http://identifiers.org/exac.variant/10-81319415-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319415
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319415
    reference: chr 10
allele count: 1
allele frequency: 3.579354284487079e-5
allele num: 27938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-153T>G
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-153T>G
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-153T>G
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-176T>G
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25679
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4515
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-81319418-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319418
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319418
    reference: chr 10
allele count: 1
allele frequency: 3.813882532418002e-5
allele num: 26220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-179G>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-156G>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-156G>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-156G>T
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23559
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

10-81319423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319423
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319423
    reference: chr 10
allele count: 25733
allele frequency: 9.482275775665119e-1
allele num: 27138
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-184G>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.75e1
  variant carriers: 1331
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 1384
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 1145
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.25e1
  variant carriers: 1025
genotype depth: GenotypeDepth
  all individuals: 14858
  bin: 2.5e0
  variant carriers: 13843
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 511
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 1257
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 1.25e1
  variant carriers: 3085
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 17641
  bin: 7.5e0
  variant carriers: 17076
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 725
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 2.75e1
  variant carriers: 1369
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 9.25e1
  variant carriers: 630
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.75e1
  variant carriers: 539
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.75e1
  variant carriers: 1602
genotype quality: GenotypeQuality
  all individuals: 6421
  bin: 1.25e1
  variant carriers: 6412
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.25e1
  variant carriers: 572
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 2.5e0
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.75e1
  variant carriers: 383
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.25e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 7.5e0
  variant carriers: 7094
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.75e1
  variant carriers: 386
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 6.25e1
  variant carriers: 580
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 877
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 1719
genotype quality: GenotypeQuality
  all individuals: 9507
  bin: 1.75e1
  variant carriers: 9505
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.75e1
  variant carriers: 576
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.25e1
  variant carriers: 316
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 9.75e1
  variant carriers: 6480
num of homozygotes: 12210
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-81319424-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319424
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319424
    reference: chr 10
allele count: 2
allele frequency: 8.819119851838787e-5
allele num: 22678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-185G>C
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-162G>C
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-162G>C
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-162G>C
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29448
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29838
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

10-81319429-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319429
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319429
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 22244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-190T>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-167T>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-167T>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-167T>A
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29290
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29341
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS

10-81319432-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319432
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319432
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-193A>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-170A>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-170A>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-170A>T
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28492
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28431
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

10-81319433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319433
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319433
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-194C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-171C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-171C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-171C>T
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28607
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28590
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

10-81319439-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319439
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319439
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-177C>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-177C>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-177C>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-200C>A
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26481
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26067
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

10-81319446-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319446
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319446
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-184C>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-207C>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-184C>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-184C>A
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23126
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22349
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

10-81319458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319458
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319458
    reference: chr 10
allele count: 5219
allele frequency: 2.585967693984739e-1
allele num: 20182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-219G>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 721
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 7.5e0
  variant carriers: 1065
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 13876
  bin: 2.5e0
  variant carriers: 1372
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.75e1
  variant carriers: 679
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 1.25e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.25e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 6.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 9.75e1
  variant carriers: 3627
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 1.25e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 2.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 2.25e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 10955
  bin: 7.5e0
  variant carriers: 711
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.75e1
  variant carriers: 357
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.75e1
  variant carriers: 151
num of homozygotes: 718
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

10-81319459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319459
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319459
    reference: chr 10
allele count: 1
allele frequency: 5.017057997190448e-5
allele num: 19932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-220C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/10-81319480-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319480
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319480
    reference: chr 10
allele count: 26
allele frequency: 1.382390472139515e-3
allele num: 18808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-218T>G
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-218T>G
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-241T>G
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-218T>G
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7717
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

10-81319483-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319483
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319483
    reference: chr 10
allele count: 18488
allele frequency: 9.399084900864261e-1
allele num: 19670
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-221T>C
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-244T>C
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-221T>C
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-221T>C
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.75e1
  variant carriers: 2076
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 1881
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 1222
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.5e0
  variant carriers: 3933
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.5e0
  variant carriers: 1817
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.25e1
  variant carriers: 725
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.25e1
  variant carriers: 1908
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 1.75e1
  variant carriers: 844
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 402
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 6.25e1
  variant carriers: 833
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 393
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.25e1
  variant carriers: 414
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.25e1
  variant carriers: 293
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 1034
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.5e0
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 4.75e1
  variant carriers: 811
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 641
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 5.25e1
  variant carriers: 809
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 411
genotype quality: GenotypeQuality
  all individuals: 2967
  bin: 9.75e1
  variant carriers: 2953
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 3.75e1
  variant carriers: 725
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 7.5e0
  variant carriers: 2617
num of homozygotes: 8716
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

10-81319489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81319489
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81319489
    reference: chr 10
allele count: 17
allele frequency: 9.372587936927997e-4
allele num: 18138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000473275
  ensembl transcript: ENST00000492049
  gene symbol: SFTPA2
  hgvsc: ENST00000492049.1:c.-250C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361402
  ensembl transcript: ENST00000372327
  gene symbol: SFTPA2
  hgvsc: ENST00000372327.5:c.-23-227C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000361400
  ensembl transcript: ENST00000372325
  gene symbol: SFTPA2
  hgvsc: ENST00000372325.2:c.-23-227C>T
  variant of: http://identifiers.org/hgnc/10799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185303
  ensembl protein: ENSP00000397375
  ensembl transcript: ENST00000417041
  gene symbol: SFTPA2
  hgvsc: ENST00000417041.1:c.-23-227C>T
  variant of: http://identifiers.org/hgnc/10799
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

