7-30496584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30496584
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30496584
    reference: chr 7
allele count: 3
allele frequency: 2.518384204694268e-5
allele num: 119124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000409416
  ensembl transcript: ENST00000423334
  gene symbol: NOD1
  hgvsc: ENST00000423334.2:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000399505
  ensembl transcript: ENST00000413433
  gene symbol: NOD1
  hgvsc: ENST00000413433.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000410917
  ensembl transcript: ENST00000419601
  gene symbol: NOD1
  hgvsc: ENST00000419601.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000222823
  ensembl transcript: ENST00000222823
  gene symbol: NOD1
  hgvsc: ENST00000222823.4:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000416946
  ensembl transcript: ENST00000434755
  gene symbol: NOD1
  hgvsc: ENST00000434755.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000396046
  ensembl transcript: ENST00000411552
  gene symbol: NOD1
  hgvsc: ENST00000411552.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000395551
  ensembl transcript: ENST00000419799
  gene symbol: NOD1
  hgvsc: ENST00000419799.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/16390
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4036
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-30496585-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30496585
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30496585
    reference: chr 7
allele count: 7
allele frequency: 5.875243402940979e-5
allele num: 119144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000396046
  ensembl transcript: ENST00000411552
  gene symbol: NOD1
  hgvsc: ENST00000411552.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000395551
  ensembl transcript: ENST00000419799
  gene symbol: NOD1
  hgvsc: ENST00000419799.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000222823
  ensembl transcript: ENST00000222823
  gene symbol: NOD1
  hgvsc: ENST00000222823.4:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000410917
  ensembl transcript: ENST00000419601
  gene symbol: NOD1
  hgvsc: ENST00000419601.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000416946
  ensembl transcript: ENST00000434755
  gene symbol: NOD1
  hgvsc: ENST00000434755.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000409416
  ensembl transcript: ENST00000423334
  gene symbol: NOD1
  hgvsc: ENST00000423334.2:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000399505
  ensembl transcript: ENST00000413433
  gene symbol: NOD1
  hgvsc: ENST00000413433.1:c.-48C>T
  variant of: http://identifiers.org/hgnc/16390
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6029
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

7-30496587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30496587
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30496587
    reference: chr 7
allele count: 1
allele frequency: 8.395882659143956e-6
allele num: 119106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000409416
  ensembl transcript: ENST00000423334
  gene symbol: NOD1
  hgvsc: ENST00000423334.2:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000416946
  ensembl transcript: ENST00000434755
  gene symbol: NOD1
  hgvsc: ENST00000434755.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000399505
  ensembl transcript: ENST00000413433
  gene symbol: NOD1
  hgvsc: ENST00000413433.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000395551
  ensembl transcript: ENST00000419799
  gene symbol: NOD1
  hgvsc: ENST00000419799.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000222823
  ensembl transcript: ENST00000222823
  gene symbol: NOD1
  hgvsc: ENST00000222823.4:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000410917
  ensembl transcript: ENST00000419601
  gene symbol: NOD1
  hgvsc: ENST00000419601.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106100
  ensembl protein: ENSP00000396046
  ensembl transcript: ENST00000411552
  gene symbol: NOD1
  hgvsc: ENST00000411552.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/16390
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

7-30536669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536669
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536669
    reference: chr 7
allele count: 3
allele frequency: 2.547424553776132e-5
allele num: 117766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*125A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*261A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*304A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*460A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*125A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*39A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*39A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11539
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20434
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

7-30536677-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536677
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536677
    reference: chr 7
allele count: 1
allele frequency: 8.452656669991378e-6
allele num: 118306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*296A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*117A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*452A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*31A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*31A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*253A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*117A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12909
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

7-30536681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536681
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536681
    reference: chr 7
allele count: 12
allele frequency: 1.012299438173812e-4
allele num: 118542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*292T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*27T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*113T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*249T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*113T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*448T>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15418
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-30536696-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536696
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536694
    reference: chr 7
allele count: 1
allele frequency: 8.351428094204109e-6
allele num: 119740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*431_*432delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*10_*11delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*232_*233delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*96_*97delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.*10_*11delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*10_*11delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*96_*97delGA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*275_*276delGA
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: TTC
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

7-30536698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536698
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536698
    reference: chr 7
allele count: 1
allele frequency: 8.345712807330875e-6
allele num: 119822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*431G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*10G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*96G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*96G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*232G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*275G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-30536703-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536703
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536703
    reference: chr 7
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*5T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*270T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*91T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.*5T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*426T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*91T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*5T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*227T>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

