5-102237138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102237138
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102237138
    reference: chr 5
allele count: 1
allele frequency: 9.61741906941853e-6
allele num: 103978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.309+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.268+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.268+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.268+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1593+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.233+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.268+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.108+21G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-12500G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-12500G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.268+21G>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

5-102237151-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102237151
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102237151
    reference: chr 5
allele count: 2
allele frequency: 1.949811843157135e-5
allele num: 102574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.108+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.268+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.233+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.309+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.268+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-12487T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.268+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.268+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-12487T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1593+34T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.268+34T>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

5-102237151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102237151
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102237151
    reference: chr 5
allele count: 2
allele frequency: 1.949811843157135e-5
allele num: 102574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-12487T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1593+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.108+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.268+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.268+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-12487T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.268+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.233+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.309+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.268+34T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.268+34T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13620
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

5-102237166-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102237166
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102237165
    reference: chr 5
allele count: 4
allele frequency: 4.051535531966615e-5
allele num: 98728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-12469delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.268+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1593+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.309+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.268+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.268+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.268+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.233+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.268+52delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-12469delT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.108+52delT
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12366
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: AT
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-102249587-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249587
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249587
    reference: chr 5
allele count: 1753
allele frequency: 1.462539629567829e-2
allele num: 119860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-51G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-51G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 5.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10929
  bin: 3.25e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 8679
  bin: 2.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 3.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 4.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 1.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 4.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 2.75e1
  variant carriers: 314
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 17
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

5-102249596-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249596
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249596
    reference: chr 5
allele count: 2
allele frequency: 1.665306666222585e-5
allele num: 120098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-42T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-42T>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13684
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

5-102249604-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249604
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249604
    reference: chr 5
allele count: 1
allele frequency: 8.320436656515735e-6
allele num: 120186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-34G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-34G>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

5-102249615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249615
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249615
    reference: chr 5
allele count: 3
allele frequency: 2.492191134445405e-5
allele num: 120376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-23C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-23C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-102249631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249631
    reference: chr 5
allele count: 3
allele frequency: 2.485336514564072e-5
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-7G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-7G>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.269-7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

5-102249631-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249632
    reference: chr 5
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-6dupT
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-6dupT
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.269-6dupT
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-102249631-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249631
    reference: chr 5
allele count: 2
allele frequency: 1.656891009709381e-5
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-7G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-7G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.269-7G>T
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

5-102249637-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249637
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249637
    reference: chr 5
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.269-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.211-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.269-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-23-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.269-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.109-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1592-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.310-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.269-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.234-1G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.269-1G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: c.269-1G>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

5-102249641-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249641
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249641
    reference: chr 5
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.272A>G
  hgvsp: ENSP00000282992.3:p.Asp91Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.313A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.272A>G
  hgvsp: ENSP00000314638.3:p.Asp91Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.272A>G
  hgvsp: ENSP00000403461.2:p.Asp91Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1589A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.214A>G
  hgvsp: ENSP00000302544.4:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.272A>G
  hgvsp: ENSP00000396493.3:p.Asp91Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.272A>G
  hgvsp: ENSP00000306100.7:p.Asp91Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.237A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-20A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.112A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp91Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

5-102249649-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249649
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249649
    reference: chr 5
allele count: 2
allele frequency: 1.653958750268768e-5
allele num: 120922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.280C>G
  hgvsp: ENSP00000282992.3:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.222C>G
  hgvsp: ENSP00000302544.4:p.Ser74Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.280C>G
  hgvsp: ENSP00000396493.3:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.280C>G
  hgvsp: ENSP00000314638.3:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.280C>G
  hgvsp: ENSP00000403461.2:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1581C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-12C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.280C>G
  hgvsp: ENSP00000306100.7:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.321C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.245C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.120C>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro94Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS

5-102249650-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249650
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249650
    reference: chr 5
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.322C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.281C>G
  hgvsp: ENSP00000403461.2:p.Pro94Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.246C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1580C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.281C>G
  hgvsp: ENSP00000396493.3:p.Pro94Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.223C>G
  hgvsp: ENSP00000302544.4:p.Leu75Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-11C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.281C>G
  hgvsp: ENSP00000306100.7:p.Pro94Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.281C>G
  hgvsp: ENSP00000314638.3:p.Pro94Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.281C>G
  hgvsp: ENSP00000282992.3:p.Pro94Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.121C>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11476
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro94Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