10-81371341-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371341
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371341
    reference: chr 10
allele count: 4171
allele frequency: 2.04681519285504e-1
allele num: 20378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-80G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+603G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.-35G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.29G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-24+196G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-218G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-218G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-24+196G>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.25e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 21556
  bin: 2.5e0
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 2.25e1
  variant carriers: 663
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.5e0
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 653
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 6.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 2.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 83
num of homozygotes: 494
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

10-81371362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371362
    reference: chr 10
allele count: 5
allele frequency: 2.405465216972963e-4
allele num: 20786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+624C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-59C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.50C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.-14C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-197C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS

10-81371363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371363
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371363
    reference: chr 10
allele count: 4
allele frequency: 1.929570670525808e-4
allele num: 20730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-58G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.51G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.-13G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+625G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-196G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25323
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

10-81371385-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371385
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371385
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-174T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.73T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+647T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-174T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.10T>C
  hgvsp: ENSP00000397082.2:p.Cys4Arg
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-36T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-174T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-174T>C
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30003
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys4Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

10-81371394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371394
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371394
    reference: chr 10
allele count: 4
allele frequency: 1.832844574780059e-4
allele num: 21824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-165C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-165C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-165C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.82C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-27C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.19C>T
  hgvsp: ENSP00000397082.2:p.Pro7Ser
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+656C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-165C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 30443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro7Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

10-81371398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371398
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371398
    reference: chr 10
allele count: 21
allele frequency: 9.579417936319679e-4
allele num: 21922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.86G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+1G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+660G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+1G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-161G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31038
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12016
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29407
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 4
hgvs: c.22+1G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

10-81371402-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371402
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371402
    reference: chr 10
allele count: 1
allele frequency: 4.417351356126866e-5
allele num: 22638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.90T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+664T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-157T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-157T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-157T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-157T>A
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29766
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.5e0
  variant carriers: 0
hgvs: c.22+5T>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

10-81371402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371402
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371402
    reference: chr 10
allele count: 1
allele frequency: 4.417351356126866e-5
allele num: 22638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-157T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-157T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.90T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+664T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-157T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-157T>C
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
hgvs: c.22+5T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

10-81371403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371403
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371403
    reference: chr 10
allele count: 1
allele frequency: 4.398697985396323e-5
allele num: 22734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-156G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-156G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+6G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.91G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-156G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-6+665G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+6G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-156G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29406
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
hgvs: c.22+6G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

10-81371406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371406
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371406
    reference: chr 10
allele count: 6
allele frequency: 2.619858527639508e-4
allele num: 22902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-153G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-662G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+9G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-153G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-153G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.94G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-153G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+9G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 28095
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26841
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 9
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

10-81371406-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371406
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371406
    reference: chr 10
allele count: 18
allele frequency: 7.859575582918522e-4
allele num: 22902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-153G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-153G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-153G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+9G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.94G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-662G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-153G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+9G>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28095
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26841
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

10-81371410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371410
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371410
    reference: chr 10
allele count: 1
allele frequency: 4.25531914893617e-5
allele num: 23500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-658A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+13A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-149A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-149A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.98A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-149A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-149A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+13A>G
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

10-81371415-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371415
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371415
    reference: chr 10
allele count: 2
allele frequency: 8.338892595063375e-5
allele num: 23984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-144C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-653C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+18C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-144C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.103C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-144C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-144C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+18C>G
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19482
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

10-81371415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371415
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371415
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 23984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.103C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-144C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-144C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-653C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-144C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-144C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 23862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21555
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4812
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-81371417-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371417
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371417
    reference: chr 10
allele count: 4
allele frequency: 1.636929120969062e-4
allele num: 24436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-651C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-142C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.105C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-142C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-142C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-142C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22978
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-81371418-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371418
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371418
    reference: chr 10
allele count: 1
allele frequency: 3.987558816492543e-5
allele num: 25078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-141G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-141G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.106G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+21G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+21G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-141G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-650G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-141G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21147
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

10-81371418-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371418
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371418
    reference: chr 10
allele count: 1
allele frequency: 3.987558816492543e-5
allele num: 25078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-141G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+21G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+21G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-141G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.106G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-650G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-141G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-141G>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS

10-81371421-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371421
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371421
    reference: chr 10
allele count: 3259
allele frequency: 1.152730616864742e-1
allele num: 28272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-138A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-138A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.109A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-138A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+24A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+24A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-647A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-138A>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 2.25e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 26402
  bin: 7.5e0
  variant carriers: 2432
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 1.25e1
  variant carriers: 1356
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 16674
  bin: 2.5e0
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 435
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.75e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 9.75e1
  variant carriers: 2286
genotype quality: GenotypeQuality
  all individuals: 20532
  bin: 2.25e1
  variant carriers: 233
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 14879
  bin: 7.5e0
  variant carriers: 179
genotype quality: GenotypeQuality
  all individuals: 4592
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 7.25e1
  variant carriers: 300
num of homozygotes: 143
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

10-81371422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371422
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371422
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 29762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-137G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+25G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-137G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+25G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.110G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-646G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-137G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-137G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26710
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15922
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-81371427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371427
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371427
    reference: chr 10
allele count: 1
allele frequency: 3.204306588054345e-5
allele num: 31208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-132G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-132G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.115G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-641G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-132G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+30G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-132G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+30G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