7-30536705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536705
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536705
    reference: chr 7
allele count: 19
allele frequency: 1.578099303975149e-4
allele num: 120398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*89C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*89C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*268C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*424C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*225C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-30536707-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536707
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536707
    reference: chr 7
allele count: 19
allele frequency: 1.576763485477179e-4
allele num: 120500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*87A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*422A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*223A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*87A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.*1A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.*1A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*266A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.*1A>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12916
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-30536725-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536725
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536725
    reference: chr 7
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.550G>T
  hgvsp: ENSP00000275428.4:p.Glu184Ter
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.295G>T
  hgvsp: ENSP00000470615.1:p.Glu99Ter
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*248G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*69G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*69G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.268G>T
  hgvsp: ENSP00000386610.1:p.Glu90Ter
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*205G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*404G>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu184Ter
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

7-30536729-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536729
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536729
    reference: chr 7
allele count: 13
allele frequency: 1.073244831913348e-4
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*201G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.291G>C
  hgvsp: ENSP00000470615.1:p.Lys97Asn
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.264G>C
  hgvsp: ENSP00000386610.1:p.Lys88Asn
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.546G>C
  hgvsp: ENSP00000275428.4:p.Lys182Asn
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*65G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*400G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*65G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*244G>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys182Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-30536734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536734
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536734
    reference: chr 7
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*196A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*239A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.259A>G
  hgvsp: ENSP00000386610.1:p.Lys87Glu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.286A>G
  hgvsp: ENSP00000470615.1:p.Lys96Glu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*395A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.541A>G
  hgvsp: ENSP00000275428.4:p.Lys181Glu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*60A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*60A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12903
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7203
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys181Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

7-30536735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536735
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536735
    reference: chr 7
allele count: 3
allele frequency: 2.476023835856127e-5
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.540C>T
  hgvsp: ENST00000275428.4:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*59C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.285C>T
  hgvsp: ENST00000598361.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*394C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.258C>T
  hgvsp: ENST00000409144.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*195C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*59C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*238C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12902
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile180Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/7-30536736-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536736
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536736
    reference: chr 7
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*58T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*194T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*58T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.539T>G
  hgvsp: ENSP00000275428.4:p.Ile180Ser
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*237T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*393T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.284T>G
  hgvsp: ENSP00000470615.1:p.Ile95Ser
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.257T>G
  hgvsp: ENSP00000386610.1:p.Ile86Ser
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile180Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

7-30536739-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536739
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536739
    reference: chr 7
allele count: 5
allele frequency: 4.125140254768662e-5
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*55T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*234T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*55T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.536T>C
  hgvsp: ENSP00000275428.4:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*390T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.281T>C
  hgvsp: ENSP00000470615.1:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.254T>C
  hgvsp: ENSP00000386610.1:p.Ile85Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*191T>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile179Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

7-30536746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536746
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536746
    reference: chr 7
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.529G>A
  hgvsp: ENSP00000275428.4:p.Glu177Lys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.247G>A
  hgvsp: ENSP00000386610.1:p.Glu83Lys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*184G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*383G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*227G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.274G>A
  hgvsp: ENSP00000470615.1:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*48G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu177Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

7-30536748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536748
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536748
    reference: chr 7
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.527T>C
  hgvsp: ENSP00000275428.4:p.Ile176Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.272T>C
  hgvsp: ENSP00000470615.1:p.Ile91Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.245T>C
  hgvsp: ENSP00000386610.1:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*46T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*381T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*46T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*182T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*225T>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12903
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile176Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

7-30536749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536749
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536749
    reference: chr 7
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*181A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.244A>G
  hgvsp: ENSP00000386610.1:p.Ile82Val
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*45A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*45A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.271A>G
  hgvsp: ENSP00000470615.1:p.Ile91Val
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*224A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*380A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.526A>G
  hgvsp: ENSP00000275428.4:p.Ile176Val
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26122
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile176Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-30536760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536760
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536760
    reference: chr 7
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*34T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.260T>C
  hgvsp: ENSP00000470615.1:p.Val87Ala
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*369T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.233T>C
  hgvsp: ENSP00000386610.1:p.Val78Ala
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*34T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.515T>C
  hgvsp: ENSP00000275428.4:p.Val172Ala
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*213T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*170T>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val172Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

