1.012e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.693e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.833e0

DP
type: SiteQuality
SIO_000300: 1.194437e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7061
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.41467519353753e-5
allele num: 11884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.307188697936857e-5
allele num: 46434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

VQSLOD
type: SiteQuality
SIO_000300: -1.336e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.222918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 5.82e0

FS
type: SiteQuality
SIO_000300: 4.873e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 272
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.534683855125844e-4
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5360
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.302e0

QD
type: SiteQuality
SIO_000300: 9.48e0

DP
type: SiteQuality
SIO_000300: 1.324874e6

FS
type: SiteQuality
SIO_000300: 1.0467e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
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variant carriers: 0

GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 567
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 710
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 725
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variant carriers: 0

GenotypeQuality
all individuals: 4545
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.950078003120125e-5
allele num: 51280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.106e0

QD
type: SiteQuality
SIO_000300: 1.408e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.139e0

DP
type: SiteQuality
SIO_000300: 1.376398e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 1293
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 1

GenotypeQuality
all individuals: 3011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.141552511415525e-4
allele num: 8760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 9.152719665271967e-4
allele num: 53536
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.930540582165409e-4
allele num: 12986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.546099290780142e-4
allele num: 5640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.427305e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
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GenotypeQuality
all individuals: 912
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4010
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GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.25e1
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GenotypeQuality
all individuals: 4636
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.09351011863224e-4
allele num: 14330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.198e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

QD
type: SiteQuality
SIO_000300: 1.236e1

DP
type: SiteQuality
SIO_000300: 1.578549e6

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
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variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
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variant carriers: 0

GenotypeQuality
all individuals: 4643
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GenotypeQuality
all individuals: 1649
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variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054407423028258e-4
allele num: 9484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.237e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 8.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 1.586872e6

GenotypeQuality
all individuals: 604
bin: 4.75e1
variant carriers: 423

GenotypeQuality
all individuals: 14180
bin: 6.25e1
variant carriers: 633

GenotypeQuality
all individuals: 1916
bin: 2.25e1
variant carriers: 150

GenotypeQuality
all individuals: 783
bin: 5.25e1
variant carriers: 541

GenotypeQuality
all individuals: 972
bin: 7.75e1
variant carriers: 733

GenotypeQuality
all individuals: 412
bin: 3.25e1
variant carriers: 207

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 54

GenotypeQuality
all individuals: 514
bin: 8.75e1
variant carriers: 432

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 92

GenotypeQuality
all individuals: 530
bin: 5.75e1
variant carriers: 358

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 661

GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 419

GenotypeQuality
all individuals: 1621
bin: 6.75e1
variant carriers: 672

GenotypeQuality
all individuals: 35061
bin: 9.75e1
variant carriers: 33814

Latino
type: Population
allele count: 6404
allele frequency: 5.773530472412549e-1
allele num: 11092
num of homozygotes: 1840

South Asian
type: Population
allele count: 6941
allele frequency: 4.432877762166305e-1
allele num: 15658
num of homozygotes: 1524

European (Non-Finnish)
type: Population
allele count: 27099
allele frequency: 4.202046828965731e-1
allele num: 64490
num of homozygotes: 5476

Other
type: Population
allele count: 366
allele frequency: 4.236111111111111e-1
allele num: 864
num of homozygotes: 73

European (Finnish)
type: Population
allele count: 2492
allele frequency: 3.882829541913368e-1
allele num: 6418
num of homozygotes: 482

African
type: Population
allele count: 5308
allele frequency: 5.23058730784391e-1
allele num: 10148
num of homozygotes: 1361

East Asian
type: Population
allele count: 2802
allele frequency: 3.371029836381136e-1
allele num: 8312
num of homozygotes: 442

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

DP
type: SiteQuality
SIO_000300: 2.392694e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.695e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.75e1
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GenotypeQuality
all individuals: 1317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
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GenotypeQuality
all individuals: 732
bin: 8.25e1
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GenotypeQuality
all individuals: 37361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4528
bin: 6.75e1
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GenotypeQuality
all individuals: 317
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GenotypeQuality
all individuals: 707
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GenotypeQuality
all individuals: 902
bin: 5.25e1
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GenotypeQuality
all individuals: 6422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.500285008550257e-5
allele num: 10526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 1.63359e6