10-81371428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371428
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371428
    reference: chr 10
allele count: 2
allele frequency: 6.289703754953141e-5
allele num: 31798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-131G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+31G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.116G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-131G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-131G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-640G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+31G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-131G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28904
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

10-81371431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371431
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371431
    reference: chr 10
allele count: 3
allele frequency: 9.09090909090909e-5
allele num: 33000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+34C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-637C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-128C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-128C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+34C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-128C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.119C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-128C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29686
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

10-81371432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371432
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371432
    reference: chr 10
allele count: 1
allele frequency: 2.987214720994145e-5
allele num: 33476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-636T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-127T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-127T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.120T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-127T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+35T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+35T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-127T>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

10-81371446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371446
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371446
    reference: chr 10
allele count: 1
allele frequency: 2.541683611224075e-5
allele num: 39344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-113G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-113G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-24+49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-113G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-622G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-113G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.22+49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.134G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

10-81371509-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371509
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371509
    reference: chr 10
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.197G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-50G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-50G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-50G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-50G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-50G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-50G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-559G>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

10-81371510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371510
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371510
    reference: chr 10
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-49G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-558G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.198G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-49G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

10-81371510-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371510
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371510
    reference: chr 10
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-49G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-49G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-49G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-49G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-49G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-558G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.198G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-49G>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

10-81371514-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371514
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371514
    reference: chr 10
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-45T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.202T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-45T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-45T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-45T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-45T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-554T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-45T>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36085
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

10-81371515-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371515
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371515
    reference: chr 10
allele count: 2
allele frequency: 1.653411815280832e-5
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-44G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-44G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-553G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-44G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.203G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-44G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-44G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-44G>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36083
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

10-81371516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371516
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371516
    reference: chr 10
allele count: 2
allele frequency: 1.653193142554845e-5
allele num: 120978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-43T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.204T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-43T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-43T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-43T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-43T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-43T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-552T>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

10-81371519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371519
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371519
    reference: chr 10
allele count: 89
allele frequency: 7.356344640613635e-4
allele num: 120984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-549G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-40G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-40G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-40G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-40G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-40G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.207G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-40G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8040
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36153
  bin: 9.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

10-81371522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371522
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371522
    reference: chr 10
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-37G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-37G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-37G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-37G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.210G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-37G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-37G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-546G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

10-81371524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371524
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371524
    reference: chr 10
allele count: 1
allele frequency: 8.260093834665961e-6
allele num: 121064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-35G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-544G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.212G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-35G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-35G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-35G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-35G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-35G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36154
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-81371525-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371525
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371525
    reference: chr 10
allele count: 37
allele frequency: 3.055881332694627e-4
allele num: 121078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-34G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.213G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-34G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-34G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-34G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-34G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-34G>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-543G>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

10-81371526-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371526
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371526
    reference: chr 10
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-33T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-33T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-33T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-542T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-33T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-33T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-33T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.214T>G
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

10-81371529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371529
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371529
    reference: chr 10
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.217C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-30C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-30C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-30C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-539C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-30C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-30C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-30C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-81371530-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371530
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371530
    reference: chr 10
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-29A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-29A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-29A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.218A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-29A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-538A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-29A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-29A>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

10-81371532-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371532
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371532
    reference: chr 10
allele count: 73
allele frequency: 6.022009206249691e-4
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-27A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-27A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-27A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.220A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-536A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-27A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-27A>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-27A>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

10-81371535-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371535
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371535
    reference: chr 10
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.223G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-24G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-533G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-24G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-24G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-24G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-24G>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-24G>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-81371539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371539
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371539
    reference: chr 10
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.227C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-529C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-20C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

10-81371540-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371540
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371540
    reference: chr 10
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-19A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-19A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-19A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.228A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-528A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-19A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-19A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-19A>G
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7340
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/10-81371541-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371541
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371541
    reference: chr 10
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-18C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-18C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-18C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.229C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-527C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-18C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-18C>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-18C>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

10-81371541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371541
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371541
    reference: chr 10
allele count: 3
allele frequency: 2.472513887286333e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-527C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.229C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-18C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-18C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36288
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

10-81371542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371542
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371542
    reference: chr 10
allele count: 3
allele frequency: 2.472147142197904e-5
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-17G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-17G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-17G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.230G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-526G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-17G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-17G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-17G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/10-81371546-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371546
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371546
    reference: chr 10
allele count: 158
allele frequency: 1.301761497520062e-3
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.234A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-13A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-13A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-13A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-522A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-13A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-13A>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-13A>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 9.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 3
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

10-81371546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371546
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371546
    reference: chr 10
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-13A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.234A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-13A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-13A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-13A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-522A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-13A>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-13A>G
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36359
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

10-81371547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371547
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371547
    reference: chr 10
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.235T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-12T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-12T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-521T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-12T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-12T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-12T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-12T>C
  variant of: http://identifiers.org/hgnc/10798
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36316
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

10-81371551-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371551
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371551
    reference: chr 10
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-8T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-8T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-8T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.239T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-8T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-517T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-8T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-8T>G
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 7.75e1
  variant carriers: 0
hgvs: c.23-8T>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-81371553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371553
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371553
    reference: chr 10
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-6C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-6C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-6C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-6C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-6C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.241C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-515C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-6C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36324
  bin: 9.75e1
  variant carriers: 3
hgvs: c.23-6C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