7-30536765-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536765
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536765
    reference: chr 7
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*165A>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*364A>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*29A>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.255A>T
  hgvsp: ENST00000598361.1:c.255A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*208A>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.228A>T
  hgvsp: ENST00000409144.1:c.228A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.510A>T
  hgvsp: ENST00000275428.4:c.510A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*29A>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12903
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly170Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

7-30536769-G-GTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536769
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536771
    reference: chr 7
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: GTA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*358_*359dupTA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.249_250dupTA
  hgvsp: ENSP00000470615.1:p.Thr84IlefsTer24
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*202_*203dupTA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.222_223dupTA
  hgvsp: ENSP00000386610.1:p.Thr75IlefsTer24
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.504_505dupTA
  hgvsp: ENSP00000275428.4:p.Thr169IlefsTer24
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*23_*24dupTA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*159_*160dupTA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*23_*24dupTA
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12901
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr169IlefsTer24
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-30536772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536772
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536772
    reference: chr 7
allele count: 71
allele frequency: 5.856056482077168e-4
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.503A>G
  hgvsp: ENSP00000275428.4:p.Tyr168Cys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*158A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*201A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*22A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.221A>G
  hgvsp: ENSP00000386610.1:p.Tyr74Cys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.248A>G
  hgvsp: ENSP00000470615.1:p.Tyr83Cys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*22A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*357A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 15385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr168Cys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

7-30536779-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536779
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536779
    reference: chr 7
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.496A>C
  hgvsp: ENSP00000275428.4:p.Asn166His
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*350A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*15A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.241A>C
  hgvsp: ENSP00000470615.1:p.Asn81His
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*194A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*151A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*15A>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.214A>C
  hgvsp: ENSP00000386610.1:p.Asn72His
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn166His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

7-30536781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536781
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536781
    reference: chr 7
allele count: 2
allele frequency: 1.649702228747711e-5
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.*13C>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*149C>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.212C>A
  hgvsp: ENSP00000386610.1:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.239C>A
  hgvsp: ENSP00000470615.1:p.Pro80Gln
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*348C>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.494C>A
  hgvsp: ENSP00000275428.4:p.Pro165Gln
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.*13C>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*192C>A
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro165Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-30536804-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536804
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536804
    reference: chr 7
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.335A>G
  hgvsp: ENSP00000005374.6:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*325A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*169A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.216A>G
  hgvsp: ENST00000598361.1:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.189A>G
  hgvsp: ENST00000409144.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.471A>G
  hgvsp: ENST00000275428.4:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.491A>G
  hgvsp: ENSP00000387235.1:p.Lys164Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*126A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys164Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

7-30536815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536815
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536815
    reference: chr 7
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.178C>T
  hgvsp: ENST00000409144.1:c.178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.460C>T
  hgvsp: ENST00000275428.4:c.460C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*158C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.324C>T
  hgvsp: ENST00000005374.6:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.205C>T
  hgvsp: ENST00000598361.1:c.205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.480C>T
  hgvsp: ENST00000409390.1:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*314C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu154Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

7-30536816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536816
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536816
    reference: chr 7
allele count: 121
allele frequency: 9.984651692439722e-4
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.323G>A
  hgvsp: ENSP00000005374.6:p.Arg108His
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*313G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.177G>A
  hgvsp: ENST00000409144.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.459G>A
  hgvsp: ENST00000275428.4:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.204G>A
  hgvsp: ENST00000598361.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*157G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.479G>A
  hgvsp: ENSP00000387235.1:p.Arg160His
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*114G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg160His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

7-30536817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536817
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536817
    reference: chr 7
allele count: 3
allele frequency: 2.475533477464394e-5
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*156C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.176C>T
  hgvsp: ENSP00000386610.1:p.Pro59Leu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.458C>T
  hgvsp: ENSP00000275428.4:p.Pro153Leu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.478C>T
  hgvsp: ENSP00000387235.1:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.322C>T
  hgvsp: ENSP00000005374.6:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.203C>T
  hgvsp: ENSP00000470615.1:p.Pro68Leu
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro153Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