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 4.567e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

MQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

GenotypeQuality
all individuals: 6469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
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GenotypeQuality
all individuals: 3849
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 4481
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GenotypeQuality
all individuals: 32
bin: 1.25e1
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GenotypeQuality
all individuals: 38166
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GenotypeQuality
all individuals: 71
bin: 1.75e1
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GenotypeQuality
all individuals: 308
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GenotypeQuality
all individuals: 698
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GenotypeQuality
all individuals: 1266
bin: 7.75e1
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GenotypeQuality
all individuals: 620
bin: 2.75e1
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GenotypeQuality
all individuals: 377
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 9
allele frequency: 8.553506937844516e-4
allele num: 10522
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.240181893344357e-3
allele num: 9676
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.0344500203445e-4
allele num: 14746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.585791309863622e-4
allele num: 6306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.930067230675202e-4
allele num: 62174
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.422e1

FS
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.399e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

DP
type: SiteQuality
SIO_000300: 1.633251e6

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

GenotypeQuality
all individuals: 1254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.22061191626409e-5
allele num: 62100
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.511128019783147e-5
allele num: 10514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.193317422434368e-3
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14702
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.628906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.33e0

QD
type: SiteQuality
SIO_000300: 1.659e1

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.03476821192053e-4
allele num: 9664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.864e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.626211e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.068e-1

FS
type: SiteQuality
SIO_000300: 1.271e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 728
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.250869607620038e-5
allele num: 61522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.613748e6

QD
type: SiteQuality
SIO_000300: 1.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 3.169e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.204e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4265
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629354449767002e-5
allele num: 61374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 2.1506e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.063e0

DP
type: SiteQuality
SIO_000300: 1.607136e6

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 275
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GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682368775235532e-5
allele num: 59440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14222
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.263e0

DP
type: SiteQuality
SIO_000300: 1.553885e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.342e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3794
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 33407
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.062022090059473e-4
allele num: 9416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59156
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.485e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.542219e6

QD
type: SiteQuality
SIO_000300: 2.468e1

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075731497418244e-4
allele num: 9296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.474915e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.722e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.326611833377554e-4
allele num: 7538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.931e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.087e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2785
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GenotypeQuality
all individuals: 666
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.837222120154327e-5
allele num: 54430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13518
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.387509e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.202e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.926114257097731e-5
allele num: 51918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.357931435212086e-4
allele num: 6884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2782e6

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 1.026e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6664
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.342286071205497e-4
allele num: 12808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49932
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.206166e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.448e-1

FS
type: SiteQuality
SIO_000300: 9.287000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 1410
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.585012511523772e-5
allele num: 45558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12064
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.267e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.444e0

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.796e0

QD
type: SiteQuality
SIO_000300: 1.251e1

DP
type: SiteQuality
SIO_000300: 1.106047e6

GenotypeQuality
all individuals: 415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.399126490844952e-5
allele num: 11906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.069280162216965e-4
allele num: 5918
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.72e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.758e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

DP
type: SiteQuality
SIO_000300: 1.079558e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

GenotypeQuality
all individuals: 1736
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17017
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2676
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 4894
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variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.042923e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.262e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 619
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39053
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variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.256e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.729618e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.307e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017683626048645e-5
allele num: 66276
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 1.453e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.733009e6

GenotypeQuality
all individuals: 584
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.846e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.297e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.736995e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

QD
type: SiteQuality
SIO_000300: 1.628e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2209
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.739542e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.037e0

FS
type: SiteQuality
SIO_000300: 2.257e0

QD
type: SiteQuality
SIO_000300: 1.536e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 2219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.317119393556538e-5
allele num: 15830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 5.719e0

DP
type: SiteQuality
SIO_000300: 1.747664e6

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.601e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.273e1

FS
type: SiteQuality
SIO_000300: 3.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.584e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.763155e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 418
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variant carriers: 0

GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 42318
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variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.697313285679073e-4
allele num: 16228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.764756e6

FS
type: SiteQuality
SIO_000300: 2.46e0

QD
type: SiteQuality
SIO_000300: 1.139e1

MQ
type: SiteQuality
SIO_000300: 6.012e1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

GenotypeQuality
all individuals: 2099
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 369
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.139489194499017e-5
allele num: 16288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 1.765552e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.38e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

GenotypeQuality
all individuals: 2102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 2251
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GenotypeQuality
all individuals: 505
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 8091
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1188
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.385e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.768282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
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variant carriers: 0

GenotypeQuality
all individuals: 8124
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2115
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.64e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 9.363e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.772082e6

VQSLOD
type: SiteQuality
SIO_000300: -8.874e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.628e0

GenotypeQuality
all individuals: 2117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2973
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.872e0

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.664e1

DP
type: SiteQuality
SIO_000300: 1.772427e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 7.488e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.92e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1194
bin: 8.25e1
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
all individuals: 109
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 8132
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 3.058e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.018e0

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

DP
type: SiteQuality
SIO_000300: 1.772575e6

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 8129
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 2.03e0

QD
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 2.0e-4

DP
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SIO_000300: 1.772965e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

MQRankSum
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SIO_000300: -8.2e-2

FS
type: SiteQuality
SIO_000300: 2.227e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
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SIO_000300: 1.773383e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
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SIO_000300: 3.0e-4

FS
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SIO_000300: 2.692e0

QD
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MQRankSum
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SIO_000300: 1.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
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SIO_000300: 1.0e-2

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 2.692e0

InbreedingCoeff
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ClippingRankSum
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SIO_000300: 7.000000000000001e-2

VQSLOD
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DP
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MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
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SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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QD
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10388
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66720
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East Asian
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allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
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South Asian
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FS
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VQSLOD
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ClippingRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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South Asian
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Other
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East Asian
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African
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.774357e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

FS
type: SiteQuality
SIO_000300: 1.144e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.77433e6

QD
type: SiteQuality
SIO_000300: 1.193e1

FS
type: SiteQuality
SIO_000300: 4.031e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 2116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8150
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 511
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variant carriers: 0

GenotypeQuality
all individuals: 42946
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884615384615385e-4
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.833e0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.854e0

DP
type: SiteQuality
SIO_000300: 1.774467e6

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 1.77416e6

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8150
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.774113e6

FS
type: SiteQuality
SIO_000300: 9.710000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -5.697e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

QD
type: SiteQuality
SIO_000300: 1.268e1

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 471
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8145
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.773775e6

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

FS
type: SiteQuality
SIO_000300: 6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.129e0

QD
type: SiteQuality
SIO_000300: 1.57e1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
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variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2111
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variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 5.008e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.65e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

DP
type: SiteQuality
SIO_000300: 1.773511e6

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 511
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.538e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.77338e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.962e0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.423e0

QD
type: SiteQuality
SIO_000300: 1.334e1

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.773128e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.978e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.098447149109659e-4
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734906315058987e-4
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.585e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 1.363e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

DP
type: SiteQuality
SIO_000300: 1.773783e6

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42833
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 1.771252e6

VQSLOD
type: SiteQuality
SIO_000300: -7.467e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.989e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.232e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.574e0

QD
type: SiteQuality
SIO_000300: 1.677e1

MQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

GenotypeQuality
all individuals: 2102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.354e1

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.607e0

FS
type: SiteQuality
SIO_000300: 5.325e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.536e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.770252e6

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

DP
type: SiteQuality
SIO_000300: 1.769481e6

GenotypeQuality
all individuals: 42766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.014e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 1.769433e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 2.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.065e1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.503902029055108e-5
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.479e1

FS
type: SiteQuality
SIO_000300: 5.337e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 1.769438e6

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42802
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.768768e6

FS
type: SiteQuality
SIO_000300: 4.593e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.074e0

QD
type: SiteQuality
SIO_000300: 1.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.343e0

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
all individuals: 1187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

QD
type: SiteQuality
SIO_000300: 1.528e1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.768e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.956e0