10-81371554-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371554
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371554
    reference: chr 10
allele count: 38070
allele frequency: 3.380094113468881e-1
allele num: 112630
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.242T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-5T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-514T>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-5T>A
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 755
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.25e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 640
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 825
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 423
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 687
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 972
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 787
genotype depth: GenotypeDepth
  all individuals: 37721
  bin: 9.75e1
  variant carriers: 32799
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.25e1
  variant carriers: 314
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.5e0
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 355
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 7.75e1
  variant carriers: 402
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 336
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.75e1
  variant carriers: 325
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 2.5e0
  variant carriers: 250
hgvs: c.23-5T>A
num of homozygotes: 2
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-81371554-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371554
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371554
    reference: chr 10
allele count: 1
allele frequency: 8.878629139660836e-6
allele num: 112630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.242T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-5T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-514T>C
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-5T>C
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37721
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
hgvs: c.23-5T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

10-81371554-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371554
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371554
    reference: chr 10
allele count: 210
allele frequency: 1.864512119328776e-3
allele num: 112630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-23-5T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-23-5T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.242T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-23-5T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.23-5T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-23-5T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-23-5T>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-514T>G
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37721
  bin: 9.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 6.25e1
  variant carriers: 1
hgvs: c.23-5T>G
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

10-81371562-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371562
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371562
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-20C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.250C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-20C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-20C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-506C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-20C>G
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.26C>G
  hgvsp: ENSP00000397082.2:p.Ala9Gly
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-20C>G
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala9Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

10-81371562-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371562
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371562
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-506C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.26C>T
  hgvsp: ENSP00000397082.2:p.Ala9Val
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.250C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala9Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

10-81371565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371565
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371565
    reference: chr 10
allele count: 6
allele frequency: 4.942013705851344e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-503C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-17C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.29C>T
  hgvsp: ENSP00000397082.2:p.Ala10Val
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.253C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39472
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala10Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

10-81371566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371566
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371566
    reference: chr 10
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-502G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.254G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-16G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-16G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-16G>A
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.30G>A
  hgvsp: ENST00000419470.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12205
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ala10Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

10-81371568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371568
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371568
    reference: chr 10
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-500C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-14C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.32C>T
  hgvsp: ENSP00000397082.2:p.Thr11Ile
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-14C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-14C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.256C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12203
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr11Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

10-81371573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81371573
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 81371573
    reference: chr 10
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000401649
  ensembl transcript: ENST00000439264
  gene symbol: SFTPA1
  hgvsc: ENST00000439264.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361387
  ensembl transcript: ENST00000372313
  gene symbol: SFTPA1
  hgvsc: ENST00000372313.5:c.-5-495C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000395527
  ensembl transcript: ENST00000429958
  gene symbol: SFTPA1
  hgvsc: ENST00000429958.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000411102
  ensembl transcript: ENST00000428376
  gene symbol: SFTPA1
  hgvsc: ENST00000428376.2:c.-9C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000397082
  ensembl transcript: ENST00000419470
  gene symbol: SFTPA1
  hgvsc: ENST00000419470.2:c.37C>T
  hgvsp: ENSP00000397082.2:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000361382
  ensembl transcript: ENST00000372308
  gene symbol: SFTPA1
  hgvsc: ENST00000372308.3:c.-9C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000122852
  ensembl transcript: ENST00000486922
  gene symbol: SFTPA1
  hgvsc: ENST00000486922.1:n.261C>T
  variant of: http://identifiers.org/hgnc/10798
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122852
  ensembl protein: ENSP00000381633
  ensembl transcript: ENST00000398636
  gene symbol: SFTPA1
  hgvsc: ENST00000398636.3:c.-9C>T
  variant of: http://identifiers.org/hgnc/10798
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro13Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.293946024799416e-5
allele num: 13710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.761e0

DP
type: SiteQuality
SIO_000300: 5.55677e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 9.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.345e0

MQ
type: SiteQuality
SIO_000300: 5.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.25093820365274e-4
allele num: 7994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.49e0

MQ
type: SiteQuality
SIO_000300: 3.034e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 5.4753e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.021e0

QD
type: SiteQuality
SIO_000300: 3.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 599

GenotypeQuality
all individuals: 594
bin: 6.75e1
variant carriers: 587

GenotypeQuality
all individuals: 5190
bin: 2.25e1
variant carriers: 5169

Other
type: Population
allele count: 254
allele frequency: 9.338235294117647e-1
allele num: 272
num of homozygotes: 119

South Asian
type: Population
allele count: 8135
allele frequency: 9.728533843578091e-1
allele num: 8362
num of homozygotes: 3960

European (Non-Finnish)
type: Population
allele count: 12046
allele frequency: 9.47608558842039e-1
allele num: 12712
num of homozygotes: 5705

African
type: Population
allele count: 2350
allele frequency: 8.646063281824872e-1
allele num: 2718
num of homozygotes: 1010

Latino
type: Population
allele count: 680
allele frequency: 9.6045197740113e-1
allele num: 708
num of homozygotes: 327

East Asian
type: Population
allele count: 930
allele frequency: 9.935897435897436e-1
allele num: 936
num of homozygotes: 462

European (Finnish)
type: Population
allele count: 1338
allele frequency: 9.356643356643357e-1
allele num: 1430
num of homozygotes: 627

QD
type: SiteQuality
SIO_000300: 3.089e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 4.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.172e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 6.19927e5

VQSLOD
type: SiteQuality
SIO_000300: 1.763e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 1838
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.539360081259522e-4
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 3.694e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.53661e5