5-102249652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249652
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249652
    reference: chr 5
allele count: 3
allele frequency: 2.480691947673938e-5
allele num: 120934
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.283C>T
  hgvsp: ENSP00000306100.7:p.Arg95Ter
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1578C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.324C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.283C>T
  hgvsp: ENSP00000396493.3:p.Arg95Ter
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.283C>T
  hgvsp: ENSP00000403461.2:p.Arg95Ter
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.248C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-9C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.123C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.225C>T
  hgvsp: ENST00000345721.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.283C>T
  hgvsp: ENSP00000314638.3:p.Arg95Ter
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.283C>T
  hgvsp: ENSP00000282992.3:p.Arg95Ter
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg95Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-102249656-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249656
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249656
    reference: chr 5
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.287C>G
  hgvsp: ENSP00000282992.3:p.Ala96Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.287C>G
  hgvsp: ENSP00000403461.2:p.Ala96Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.287C>G
  hgvsp: ENSP00000306100.7:p.Ala96Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.287C>G
  hgvsp: ENSP00000314638.3:p.Ala96Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.287C>G
  hgvsp: ENSP00000396493.3:p.Ala96Gly
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.252C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.328C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.229C>G
  hgvsp: ENSP00000302544.4:p.Pro77Ala
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-5C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1574C>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.127C>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala96Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-102249657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249657
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249657
    reference: chr 5
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.288C>T
  hgvsp: ENST00000438793.3:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.230C>T
  hgvsp: ENSP00000302544.4:p.Pro77Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1573C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.288C>T
  hgvsp: ENST00000346918.2:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.329C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.288C>T
  hgvsp: ENST00000348126.2:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.288C>T
  hgvsp: ENST00000455264.2:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.-4C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.128C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.253C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.288C>T
  hgvsp: ENST00000304400.7:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro77Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/5-102249674-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249674
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249674
    reference: chr 5
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.305A>C
  hgvsp: ENSP00000314638.3:p.His102Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1556A>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.247A>C
  hgvsp: ENSP00000302544.4:p.Ile83Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.14A>C
  hgvsp: ENSP00000274392.9:p.His5Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.305A>C
  hgvsp: ENSP00000306100.7:p.His102Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.305A>C
  hgvsp: ENSP00000403461.2:p.His102Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.305A>C
  hgvsp: ENSP00000396493.3:p.His102Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.270A>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.145A>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.305A>C
  hgvsp: ENSP00000282992.3:p.His102Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.346A>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His102Pro
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

5-102249678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249678
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249678
    reference: chr 5
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.309C>T
  hgvsp: ENST00000438793.3:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.309C>T
  hgvsp: ENST00000348126.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1552C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.350C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.309C>T
  hgvsp: ENST00000346918.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.309C>T
  hgvsp: ENST00000455264.2:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.251C>T
  hgvsp: ENSP00000302544.4:p.Thr84Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.18C>T
  hgvsp: ENST00000274392.9:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.309C>T
  hgvsp: ENST00000304400.7:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.274C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.149C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr84Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

5-102249687-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249687
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249687
    reference: chr 5
allele count: 2
allele frequency: 1.652865241896828e-5
allele num: 121002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1543T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.318T>C
  hgvsp: ENST00000348126.2:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.158T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.27T>C
  hgvsp: ENST00000274392.9:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.359T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.318T>C
  hgvsp: ENST00000304400.7:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.283T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.318T>C
  hgvsp: ENST00000346918.2:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.260T>C
  hgvsp: ENSP00000302544.4:p.Phe87Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.318T>C
  hgvsp: ENST00000438793.3:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.318T>C
  hgvsp: ENST00000455264.2:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe87Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

5-102249706-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249706
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249706
    reference: chr 5
allele count: 14
allele frequency: 1.157445682727603e-4
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.46T>C
  hgvsp: ENSP00000274392.9:p.Ser16Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.378T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.302T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.279T>C
  hgvsp: ENST00000345721.2:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.337T>C
  hgvsp: ENSP00000314638.3:p.Ser113Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.177T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.337T>C
  hgvsp: ENSP00000396493.3:p.Ser113Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.337T>C
  hgvsp: ENSP00000282992.3:p.Ser113Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.337T>C
  hgvsp: ENSP00000403461.2:p.Ser113Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.337T>C
  hgvsp: ENSP00000306100.7:p.Ser113Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1524T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser113Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

5-102249709-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249709
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249709
    reference: chr 5
allele count: 3
allele frequency: 2.480568877129155e-5
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.340T>C
  hgvsp: ENSP00000403461.2:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.340T>C
  hgvsp: ENSP00000282992.3:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.340T>C
  hgvsp: ENSP00000314638.3:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.340T>C
  hgvsp: ENSP00000396493.3:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.49T>C
  hgvsp: ENSP00000274392.9:p.Ser17Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.180T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.282T>C
  hgvsp: ENST00000345721.2:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.305T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.381T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.340T>C
  hgvsp: ENSP00000306100.7:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1521T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser114Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