7-30536817-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536817
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536817
    reference: chr 7
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.458C>G
  hgvsp: ENSP00000275428.4:p.Pro153Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.203C>G
  hgvsp: ENSP00000470615.1:p.Pro68Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*156C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.478C>G
  hgvsp: ENSP00000387235.1:p.Arg160Gly
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*312C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.322C>G
  hgvsp: ENSP00000005374.6:p.Arg108Gly
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*113C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.176C>G
  hgvsp: ENSP00000386610.1:p.Pro59Arg
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro153Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-30536825-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536825
    reference: chr 7
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.314T>C
  hgvsp: ENSP00000005374.6:p.Met105Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.168T>C
  hgvsp: ENST00000409144.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.470T>C
  hgvsp: ENSP00000387235.1:p.Met157Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*148T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.450T>C
  hgvsp: ENST00000275428.4:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*304T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*105T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.195T>C
  hgvsp: ENST00000598361.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12862
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met157Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

7-30536841-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536841
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536841
    reference: chr 7
allele count: 2
allele frequency: 1.655272871732905e-5
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.434T>C
  hgvsp: ENSP00000275428.4:p.Met145Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*89T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.298T>C
  hgvsp: ENSP00000005374.6:p.Trp100Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.179T>C
  hgvsp: ENSP00000470615.1:p.Met60Thr
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.454T>C
  hgvsp: ENSP00000387235.1:p.Trp152Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*288T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*132T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.152T>C
  hgvsp: ENSP00000386610.1:p.Met51Thr
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met145Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

7-30536853-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536853
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536853
    reference: chr 7
allele count: 12
allele frequency: 9.956027545009541e-5
allele num: 120530
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-2A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-2A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16165
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: c.424-2A>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

7-30536872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536872
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536872
    reference: chr 7
allele count: 2
allele frequency: 1.671206778414693e-5
allele num: 119674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-21G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-21G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12850
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15859
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

7-30536874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536874
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536874
    reference: chr 7
allele count: 57513
allele frequency: 4.824511366496099e-1
allele num: 119210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-23C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-23C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 4.25e1
  variant carriers: 4131
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 5.25e1
  variant carriers: 1867
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 1.25e1
  variant carriers: 1225
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 813
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 2.25e1
  variant carriers: 5311
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 12188
  bin: 2.75e1
  variant carriers: 6567
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 3110
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.25e1
  variant carriers: 6646
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.75e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 1146
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 420
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 4.75e1
  variant carriers: 2877
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.75e1
  variant carriers: 5535
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 9.75e1
  variant carriers: 1433
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 4.75e1
  variant carriers: 470
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 36581
  bin: 9.75e1
  variant carriers: 34876
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.75e1
  variant carriers: 544
num of homozygotes: 14982
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-30536876-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536876
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536877
    reference: chr 7
allele count: 1
allele frequency: 8.584427847883938e-6
allele num: 116490
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-26dupT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-26dupT
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5338
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-30536876-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536876
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536875
    reference: chr 7
allele count: 1
allele frequency: 8.584427847883938e-6
allele num: 116490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-26delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-26delT
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20303
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: CA
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-30536883-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536883
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536883
    reference: chr 7
allele count: 1
allele frequency: 8.595052687672975e-6
allele num: 116346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-32T>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-32T>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

7-30536885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30536885
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30536885
    reference: chr 7
allele count: 21
allele frequency: 1.810750685498474e-4
allele num: 115974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*278-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.444-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*79-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-34G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-34G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9927
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16075
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-30537312-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537312
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537312
    reference: chr 7
allele count: 233
allele frequency: 2.9125e-2
allele num: 8000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+45C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-461C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*123C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-461C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+45C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-461C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-461C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-461C>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+45C>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 28
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

7-30537321-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537321
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537320
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 8238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*113delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+35delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-471delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+35delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-471delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-471delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-471delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-471delT
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+35delT
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: TA
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-30537335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537335
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537335
    reference: chr 7
allele count: 2
allele frequency: 2.230151650312221e-4
allele num: 8968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-484G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-484G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+22G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-484G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+22G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*100G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-484G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+22G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-484G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

7-30537336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537336
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537336
    reference: chr 7
allele count: 3
allele frequency: 3.215434083601286e-4
allele num: 9330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-485C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-485C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-485C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+21C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-485C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+21C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+21C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-485C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

7-30537345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537345
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537345
    reference: chr 7
allele count: 2
allele frequency: 1.887504718761797e-4
allele num: 10596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-494C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-494C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-494C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-494C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-494C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*90C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+12C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+12C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+12C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-30537353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537353
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537353
    reference: chr 7
allele count: 1
allele frequency: 8.568980291345329e-5
allele num: 11670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-502A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*82A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-502A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-502A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-502A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+4A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+4A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+4A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-502A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
hgvs: c.*277+4A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