VQSLOD
type: SiteQuality
SIO_000300: -6.142e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

GenotypeQuality
all individuals: 1829
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.042e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.727e0

DP
type: SiteQuality
SIO_000300: 4.43764e5

MQ
type: SiteQuality
SIO_000300: 2.9e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

MQ
type: SiteQuality
SIO_000300: 3.7e1

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

DP
type: SiteQuality
SIO_000300: 4.32433e5

GenotypeQuality
all individuals: 391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.45e1

VQSLOD
type: SiteQuality
SIO_000300: -2.663e-1

DP
type: SiteQuality
SIO_000300: 4.32207e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.6e1

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

DP
type: SiteQuality
SIO_000300: 4.13163e5

VQSLOD
type: SiteQuality
SIO_000300: -1.448e0

FS
type: SiteQuality
SIO_000300: 2.331e0

MQ
type: SiteQuality
SIO_000300: 4.502e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.742e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.79e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.399e0

FS
type: SiteQuality
SIO_000300: 8.509e0

QD
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.28e-1

DP
type: SiteQuality
SIO_000300: 3.93182e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 96

GenotypeQuality
all individuals: 659
bin: 6.75e1
variant carriers: 124

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 104

African
type: Population
allele count: 420
allele frequency: 2.030947775628627e-1
allele num: 2068
num of homozygotes: 40

East Asian
type: Population
allele count: 292
allele frequency: 4.332344213649852e-1
allele num: 674
num of homozygotes: 64

European (Non-Finnish)
type: Population
allele count: 2010
allele frequency: 2.380388441496921e-1
allele num: 8444
num of homozygotes: 247

European (Finnish)
type: Population
allele count: 193
allele frequency: 2.725988700564972e-1
allele num: 708
num of homozygotes: 19

Latino
type: Population
allele count: 94
allele frequency: 2.146118721461187e-1
allele num: 438
num of homozygotes: 9

Other
type: Population
allele count: 58
allele frequency: 2.871287128712871e-1
allele num: 202
num of homozygotes: 8

South Asian
type: Population
allele count: 2152
allele frequency: 2.813807531380753e-1
allele num: 7648
num of homozygotes: 331

FS
type: SiteQuality
SIO_000300: 1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.121e-1

MQ
type: SiteQuality
SIO_000300: 4.311e1

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 3.75082e5

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.201345506967804e-4
allele num: 8324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 3.915e1

DP
type: SiteQuality
SIO_000300: 3.4671e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.18e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.988e0

QD
type: SiteQuality
SIO_000300: 1.893e1

GenotypeQuality
all individuals: 263
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 512
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 3.507014028056112e-3
allele num: 1996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 1.983635011157947e-3
allele num: 8066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.325581395348837e-3
allele num: 430
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.857959416976279e-4
allele num: 6998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

FS
type: SiteQuality
SIO_000300: 2.966e0

MQ
type: SiteQuality
SIO_000300: 4.311e1

QD
type: SiteQuality
SIO_000300: 4.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.62e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 3.07308e5

GenotypeQuality
all individuals: 473
bin: 7.75e1
variant carriers: 469

GenotypeQuality
all individuals: 668
bin: 6.75e1
variant carriers: 661

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 681

European (Non-Finnish)
type: Population
allele count: 7950
allele frequency: 9.423897581792319e-1
allele num: 8436
num of homozygotes: 3747

African
type: Population
allele count: 1704
allele frequency: 8.037735849056604e-1
allele num: 2120
num of homozygotes: 682

Other
type: Population
allele count: 189
allele frequency: 9.356435643564357e-1
allele num: 202
num of homozygotes: 89

East Asian
type: Population
allele count: 655
allele frequency: 9.984756097560976e-1
allele num: 656
num of homozygotes: 327

South Asian
type: Population
allele count: 7060
allele frequency: 9.719162995594713e-1
allele num: 7264
num of homozygotes: 3434

Latino
type: Population
allele count: 409
allele frequency: 9.467592592592593e-1
allele num: 432
num of homozygotes: 195

European (Finnish)
type: Population
allele count: 521
allele frequency: 9.303571428571429e-1
allele num: 560
num of homozygotes: 242

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 4.094e1

VQSLOD
type: SiteQuality
SIO_000300: 4.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.506e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.798e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 2.048e0

QD
type: SiteQuality
SIO_000300: 2.965e1

DP
type: SiteQuality
SIO_000300: 3.13754e5

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 13

African
type: Population
allele count: 17
allele frequency: 8.21256038647343e-3
allele num: 2070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.681e0

DP
type: SiteQuality
SIO_000300: 2.74666e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

FS
type: SiteQuality
SIO_000300: 2.059e0

VQSLOD
type: SiteQuality
SIO_000300: -8.315e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.66e-2

QD
type: SiteQuality
SIO_000300: 1.027e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 4.223e1

GenotypeQuality
all individuals: 2395
bin: 6.25e1
variant carriers: 98

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 62

GenotypeQuality
all individuals: 13299
bin: 7.5e0
variant carriers: 264

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 39

GenotypeQuality
all individuals: 8635
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 4286
bin: 9.75e1
variant carriers: 3107

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 67

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 54

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 29

GenotypeQuality
all individuals: 380
bin: 7.75e1
variant carriers: 83

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 73

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 65

East Asian
type: Population
allele count: 178
allele frequency: 2.664670658682635e-1
allele num: 668
num of homozygotes: 26