5-102249721-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249721
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249721
    reference: chr 5
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.317T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.352T>C
  hgvsp: ENSP00000396493.3:p.Tyr118His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.352T>C
  hgvsp: ENSP00000314638.3:p.Tyr118His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.192T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.61T>C
  hgvsp: ENSP00000274392.9:p.Tyr21His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.352T>C
  hgvsp: ENSP00000282992.3:p.Tyr118His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1509T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.352T>C
  hgvsp: ENSP00000403461.2:p.Tyr118His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.352T>C
  hgvsp: ENSP00000306100.7:p.Tyr118His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.294T>C
  hgvsp: ENST00000345721.2:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.393T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr118His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

5-102249723-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249723
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249723
    reference: chr 5
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.319C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.354C>T
  hgvsp: ENST00000455264.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.354C>T
  hgvsp: ENST00000438793.3:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.354C>T
  hgvsp: ENST00000348126.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.354C>T
  hgvsp: ENST00000304400.7:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.194C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.395C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.63C>T
  hgvsp: ENST00000274392.9:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.296C>T
  hgvsp: ENSP00000302544.4:p.Thr99Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.354C>T
  hgvsp: ENST00000346918.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1507C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr99Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

5-102249728-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249728
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249728
    reference: chr 5
allele count: 2
allele frequency: 1.655327672112695e-5
allele num: 120822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+3A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+3A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11460
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.356+3A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

5-102249734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249734
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249734
    reference: chr 5
allele count: 350
allele frequency: 2.898022720498129e-3
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+9A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+9A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14971
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 8
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

5-102249738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249738
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249738
    reference: chr 5
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+13G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+13G>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

5-102249749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249749
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249749
    reference: chr 5
allele count: 3
allele frequency: 2.487438435898711e-5
allele num: 120606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+24T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+24T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

5-102249750-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249750
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249749
    reference: chr 5
allele count: 15
allele frequency: 1.24384297726255e-4
allele num: 120594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+26delG
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+26delG
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18820
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: AG
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-102249754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249754
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249754
    reference: chr 5
allele count: 15
allele frequency: 1.244090569793481e-4
allele num: 120570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+29G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+29G>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-102249754-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249754
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249754
    reference: chr 5
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+29G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+29G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

5-102249755-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249755
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249755
    reference: chr 5
allele count: 2
allele frequency: 1.658787426391308e-5
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+30G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+30G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-102249765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249765
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249765
    reference: chr 5
allele count: 125
allele frequency: 1.037464933685241e-3
allele num: 120486
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+40A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+40A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13624
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

5-102249768-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249768
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249768
    reference: chr 5
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+43T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+43T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-102249775-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102249775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102249775
    reference: chr 5
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.356+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.298+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.356+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.65+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.356+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.397+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1505+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.356+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.356+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.196+50C>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.321+50C>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10964
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14346
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

5-102260612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260612
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260612
    reference: chr 5
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-49G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-49G>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10878
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13256
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

5-102260620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260620
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260620
    reference: chr 5
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-41C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-41C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

5-102260626-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260626
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260626
    reference: chr 5
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-35A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-35A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

5-102260628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260628
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260628
    reference: chr 5
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-33A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-33A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-102260634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260634
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260634
    reference: chr 5
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-27A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-27A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

5-102260642-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260642
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260642
    reference: chr 5
allele count: 2
allele frequency: 1.650900566258894e-5
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-19T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-19T>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

5-102260643-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260643
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260643
    reference: chr 5
allele count: 2
allele frequency: 1.650737054094653e-5
allele num: 121158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-18A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-18A>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

5-102260646-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260646
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260646
    reference: chr 5
allele count: 6
allele frequency: 4.95074013565028e-5
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-15T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-15T>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

5-102260649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260649
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260649
    reference: chr 5
allele count: 2
allele frequency: 1.649838315845047e-5
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.322-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.299-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.398-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.357-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1504-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.197-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.357-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.357-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.357-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.357-12T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.66-12T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-102260674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260674
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260674
    reference: chr 5
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.370G>A
  hgvsp: ENSP00000403461.2:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1491G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.335G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.79G>A
  hgvsp: ENSP00000274392.9:p.Gly27Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.370G>A
  hgvsp: ENSP00000396493.3:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.370G>A
  hgvsp: ENSP00000282992.3:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.411G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.370G>A
  hgvsp: ENSP00000314638.3:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.210G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.312G>A
  hgvsp: ENST00000345721.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.370G>A
  hgvsp: ENSP00000306100.7:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly124Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