7-30537355-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537355
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537355
    reference: chr 7
allele count: 2
allele frequency: 1.669449081803005e-4
allele num: 11980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-504T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-504T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-504T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*80T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+2T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-504T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+2T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+2T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-504T>C
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
hgvs: c.*277+2T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-30537355-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537355
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537355
    reference: chr 7
allele count: 8
allele frequency: 6.67779632721202e-4
allele num: 11980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*80T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-504T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277+2T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-504T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-504T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78+2T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443+2T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-504T>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-504T>A
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
hgvs: c.*277+2T>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

7-30537357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537357
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537357
    reference: chr 7
allele count: 1
allele frequency: 8.135372600065082e-5
allele num: 12292
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-506G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-506G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-506G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*78G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*277G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.443G>A
  hgvsp: ENSP00000387235.1:p.Arg148Lys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-506G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*78G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-506G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg148Lys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

7-30537380-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537380
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537380
    reference: chr 7
allele count: 1
allele frequency: 6.510416666666667e-5
allele num: 15360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-529A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.420A>G
  hgvsp: ENST00000409390.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-529A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-529A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*55A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-529A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*55A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*254A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-529A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln140Gln
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

7-30537407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537407
    reference: chr 7
allele count: 1
allele frequency: 5.934013766911939e-5
allele num: 16852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*28A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-556A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.393A>G
  hgvsp: ENST00000409390.1:c.393A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-556A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*28A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-556A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-556A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-556A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu131Leu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-30537410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537410
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537410
    reference: chr 7
allele count: 1
allele frequency: 5.920663114268798e-5
allele num: 16890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-559C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-559C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-559C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-559C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*224C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-559C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.390C>T
  hgvsp: ENST00000409390.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn130Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

7-30537412-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537412
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537412
    reference: chr 7
allele count: 1
allele frequency: 5.904581955597544e-5
allele num: 16936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-561A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-561A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.388A>G
  hgvsp: ENSP00000387235.1:p.Asn130Asp
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*222A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-561A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*23A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*23A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-561A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-561A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn130Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

7-30537429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537429
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537429
    reference: chr 7
allele count: 1
allele frequency: 5.89066918001885e-5
allele num: 16976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*205C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.371C>T
  hgvsp: ENSP00000387235.1:p.Pro124Leu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-578C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-578C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-578C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-578C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-578C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro124Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

7-30537448-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537448
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537448
    reference: chr 7
allele count: 1
allele frequency: 5.959475566150179e-5
allele num: 16780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-597A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-597A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.352A>G
  hgvsp: ENSP00000387235.1:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-597A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.488A>G
  hgvsp: ENSP00000386686.1:p.Lys163Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.346A>G
  hgvsp: ENSP00000390094.1:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-597A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-597A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*186A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys163Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

7-30537474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537474
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537474
    reference: chr 7
allele count: 20
allele frequency: 1.225490196078431e-3
allele num: 16320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.462G>A
  hgvsp: ENST00000409436.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-623G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.320G>A
  hgvsp: ENST00000426081.1:c.320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-623G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-623G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-623G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.326G>A
  hgvsp: ENSP00000387235.1:p.Gly109Glu
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-623G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*160G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly109Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

7-30537499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537499
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537499
    reference: chr 7
allele count: 1
allele frequency: 6.777822963264199e-5
allele num: 14754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-648C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-648C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.295C>T
  hgvsp: ENSP00000390094.1:p.Thr99Met
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.437C>T
  hgvsp: ENSP00000386686.1:p.Thr146Met
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-648C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-648C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-648C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.301C>T
  hgvsp: ENSP00000387235.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr146Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

7-30537500-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537500
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537500
    reference: chr 7
allele count: 1
allele frequency: 6.800870511425463e-5
allele num: 14704
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-649A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-649A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.436A>G
  hgvsp: ENSP00000386686.1:p.Thr146Ala
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-649A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.294A>G
  hgvsp: ENSP00000390094.1:p.Thr99Ala
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-649A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*134A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.300A>G
  hgvsp: ENST00000409390.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-649A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr146Ala
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