African
type: Population
allele count: 315
allele frequency: 1.481655691439323e-1
allele num: 2126
num of homozygotes: 33

South Asian
type: Population
allele count: 1885
allele frequency: 2.449324324324324e-1
allele num: 7696
num of homozygotes: 250

European (Finnish)
type: Population
allele count: 96
allele frequency: 1.732851985559567e-1
allele num: 554
num of homozygotes: 6

Latino
type: Population
allele count: 135
allele frequency: 3.0e-1
allele num: 450
num of homozygotes: 20

European (Non-Finnish)
type: Population
allele count: 1526
allele frequency: 1.757254721326578e-1
allele num: 8684
num of homozygotes: 154

Other
type: Population
allele count: 36
allele frequency: 1.8e-1
allele num: 200
num of homozygotes: 5

QD
type: SiteQuality
SIO_000300: 1.246e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.849e-1

DP
type: SiteQuality
SIO_000300: 3.96781e5

MQ
type: SiteQuality
SIO_000300: 4.929e1

MQRankSum
type: SiteQuality
SIO_000300: -2.617e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.816793893129771e-4
allele num: 7860
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.212389380530973e-3
allele num: 452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.13947128532361e-4
allele num: 8776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.13e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.043e-1

MQ
type: SiteQuality
SIO_000300: 5.718e1

DP
type: SiteQuality
SIO_000300: 4.05982e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

FS
type: SiteQuality
SIO_000300: 5.31e-1

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.547770700636942e-4
allele num: 7850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.279462046956918e-4
allele num: 8774
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 4.10531e5

MQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
SIO_000300: -2.693e-1

QD
type: SiteQuality
SIO_000300: 3.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.190000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 4.608e0

MQ
type: SiteQuality
SIO_000300: 4.864e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 4.54194e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.950000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.022601707684581e-4
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

FS
type: SiteQuality
SIO_000300: 2.051e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.041e1

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

DP
type: SiteQuality
SIO_000300: 4.81415e5

VQSLOD
type: SiteQuality
SIO_000300: -9.281e-1

MQ
type: SiteQuality
SIO_000300: 5.765e1

GenotypeQuality
all individuals: 4843
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9909
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 11

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 3

Latino
type: Population
allele count: 3
allele frequency: 5.747126436781609e-3
allele num: 522
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.747252747252747e-3
allele num: 728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 3.862660944206008e-3
allele num: 2330
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.509410288582183e-4
allele num: 7970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.23998304006784e-4
allele num: 9434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.377410468319559e-3
allele num: 726
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.005e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.798e0

FS
type: SiteQuality
SIO_000300: 6.253e0

MQ
type: SiteQuality
SIO_000300: 4.678e1

DP
type: SiteQuality
SIO_000300: 4.99163e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

QD
type: SiteQuality
SIO_000300: 4.44e0

GenotypeQuality
all individuals: 554
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 59
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GenotypeQuality
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GenotypeQuality
all individuals: 28337
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GenotypeQuality
all individuals: 1094
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12017
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GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.184100418410042e-4
allele num: 2390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.516e1

FS
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.226e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.47e-2

DP
type: SiteQuality
SIO_000300: 5.1409e5

QD
type: SiteQuality
SIO_000300: 1.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 442
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GenotypeQuality
all individuals: 554
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GenotypeQuality
all individuals: 12017
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GenotypeQuality
all individuals: 1775
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GenotypeQuality
all individuals: 1094
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GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 4879
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GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 512
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.239157372986369e-4
allele num: 8070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.226e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.47e-2

MQ
type: SiteQuality
SIO_000300: 5.516e1

DP
type: SiteQuality
SIO_000300: 5.1409e5

QD
type: SiteQuality
SIO_000300: 1.477e1

GenotypeQuality
all individuals: 28092
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variant carriers: 0

GenotypeQuality
all individuals: 223
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1775
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.173622704507513e-4
allele num: 2396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.59e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.18407e5

MQ
type: SiteQuality
SIO_000300: 5.616e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 76
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 355
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variant carriers: 2

GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 1227
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.471169686985173e-3
allele num: 2428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQ
type: SiteQuality
SIO_000300: 5.005e1

VQSLOD
type: SiteQuality
SIO_000300: -2.345e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.31762e5

QD
type: SiteQuality
SIO_000300: 6.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.754e0

GenotypeQuality
all individuals: 1762
bin: 9.75e1
variant carriers: 12

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 435
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GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 96
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variant carriers: 2

GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 571
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.472799208704253e-4
allele num: 8088
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.584229390681004e-3
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.004805766920304e-4
allele num: 9988
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 3.294892915980231e-3
allele num: 2428
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.285347043701799e-3
allele num: 778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.187648456057007e-3
allele num: 842
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.345e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

DP
type: SiteQuality
SIO_000300: 5.31762e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.33e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.005e1

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.221896383186706e-4
allele num: 8184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.835e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e-1

MQ
type: SiteQuality
SIO_000300: 5.497e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 5.45296e5

GenotypeQuality
all individuals: 969
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22977
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2520
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.352941176470588e-3
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.179e-1

DP
type: SiteQuality
SIO_000300: 5.65639e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 4.786e1

QD
type: SiteQuality
SIO_000300: 1.623e1

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.65639e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 4.786e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.179e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.623e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.564945226917058e-3
allele num: 2556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.163e-1