5-102260684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260684
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260684
    reference: chr 5
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1481C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.345C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.89C>T
  hgvsp: ENSP00000274392.9:p.Thr30Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.322C>T
  hgvsp: ENSP00000302544.4:p.Gln108Ter
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.380C>T
  hgvsp: ENSP00000314638.3:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.380C>T
  hgvsp: ENSP00000306100.7:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.380C>T
  hgvsp: ENSP00000396493.3:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.421C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.380C>T
  hgvsp: ENSP00000403461.2:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.380C>T
  hgvsp: ENSP00000282992.3:p.Thr127Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.220C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln108Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

5-102260697-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260697
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260697
    reference: chr 5
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.102T>C
  hgvsp: ENST00000274392.9:c.102T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.393T>C
  hgvsp: ENST00000304400.7:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.358T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1468T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.393T>C
  hgvsp: ENST00000438793.3:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.335T>C
  hgvsp: ENSP00000302544.4:p.Ile112Thr
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.393T>C
  hgvsp: ENST00000348126.2:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.393T>C
  hgvsp: ENST00000455264.2:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.434T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.233T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.393T>C
  hgvsp: ENST00000346918.2:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile112Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

5-102260699-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260699
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260699
    reference: chr 5
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.395T>A
  hgvsp: ENSP00000403461.2:p.Ile132Asn
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.235T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.436T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.337T>A
  hgvsp: ENSP00000302544.4:p.Phe113Ile
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.395T>A
  hgvsp: ENSP00000282992.3:p.Ile132Asn
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.395T>A
  hgvsp: ENSP00000306100.7:p.Ile132Asn
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.360T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.395T>A
  hgvsp: ENSP00000314638.3:p.Ile132Asn
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.104T>A
  hgvsp: ENSP00000274392.9:p.Ile35Asn
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1466T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.395T>A
  hgvsp: ENSP00000396493.3:p.Ile132Asn
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile132Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP

5-102260703-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260703
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260703
    reference: chr 5
allele count: 3
allele frequency: 2.473084595980413e-5
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.399G>T
  hgvsp: ENST00000455264.2:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.399G>T
  hgvsp: ENST00000438793.3:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.341G>T
  hgvsp: ENSP00000302544.4:p.Cys114Phe
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1462G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.108G>T
  hgvsp: ENST00000274392.9:c.108G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.399G>T
  hgvsp: ENST00000348126.2:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.399G>T
  hgvsp: ENST00000304400.7:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.239G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.399G>T
  hgvsp: ENST00000346918.2:c.399G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.440G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.364G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys114Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-102260709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260709
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260709
    reference: chr 5
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1456C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.405C>T
  hgvsp: ENST00000438793.3:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.405C>T
  hgvsp: ENST00000455264.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.405C>T
  hgvsp: ENST00000304400.7:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.405C>T
  hgvsp: ENST00000346918.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.370C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.347C>T
  hgvsp: ENSP00000302544.4:p.Pro116Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.114C>T
  hgvsp: ENST00000274392.9:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.405C>T
  hgvsp: ENST00000348126.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.245C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.446C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro116Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

5-102260714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260714
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260714
    reference: chr 5
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.119C>T
  hgvsp: ENSP00000274392.9:p.Ala40Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.410C>T
  hgvsp: ENSP00000396493.3:p.Ala137Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.451C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.250C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1451C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.410C>T
  hgvsp: ENSP00000306100.7:p.Ala137Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.352C>T
  hgvsp: ENSP00000302544.4:p.Arg118Ter
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.410C>T
  hgvsp: ENSP00000282992.3:p.Ala137Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.410C>T
  hgvsp: ENSP00000403461.2:p.Ala137Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.410C>T
  hgvsp: ENSP00000314638.3:p.Ala137Val
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.375C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg118Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-102260719-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260719
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260719
    reference: chr 5
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.415A>G
  hgvsp: ENSP00000314638.3:p.Asn139Asp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.456A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.255A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.415A>G
  hgvsp: ENSP00000306100.7:p.Asn139Asp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.415A>G
  hgvsp: ENSP00000282992.3:p.Asn139Asp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.124A>G
  hgvsp: ENSP00000274392.9:p.Asn42Asp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1446A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.380A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.415A>G
  hgvsp: ENSP00000403461.2:p.Asn139Asp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.415A>G
  hgvsp: ENSP00000396493.3:p.Asn139Asp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.357A>G
  hgvsp: ENST00000345721.2:c.357A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn139Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