7-30537508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537508
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537508
    reference: chr 7
allele count: 1
allele frequency: 7.248477819657872e-5
allele num: 13796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*126A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-657A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-657A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-657A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.292A>G
  hgvsp: ENSP00000387235.1:p.Arg98Gly
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.428A>G
  hgvsp: ENSP00000386686.1:p.Glu143Gly
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.286A>G
  hgvsp: ENSP00000390094.1:p.Glu96Gly
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-657A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-657A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu143Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-30537510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30537510
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30537510
    reference: chr 7
allele count: 1
allele frequency: 7.389890629618682e-5
allele num: 13532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*122-659G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.169-659G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-659G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-659G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.290G>A
  hgvsp: ENSP00000387235.1:p.Trp97Ter
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.424-659G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*124G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.284G>A
  hgvsp: ENST00000426081.1:c.284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.426G>A
  hgvsp: ENST00000409436.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21705
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp97Ter
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-30538373-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538373
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538376
    reference: chr 7
allele count: 1
allele frequency: 8.511072905850511e-6
allele num: 117494
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+45_*121+46insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+45_281+46insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+45_*121+46insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-862_288-861insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1523_142-1522insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+45_423+46insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+45_168+46insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1523_288-1522insAAA
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+45_423+46insAAA
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

7-30538376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538376
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538376
    reference: chr 7
allele count: 4
allele frequency: 3.400204012240735e-5
allele num: 117640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+43A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+43A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+43A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+43A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1525A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-864A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+43A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1525A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+43A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22276
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

7-30538386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538386
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538386
    reference: chr 7
allele count: 2
allele frequency: 1.696755802904846e-5
allele num: 117872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1535T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+33T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+33T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+33T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1535T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+33T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+33T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-874T>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+33T>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

7-30538389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538389
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538389
    reference: chr 7
allele count: 1
allele frequency: 8.481044864727334e-6
allele num: 117910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+30C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+30C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-877C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1538C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+30C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+30C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+30C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1538C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+30C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

7-30538390-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538390
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538390
    reference: chr 7
allele count: 1
allele frequency: 8.477306251165629e-6
allele num: 117962
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+29A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1539A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+29A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-878A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+29A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+29A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+29A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1539A>G
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+29A>G
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-30538394-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538394
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538394
    reference: chr 7
allele count: 2
allele frequency: 1.691246110133947e-5
allele num: 118256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-882G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1543G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+25G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+25G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1543G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+25G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+25G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+25G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+25G>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

7-30538399-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538399
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538399
    reference: chr 7
allele count: 5476
allele frequency: 4.600675482667652e-2
allele num: 119026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-887G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+20G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+20G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+20G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+20G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1548G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+20G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1548G>C
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+20G>C
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 4.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 5.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.75e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 10286
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 5.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.25e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 9.75e1
  variant carriers: 2652
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.25e1
  variant carriers: 377
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 160
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

7-30538406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538406
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538406
    reference: chr 7
allele count: 10
allele frequency: 8.342231713828083e-5
allele num: 119872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+13C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+13C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-894C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+13C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+13C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1555C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+13C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1555C>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+13C>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-30538414-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538414
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538414
    reference: chr 7
allele count: 2
allele frequency: 1.658677370664632e-5
allele num: 120578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+5G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+5G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+5G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+5G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1563G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1563G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-902G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+5G>T
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+5G>T
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: c.423+5G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

7-30538418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538418
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538418
    reference: chr 7
allele count: 1
allele frequency: 8.279242283746192e-6
allele num: 120784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000470615
  ensembl transcript: ENST00000598361
  gene symbol: GGCT
  hgvsc: ENST00000598361.1:c.168+1G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386686
  ensembl transcript: ENST00000409436
  gene symbol: GGCT
  hgvsc: ENST00000409436.1:c.423+1G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000005374
  ensembl transcript: ENST00000005374
  gene symbol: GGCT
  hgvsc: ENST00000005374.6:c.288-1567G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387235
  ensembl transcript: ENST00000409390
  gene symbol: GGCT
  hgvsc: ENST00000409390.1:c.288-906G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000390094
  ensembl transcript: ENST00000426081
  gene symbol: GGCT
  hgvsc: ENST00000426081.1:c.281+1G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000387809
  ensembl transcript: ENST00000447901
  gene symbol: GGCT
  hgvsc: ENST00000447901.1:c.*121+1G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000275428
  ensembl transcript: ENST00000275428
  gene symbol: GGCT
  hgvsc: ENST00000275428.4:c.423+1G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000408015
  ensembl transcript: ENST00000440082
  gene symbol: GGCT
  hgvsc: ENST00000440082.1:c.*121+1G>A
  variant of: http://identifiers.org/hgnc/21705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006625
  ensembl protein: ENSP00000386610
  ensembl transcript: ENST00000409144
  gene symbol: GGCT
  hgvsc: ENST00000409144.1:c.142-1567G>A
  variant of: http://identifiers.org/hgnc/21705
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
hgvs: c.423+1G>A
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