MQ
type: SiteQuality
SIO_000300: 5.144e1

FS
type: SiteQuality
SIO_000300: 2.98e0

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.224e1

DP
type: SiteQuality
SIO_000300: 5.76976e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.197318007662835e-4
allele num: 8352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 938
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.211e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.42e-2

FS
type: SiteQuality
SIO_000300: 6.688e0

DP
type: SiteQuality
SIO_000300: 5.8921e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.521e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

GenotypeQuality
all individuals: 1653
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.847991505928154e-5
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.42e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.211e0

DP
type: SiteQuality
SIO_000300: 5.8921e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.521e1

QD
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 6.688e0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 286

GenotypeQuality
all individuals: 1284
bin: 1.75e1
variant carriers: 235

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 243

GenotypeQuality
all individuals: 262
bin: 4.75e1
variant carriers: 164

GenotypeQuality
all individuals: 1032
bin: 2.75e1
variant carriers: 154

GenotypeQuality
all individuals: 401
bin: 9.25e1
variant carriers: 213

GenotypeQuality
all individuals: 852
bin: 1.25e1
variant carriers: 165

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 290

GenotypeQuality
all individuals: 1298
bin: 6.75e1
variant carriers: 255

GenotypeQuality
all individuals: 611
bin: 8.25e1
variant carriers: 295

GenotypeQuality
all individuals: 4627
bin: 6.25e1
variant carriers: 222

GenotypeQuality
all individuals: 269
bin: 5.25e1
variant carriers: 198

South Asian
type: Population
allele count: 529
allele frequency: 6.178462975940201e-2
allele num: 8562
num of homozygotes: 18

Other
type: Population
allele count: 31
allele frequency: 1.156716417910448e-1
allele num: 268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1577
allele frequency: 1.199239543726236e-1
allele num: 13150
num of homozygotes: 51

African
type: Population
allele count: 434
allele frequency: 1.50904033379694e-1
allele num: 2876
num of homozygotes: 33

European (Finnish)
type: Population
allele count: 165
allele frequency: 1.359143327841845e-1
allele num: 1214
num of homozygotes: 5

Latino
type: Population
allele count: 138
allele frequency: 1.597222222222222e-1
allele num: 864
num of homozygotes: 5

East Asian
type: Population
allele count: 385
allele frequency: 2.877428998505231e-1
allele num: 1338
num of homozygotes: 31

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

FS
type: SiteQuality
SIO_000300: 8.367000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -2.148e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.62e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

DP
type: SiteQuality
SIO_000300: 6.31974e5

QD
type: SiteQuality
SIO_000300: 8.19e0

MQ
type: SiteQuality
SIO_000300: 4.457e1

GenotypeQuality
all individuals: 576
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 3.652e1

DP
type: SiteQuality
SIO_000300: 6.28205e5

VQSLOD
type: SiteQuality
SIO_000300: -3.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 13779
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.745817593092283e-5
allele num: 14824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.308e1

VQSLOD
type: SiteQuality
SIO_000300: -1.672e0

DP
type: SiteQuality
SIO_000300: 6.48605e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.238e0

MQ
type: SiteQuality
SIO_000300: 5.49e1

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

South Asian
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allele count: 2
allele frequency: 2.243661655822302e-4
allele num: 8914
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15216
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 300
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1004
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.631e0

BaseQRankSum
type: SiteQuality
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VQSLOD
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QD
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MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.876642061804079e-4
allele num: 15986
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1084
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.3e0

MQ
type: SiteQuality
SIO_000300: 5.114e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1838
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.107665042091272e-4
allele num: 9028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.681e1

ReadPosRankSum
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SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.377e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

DP
type: SiteQuality
SIO_000300: 6.66779e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.03879875037791e-5
allele num: 19846
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9558
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VQSLOD
type: SiteQuality
SIO_000300: -2.04e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.424e1

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.442e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

DP
type: SiteQuality
SIO_000300: 7.23741e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.651986e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.684e0

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 4.702e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.652846e6

MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
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Latino
type: Population
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Other
type: Population
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
type: Population
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South Asian
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allele frequency: 6.097560975609756e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66516
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.93050193050193e-4
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.661974e6

FS
type: SiteQuality
SIO_000300: 4.551e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

MQ
type: SiteQuality
SIO_000300: 4.672e1

QD
type: SiteQuality
SIO_000300: 1.535e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

GenotypeQuality
all individuals: 1791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 72
allele frequency: 4.39185067707698e-3
allele num: 16394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.503036132988637e-4
allele num: 66532
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 3.939e1

MQRankSum
type: SiteQuality
SIO_000300: -1.628e0

VQSLOD
type: SiteQuality
SIO_000300: -2.752e0

DP
type: SiteQuality
SIO_000300: 2.667648e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2932
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GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

DP
type: SiteQuality
SIO_000300: 2.674819e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.66e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.916e0

QD
type: SiteQuality
SIO_000300: 3.135e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.034e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 1982
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variant carriers: 0

GenotypeQuality
all individuals: 228
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.587e0

VQSLOD
type: SiteQuality
SIO_000300: -2.024e0

MQ
type: SiteQuality
SIO_000300: 4.486e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

DP
type: SiteQuality
SIO_000300: 2.677622e6

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 2.841e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3290
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 36178
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variant carriers: 36

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 3192
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GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 37
allele frequency: 4.28141633881046e-3
allele num: 8642
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.049e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

FS
type: SiteQuality
SIO_000300: 2.966e0

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 4.783e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