5-102260721-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260721
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260721
    reference: chr 5
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.417T>C
  hgvsp: ENST00000348126.2:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.417T>C
  hgvsp: ENST00000455264.2:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.382T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1444T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.417T>C
  hgvsp: ENST00000438793.3:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.359T>C
  hgvsp: ENSP00000302544.4:p.Met120Thr
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.126T>C
  hgvsp: ENST00000274392.9:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.417T>C
  hgvsp: ENST00000346918.2:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.417T>C
  hgvsp: ENST00000304400.7:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.257T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.458T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met120Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-102260724-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260724
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260724
    reference: chr 5
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.420T>A
  hgvsp: ENST00000304400.7:c.420T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.129T>A
  hgvsp: ENST00000274392.9:c.129T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.260T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.420T>A
  hgvsp: ENST00000455264.2:c.420T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.362T>A
  hgvsp: ENSP00000302544.4:p.Leu121His
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.385T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.420T>A
  hgvsp: ENST00000438793.3:c.420T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.461T>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.420T>A
  hgvsp: ENST00000348126.2:c.420T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.420T>A
  hgvsp: ENST00000346918.2:c.420T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1441T>A
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu121His
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-102260725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260725
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260725
    reference: chr 5
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.130C>T
  hgvsp: ENSP00000274392.9:p.Pro44Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.421C>T
  hgvsp: ENSP00000306100.7:p.Pro141Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.261C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.421C>T
  hgvsp: ENSP00000314638.3:p.Pro141Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.462C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1440C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.421C>T
  hgvsp: ENSP00000403461.2:p.Pro141Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.421C>T
  hgvsp: ENSP00000396493.3:p.Pro141Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.363C>T
  hgvsp: ENST00000345721.2:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.421C>T
  hgvsp: ENSP00000282992.3:p.Pro141Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.386C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro141Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

5-102260730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260730
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260730
    reference: chr 5
allele count: 3
allele frequency: 2.47610558114198e-5
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.426T>C
  hgvsp: ENST00000455264.2:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.426T>C
  hgvsp: ENST00000438793.3:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.135T>C
  hgvsp: ENST00000274392.9:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.266T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.426T>C
  hgvsp: ENST00000348126.2:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.426T>C
  hgvsp: ENST00000346918.2:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.368T>C
  hgvsp: ENSP00000302544.4:p.Leu123Pro
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1435T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.426T>C
  hgvsp: ENST00000304400.7:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.391T>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.467T>C
  variant of: http://identifiers.org/hgnc/8596
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu123Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-102260734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260734
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260734
    reference: chr 5
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.139C>T
  hgvsp: ENSP00000274392.9:p.Arg47Trp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.430C>T
  hgvsp: ENSP00000396493.3:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.430C>T
  hgvsp: ENSP00000282992.3:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.270C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.471C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.430C>T
  hgvsp: ENSP00000403461.2:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.430C>T
  hgvsp: ENSP00000314638.3:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.430C>T
  hgvsp: ENSP00000306100.7:p.Arg144Trp
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1431C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.395C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.372C>T
  hgvsp: ENST00000345721.2:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg144Trp
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

5-102260735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260735
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260735
    reference: chr 5
allele count: 32
allele frequency: 2.642487902360072e-4
allele num: 121098
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.431G>A
  hgvsp: ENSP00000306100.7:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.373G>A
  hgvsp: ENSP00000302544.4:p.Gly125Ser
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.431G>A
  hgvsp: ENSP00000314638.3:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1430G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.140G>A
  hgvsp: ENSP00000274392.9:p.Arg47Gln
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.431G>A
  hgvsp: ENSP00000282992.3:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.431G>A
  hgvsp: ENSP00000403461.2:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.431G>A
  hgvsp: ENSP00000396493.3:p.Arg144Gln
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.271G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.472G>A
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.396G>A
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg144Gln
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-102260735-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260735
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260735
    reference: chr 5
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.431G>T
  hgvsp: ENSP00000403461.2:p.Arg144Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.140G>T
  hgvsp: ENSP00000274392.9:p.Arg47Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.373G>T
  hgvsp: ENSP00000302544.4:p.Gly125Cys
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.396G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.431G>T
  hgvsp: ENSP00000306100.7:p.Arg144Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.271G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.472G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1430G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.431G>T
  hgvsp: ENSP00000314638.3:p.Arg144Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.431G>T
  hgvsp: ENSP00000282992.3:p.Arg144Leu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.431G>T
  hgvsp: ENSP00000396493.3:p.Arg144Leu
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg144Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