7-30538429-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30538429
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 30538429
    reference: chr 7
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
canonical: true
consequence: missense
filter: PASS
hgvs: p.Gln138Arg
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 3164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4754
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.143260842855388e-5
allele num: 16278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526857422053929e-5
allele num: 65494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.254e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

DP
type: SiteQuality
SIO_000300: 1.650228e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.58e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 2552
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4714
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6483
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.107056704021496e-5
allele num: 65498
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.841620626151013e-4
allele num: 16290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.648902e6

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

QD
type: SiteQuality
SIO_000300: 1.42e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.852e0

FS
type: SiteQuality
SIO_000300: 2.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
all individuals: 5052
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5995
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527557130636686e-5
allele num: 65464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.345e0

DP
type: SiteQuality
SIO_000300: 1.644615e6

VQSLOD
type: SiteQuality
SIO_000300: -8.545e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

GenotypeQuality
all individuals: 2662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52849107361213e-5
allele num: 65424
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.755e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.417e0

DP
type: SiteQuality
SIO_000300: 2.069695e6

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

QD
type: SiteQuality
SIO_000300: 2.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65646
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 5.536e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.173e1

DP
type: SiteQuality
SIO_000300: 2.09179e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.677e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

GenotypeQuality
all individuals: 2722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12914
bin: 9.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15002
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.175318315377081e-3
allele num: 10210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.73e-2

MQ
type: SiteQuality
SIO_000300: 5.697e1

DP
type: SiteQuality
SIO_000300: 2.099989e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 1.373e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 7078
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4162
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.635e1

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.361e0

DP
type: SiteQuality
SIO_000300: 2.122571e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24726
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 3297
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 261
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GenotypeQuality
all individuals: 7071
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variant carriers: 0

GenotypeQuality
all individuals: 2435
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 12908
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1500
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.447e1

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.125099e6

FS
type: SiteQuality
SIO_000300: 1.872e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.645e0

VQSLOD
type: SiteQuality
SIO_000300: -9.796e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

GenotypeQuality
all individuals: 12910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 4168
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508523155830442e-5
allele num: 66290
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.130846e6

QD
type: SiteQuality
SIO_000300: 1.422e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.425e0

MQ
type: SiteQuality
SIO_000300: 5.401e1

FS
type: SiteQuality
SIO_000300: 5.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12915
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 4175
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variant carriers: 0

GenotypeQuality
all individuals: 7120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25280
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 19
allele frequency: 1.84072854098043e-3
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.673e1

VQSLOD
type: SiteQuality
SIO_000300: -8.764999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

FS
type: SiteQuality
SIO_000300: 1.973e0

DP
type: SiteQuality
SIO_000300: 2.133523e6

MQ
type: SiteQuality
SIO_000300: 5.582e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.634e0

MQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 2769
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GenotypeQuality
all individuals: 1505
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3319
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2441
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.83894696089818e-3
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.581e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.13511e6

VQSLOD
type: SiteQuality
SIO_000300: -8.076e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 4186
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
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GenotypeQuality
all individuals: 3306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 173
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 1499
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GenotypeQuality
all individuals: 12903
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7183
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.024e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.407e0

QD
type: SiteQuality
SIO_000300: 6.55e0

DP
type: SiteQuality
SIO_000300: 2.14242e6

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.561e1

VQSLOD
type: SiteQuality
SIO_000300: -2.249e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12912
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 3307
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.953066314113158e-4
allele num: 66562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.789e0

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

MQ
type: SiteQuality
SIO_000300: 5.532e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.57e0

QD
type: SiteQuality
SIO_000300: 1.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 2.14354e6

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0485e1

MQ
type: SiteQuality
SIO_000300: 5.104e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.221e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.143462e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.599e0

VQSLOD
type: SiteQuality
SIO_000300: -2.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 9.83e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 4186
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.927153594141453e-4
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.61e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.56e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.681e0

QD
type: SiteQuality
SIO_000300: 1.137e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 2.143624e6

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 26089
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 12902
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variant carriers: 1

GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 4188
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variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7200
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.143535e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

QD
type: SiteQuality
SIO_000300: 1.324e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.267e0

MQ
type: SiteQuality
SIO_000300: 4.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 4187
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variant carriers: 0

GenotypeQuality
all individuals: 3309
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 2439
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variant carriers: 0