DP
type: SiteQuality
SIO_000300: 2.679532e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1851
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 7073
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 207
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variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 1986
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GenotypeQuality
all individuals: 3297
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 2.680971e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.417e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.519e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 4.491e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 172
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GenotypeQuality
all individuals: 7078
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.763e0

DP
type: SiteQuality
SIO_000300: 2.684216e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.209e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

FS
type: SiteQuality
SIO_000300: 1.715e0

MQ
type: SiteQuality
SIO_000300: 5.217e1

MQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

DP
type: SiteQuality
SIO_000300: 2.685576e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 73

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 73
allele frequency: 8.44321073328707e-3
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.689436e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.738e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36271
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.387e1

QD
type: SiteQuality
SIO_000300: 8.09e0

DP
type: SiteQuality
SIO_000300: 2.691818e6

VQSLOD
type: SiteQuality
SIO_000300: -2.117e0

FS
type: SiteQuality
SIO_000300: 2.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.126e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

GenotypeQuality
all individuals: 3418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 4.832e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: -1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.914e0

DP
type: SiteQuality
SIO_000300: 2.693697e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 3249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

QD
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.762e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.865e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

DP
type: SiteQuality
SIO_000300: 2.69399e6

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.116e0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

MQ
type: SiteQuality
SIO_000300: 4.632e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.694787e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

VQSLOD
type: SiteQuality
SIO_000300: -1.458e0

QD
type: SiteQuality
SIO_000300: 1.333e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.458e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

FS
type: SiteQuality
SIO_000300: 9.116e0

QD
type: SiteQuality
SIO_000300: 1.333e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.694787e6

MQ
type: SiteQuality
SIO_000300: 4.632e1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7324
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 3105
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variant carriers: 0

GenotypeQuality
all individuals: 36298
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2038
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

FS
type: SiteQuality
SIO_000300: 2.668e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 9.59e0

MQ
type: SiteQuality
SIO_000300: 4.746e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

DP
type: SiteQuality
SIO_000300: 2.695471e6

GenotypeQuality
all individuals: 3245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2036
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36359
bin: 9.75e1
variant carriers: 155

GenotypeQuality
all individuals: 3260
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

African
type: Population
allele count: 146
allele frequency: 1.403576235339358e-2
allele num: 10402
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496807266840543e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.909656244601831e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.038e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 2.706302e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7315
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2036
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.417e1

DP
type: SiteQuality
SIO_000300: 2.706302e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 5.038e1

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3263
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.667e1

DP
type: SiteQuality
SIO_000300: 2.702746e6

FS
type: SiteQuality
SIO_000300: 4.735e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.005e1

VQSLOD
type: SiteQuality
SIO_000300: -4.042e0

MQ
type: SiteQuality
SIO_000300: 4.891e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36321
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.32e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.318e0

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 2.703207e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.061e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.813e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 1.168e0

DP
type: SiteQuality
SIO_000300: 2.703566e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 7.9e0

GenotypeQuality
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variant carriers: 370

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 390

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 395

GenotypeQuality
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variant carriers: 32560

European (Finnish)
type: Population
allele count: 1910
allele frequency: 3.227441703278134e-1
allele num: 5918
num of homozygotes: 0

South Asian
type: Population
allele count: 4694
allele frequency: 3.137700534759358e-1
allele num: 14960
num of homozygotes: 1

Latino
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allele count: 3654
allele frequency: 3.394648829431438e-1
allele num: 10764
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 22586
allele frequency: 3.623034969521976e-1
allele num: 62340
num of homozygotes: 0

Other
type: Population
allele count: 269
allele frequency: 3.312807881773399e-1
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 2818
allele frequency: 3.477295162882527e-1
allele num: 8104
num of homozygotes: 0

African
type: Population
allele count: 2139
allele frequency: 2.19790382244143e-1
allele num: 9732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

VQSLOD
type: SiteQuality
SIO_000300: 5.626e1

DP
type: SiteQuality
SIO_000300: 7.110128e6

FS
type: SiteQuality
SIO_000300: 5.762e0

MQRankSum
type: SiteQuality
SIO_000300: -6.794e0

QD
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.259e0

MQ
type: SiteQuality
SIO_000300: 4.672e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.557e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604106512672442e-5
allele num: 62340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14960
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.762e0

DP
type: SiteQuality
SIO_000300: 7.110128e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.259e0

VQSLOD
type: SiteQuality
SIO_000300: 5.626e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.557e-1

MQ
type: SiteQuality
SIO_000300: 4.672e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

MQRankSum
type: SiteQuality
SIO_000300: -6.794e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 186

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1084
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.122874558870709e-4
allele num: 62340
num of homozygotes: 0

African
type: Population
allele count: 186
allele frequency: 1.911220715166461e-2
allele num: 9732
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5918
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.114827201783724e-3
allele num: 10764
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.467917077986179e-4
allele num: 8104
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.231527093596059e-3
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.336898395721925e-4
allele num: 14960
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.110128e6

MQ
type: SiteQuality
SIO_000300: 4.672e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
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SIO_000300: -2.059e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.259e0

QD
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 5.762e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.557e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.794e0

VQSLOD
type: SiteQuality
SIO_000300: 5.626e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.207e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
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European (Finnish)
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allele count: 0
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allele num: 6614
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VQSLOD
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DP
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 3
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allele num: 10406
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Other
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European (Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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allele count: 3
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allele num: 66736
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Other
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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East Asian
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allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.847e1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 4.052236e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.062e0

QD
type: SiteQuality
SIO_000300: 1.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.722e0