5-102260744-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260744
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260744
    reference: chr 5
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.382A>G
  hgvsp: ENSP00000302544.4:p.Lys128Glu
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.440A>G
  hgvsp: ENSP00000282992.3:p.Lys147Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.440A>G
  hgvsp: ENSP00000314638.3:p.Lys147Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.440A>G
  hgvsp: ENSP00000403461.2:p.Lys147Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.440A>G
  hgvsp: ENSP00000396493.3:p.Lys147Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.280A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.149A>G
  hgvsp: ENSP00000274392.9:p.Lys50Arg
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.481A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.405A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1421A>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.440A>G
  hgvsp: ENSP00000306100.7:p.Lys147Arg
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys147Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-102260761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260761
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260761
    reference: chr 5
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.442+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.442+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1419+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.151+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.442+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.384+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.483+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.442+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.407+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.282+15C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.442+15C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum

5-102260764-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260764
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260764
    reference: chr 5
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.442+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.151+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.483+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.442+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.282+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.442+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.384+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1419+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.407+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.442+18G>C
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.442+18G>C
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-102260771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260771
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260771
    reference: chr 5
allele count: 4
allele frequency: 3.308628904182107e-5
allele num: 120896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.282+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.483+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.442+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.442+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.384+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1419+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.442+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.151+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.442+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.442+25C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.407+25C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4620
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

5-102260775-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260775
    reference: chr 5
allele count: 1
allele frequency: 8.272530236098013e-6
allele num: 120882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.442+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.384+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.483+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.282+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.407+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.442+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.151+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.442+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.442+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1419+29T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.442+29T>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

5-102260781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102260781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102260781
    reference: chr 5
allele count: 3
allele frequency: 2.483032610494951e-5
allele num: 120820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.442+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.483+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.442+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.384+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.442+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.407+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1419+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.282+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.442+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.442+35G>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.151+35G>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

5-102262242-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102262242
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102262242
    reference: chr 5
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.385-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.484-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.443-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.408-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1418-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.443-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.443-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.152-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.443-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.443-47T>G
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.283-47T>G
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

5-102262251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102262251
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 102262251
    reference: chr 5
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000403461
  ensembl transcript: ENST00000455264
  gene symbol: PAM
  hgvsc: ENST00000455264.2:c.443-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000506260
  gene symbol: PAM
  hgvsc: ENST00000506260.1:n.283-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000274392
  ensembl transcript: ENST00000274392
  gene symbol: PAM
  hgvsc: ENST00000274392.9:c.152-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000306100
  ensembl transcript: ENST00000304400
  gene symbol: PAM
  hgvsc: ENST00000304400.7:c.443-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000314638
  ensembl transcript: ENST00000348126
  gene symbol: PAM
  hgvsc: ENST00000348126.2:c.443-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000282992
  ensembl transcript: ENST00000346918
  gene symbol: PAM
  hgvsc: ENST00000346918.2:c.443-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000509636
  gene symbol: PAM
  hgvsc: ENST00000509636.1:n.484-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000302544
  ensembl transcript: ENST00000345721
  gene symbol: PAM
  hgvsc: ENST00000345721.2:c.385-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000396493
  ensembl transcript: ENST00000438793
  gene symbol: PAM
  hgvsc: ENST00000438793.3:c.443-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl protein: ENSP00000369113
  ensembl transcript: ENST00000379787
  gene symbol: PAM
  hgvsc: ENST00000379787.4:c.-1418-38C>T
  variant of: http://identifiers.org/hgnc/8596
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145730
  ensembl transcript: ENST00000502472
  gene symbol: PAM
  hgvsc: ENST00000502472.1:n.408-38C>T
  variant of: http://identifiers.org/hgnc/8596
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4782
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.269035532994924e-4
allele num: 7880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 1.711e0

VQSLOD
type: SiteQuality
SIO_000300: -1.285e0

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.366e0

MQ
type: SiteQuality
SIO_000300: 5.658e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 1.553279e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 592
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.652034183039953e-5
allele num: 54764
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.349e1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

DP
type: SiteQuality
SIO_000300: 1.495834e6

GenotypeQuality
all individuals: 6575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.404691670178396e-4
allele num: 14238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.495834e6

QD
type: SiteQuality
SIO_000300: 1.349e1

GenotypeQuality
all individuals: 4746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5757
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4851
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7428
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.066780456582035e-4
allele num: 9374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.731534905047572e-5
allele num: 52342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.133e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

DP
type: SiteQuality
SIO_000300: 1.46559e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

GenotypeQuality
all individuals: 12492
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2745
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6956
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1774
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1051
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15642
bin: 9.75e1
variant carriers: 1719

GenotypeQuality
all individuals: 2179
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1727
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 5.75e1
variant carriers: 1

South Asian
type: Population
allele count: 19
allele frequency: 1.178075396825397e-3
allele num: 16128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1467
allele frequency: 2.222592570147264e-2
allele num: 66004
num of homozygotes: 15

Latino
type: Population
allele count: 92
allele frequency: 8.105726872246696e-3
allele num: 11350
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 3.866228494104001e-3
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 9.977827050997782e-3
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 126
allele frequency: 1.931922723091076e-2
allele num: 6522
num of homozygotes: 2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.508e0

DP
type: SiteQuality
SIO_000300: 2.186896e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.461e1

VQSLOD
type: SiteQuality
SIO_000300: 5.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

GenotypeQuality
all individuals: 523
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14390
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024528929619212e-5
allele num: 66126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 2.201581e6

GenotypeQuality
all individuals: 1803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.736e0

MQRankSum
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SIO_000300: 9.350000000000001e-1

DP
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SIO_000300: 2.216004e6

QD
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SIO_000300: 9.289999999999999e0

InbreedingCoeff
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SIO_000300: 4.6e-3

FS
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SIO_000300: 3.882e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: -6.483e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.927525057825752e-4
allele num: 10376
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.131207847946045e-5
allele num: 16310
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.307e0

VQSLOD
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SIO_000300: 1.0e0

FS
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SIO_000300: 2.687e0

ClippingRankSum
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SIO_000300: -2.85e-1

DP
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MQ
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QD
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MQRankSum
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SIO_000300: 6.14e-1

InbreedingCoeff
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SIO_000300: 1.06e-2

ReadPosRankSum
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SIO_000300: 6.879999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014408874419726e-5
allele num: 66348
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
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allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
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MQ
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SIO_000300: 5.961e1

QD
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 6.56e-1

VQSLOD
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SIO_000300: 2.88e0

InbreedingCoeff
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SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 2.239748e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
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SIO_000300: 2.239748e6

BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.3e-2

FS
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SIO_000300: 6.56e-1

MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.014408874419726e-5
allele num: 66348
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: -8.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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East Asian
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African
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allele num: 10394
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South Asian
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
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allele num: 10394
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East Asian
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Other
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South Asian
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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African
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Other
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 3.008785654110001e-5
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ReadPosRankSum
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MQRankSum
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 6.0e1

VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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African
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DP
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 66486
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Latino
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Other
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ReadPosRankSum
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SIO_000300: 9.87e-1

InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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FS
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QD
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BaseQRankSum
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DP
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SIO_000300: 2.243388e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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allele num: 66510
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Latino
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MQRankSum
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SIO_000300: 1.42e0

InbreedingCoeff
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MQ
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DP
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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ClippingRankSum
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FS
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VQSLOD
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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Other
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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Other
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FS
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.714e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

DP
type: SiteQuality
SIO_000300: 2.244047e6

MQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeDepth
all individuals: 2317
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 14394
bin: 9.75e1
variant carriers: 14

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3981
bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.619995371441796e-3
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

QD
type: SiteQuality
SIO_000300: 1.133e1

DP
type: SiteQuality
SIO_000300: 2.243882e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3264
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variant carriers: 0

GenotypeQuality
all individuals: 14383
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.512906913773392e-5
allele num: 66476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

FS
type: SiteQuality
SIO_000300: 6.3e0

DP
type: SiteQuality
SIO_000300: 2.242972e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21356
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variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

DP
type: SiteQuality
SIO_000300: 2.24128e6

QD
type: SiteQuality
SIO_000300: 1.338e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.31e-1

GenotypeDepth
all individuals: 347
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variant carriers: 0

GenotypeDepth
all individuals: 469
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variant carriers: 1

GenotypeDepth
all individuals: 347
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505208019748329e-5
allele num: 66436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

VQSLOD
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SIO_000300: -2.781e0

DP
type: SiteQuality
SIO_000300: 2.24115e6

QD
type: SiteQuality
SIO_000300: 1.21e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.304e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 1.2338e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeDepth
all individuals: 674
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
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variant carriers: 0

GenotypeQuality
all individuals: 7679
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GenotypeQuality
all individuals: 1811
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011050555538827e-5
allele num: 66422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
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VQSLOD
type: SiteQuality
SIO_000300: -3.236e-1

MQRankSum
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MQ
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QD
type: SiteQuality
SIO_000300: 1.028e1

ReadPosRankSum
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SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.744999999999999e0

DP
type: SiteQuality
SIO_000300: 2.239963e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

GenotypeQuality
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variant carriers: 342

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4817
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variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012411133871551e-5
allele num: 66392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 340
allele frequency: 2.067120622568093e-2
allele num: 16448
num of homozygotes: 8

Latino
type: Population
allele count: 3
allele frequency: 2.620545073375262e-4
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.424778761061947e-3
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 2.246128e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.22e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2829
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GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
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European (Finnish)
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
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SIO_000300: 2.2e-1

ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92789666473877e-4
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

QD
type: SiteQuality
SIO_000300: 1.523e1

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

DP
type: SiteQuality
SIO_000300: 2.223484e6

GenotypeQuality
all individuals: 4778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.737317581653926e-3
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.22307e6

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

QD
type: SiteQuality
SIO_000300: 1.819e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.737720111214087e-3
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

DP
type: SiteQuality
SIO_000300: 2.222139e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 3.636e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.873e1

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

QD
type: SiteQuality
SIO_000300: 1.873e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 3.636e0

DP
type: SiteQuality
SIO_000300: 2.222139e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016409266409266e-5
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.220456e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.541e1

FS
type: SiteQuality
SIO_000300: 3.177e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 123

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 999
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 125
allele frequency: 7.62939453125e-3
allele num: 16384
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.199537e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.553e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 14352
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.522e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.407e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4653
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GenotypeQuality
all individuals: 1793
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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SIO_000300: 4.38e-1

ReadPosRankSum
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DP
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SIO_000300: 2.18293e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 9.41e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8512
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10270
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -4.046e0

DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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FS
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SIO_000300: 0.0e0

MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506931886678722e-5
allele num: 66360
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.596e0

InbreedingCoeff
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QD
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SIO_000300: 2.261e1

MQRankSum
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ClippingRankSum
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SIO_000300: 2.6e-1

MQ
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.014787e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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QD
type: SiteQuality
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DP
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11556
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

Other
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African
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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allele num: 66636
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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FS
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
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GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4632
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.001710324961742e-5
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.595e0

FS
type: SiteQuality
SIO_000300: 5.422e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 2.037213e6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13281
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7569
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.77e-1

MQ
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SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.037598e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-1

FS
type: SiteQuality
SIO_000300: 7.108e0

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 2.05e0

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.574e0

QD
type: SiteQuality
SIO_000300: 1.008e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 2.039559e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeDepth
all individuals: 6490
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variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7578
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 2.039555e6

BaseQRankSum
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SIO_000300: -1.448e0

QD
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SIO_000300: 1.348e1

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQRankSum
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SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.098e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.03e-1

GenotypeDepth
all individuals: 434
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
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MQ
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SIO_000300: 5.967e1

BaseQRankSum
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QD
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SIO_000300: 1.402e1

MQRankSum
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 2.039547e6

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 5.917e1

ClippingRankSum
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SIO_000300: -9.84e-1

FS
type: SiteQuality
SIO_000300: 9.8e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13284
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.910925674364448e-4
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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DP
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QD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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DP
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MQ
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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European (Non-Finnish)
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MQ
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DP
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ReadPosRankSum
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South Asian
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European (Non-Finnish)
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East Asian
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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Latino
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South Asian
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MQRankSum
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DP
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FS
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BaseQRankSum
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SIO_000300: -3.239e0

QD
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SIO_000300: 1.296e1

VQSLOD
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SIO_000300: 6.41e-1

ClippingRankSum
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SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 29
allele frequency: 3.351826167360148e-3
allele num: 8652
num of homozygotes: 2

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
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South Asian
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allele frequency: 1.211387038158692e-4
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ReadPosRankSum
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SIO_000300: 2.82e-1

FS
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 5.19e-2

DP
type: SiteQuality
SIO_000300: 2.038546e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.964e1

ReadPosRankSum
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SIO_000300: 2.82e-1

VQSLOD
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DP
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FS
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 5.19e-2

BaseQRankSum
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SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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QD
type: SiteQuality
SIO_000300: 1.119e1

MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
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SIO_000300: 2.035905e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66710
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ReadPosRankSum
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 8.64902266043937e-5
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European (Finnish)
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VQSLOD
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DP
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MQ
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ClippingRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8636
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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FS
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13280
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5427
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004823151125402e-4
allele num: 9952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000030000300003e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.024405e6

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.136e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

FS
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.453e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29134
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.89e-1

FS
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.597e1

DP
type: SiteQuality
SIO_000300: 2.631454e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0