GenotypeQuality
all individuals: 26096
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variant carriers: 0

GenotypeQuality
all individuals: 7204
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 12906
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.030670384289005e-4
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.184e0

VQSLOD
type: SiteQuality
SIO_000300: -1.584e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.118e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

DP
type: SiteQuality
SIO_000300: 2.14399e6

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2772
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e0

FS
type: SiteQuality
SIO_000300: 1.646e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 5.894e1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: -6.372e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.419e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.14452e6

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 105
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 2.144346e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -1.646e0

QD
type: SiteQuality
SIO_000300: 2.001e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 9.03e-1

MQ
type: SiteQuality
SIO_000300: 5.106e1

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3310
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GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e0

MQ
type: SiteQuality
SIO_000300: 5.821e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.741e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.566e1

DP
type: SiteQuality
SIO_000300: 2.144499e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -3.485e0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 1496
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 12902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.329e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.372e0

QD
type: SiteQuality
SIO_000300: 1.963e1

MQ
type: SiteQuality
SIO_000300: 5.127e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.34e0

DP
type: SiteQuality
SIO_000300: 2.14446e6

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 2.144394e6

QD
type: SiteQuality
SIO_000300: 8.68e0

MQRankSum
type: SiteQuality
SIO_000300: -1.349e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.808e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3306
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQ
type: SiteQuality
SIO_000300: 5.172e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 2.144565e6

GenotypeQuality
all individuals: 12955
bin: 9.75e1
variant carriers: 71

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 1492
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variant carriers: 0

South Asian
type: Population
allele count: 66
allele frequency: 4.000484907261486e-3
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.295e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

DP
type: SiteQuality
SIO_000300: 2.146505e6

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12892
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variant carriers: 1

GenotypeQuality
all individuals: 4172
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.47e1

FS
type: SiteQuality
SIO_000300: 5.881e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQ
type: SiteQuality
SIO_000300: 5.193e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.144479e6

VQSLOD
type: SiteQuality
SIO_000300: -1.266e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
all individuals: 12890
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3294
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

DP
type: SiteQuality
SIO_000300: 2.144727e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.308e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.235e1

FS
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1495
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 6.82e0

MQ
type: SiteQuality
SIO_000300: 4.805e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 2.144589e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.525e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.074e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 5.441e1

DP
type: SiteQuality
SIO_000300: 2.143766e6

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 120

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3277
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GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.323763403666552e-4
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 89
allele frequency: 8.584104938271605e-3
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033612425676495e-4
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.852681520629392e-4
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.452e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.763e0

DP
type: SiteQuality
SIO_000300: 2.146906e6

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504504504504505e-5
allele num: 66600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.6e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.143172e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.321e0

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 26023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3289
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.321e0

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

QD
type: SiteQuality
SIO_000300: 1.099e1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 9.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.6e1

DP
type: SiteQuality
SIO_000300: 2.143172e6

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 3283
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.748e1

FS
type: SiteQuality
SIO_000300: 1.022e0

VQSLOD
type: SiteQuality
SIO_000300: -9.681999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 2.141297e6

QD
type: SiteQuality
SIO_000300: 1.234e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

DP
type: SiteQuality
SIO_000300: 2.130083e6

VQSLOD
type: SiteQuality
SIO_000300: -1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.342e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

GenotypeQuality
all individuals: 436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
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GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2667
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12870
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.775902427005051e-4
allele num: 16234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.472e0

MQ
type: SiteQuality
SIO_000300: 5.704e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 2.111672e6

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
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variant carriers: 0

GenotypeQuality
all individuals: 2198
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variant carriers: 0

GenotypeQuality
all individuals: 1806
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variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 2013
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variant carriers: 0

GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 2542
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GenotypeQuality
all individuals: 2190
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variant carriers: 0

GenotypeQuality
all individuals: 3965
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variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.291682395872656e-5
allele num: 15894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.850275807722617e-5
allele num: 10152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 8.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 2.070682e6

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.855e0

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 1662
bin: 7.75e1
variant carriers: 927

GenotypeQuality
all individuals: 658
bin: 3.75e1
variant carriers: 324

GenotypeQuality
all individuals: 1613
bin: 2.25e1
variant carriers: 113

GenotypeQuality
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bin: 2.75e1
variant carriers: 112

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 486

GenotypeQuality
all individuals: 1217
bin: 9.25e1
variant carriers: 931

GenotypeQuality
all individuals: 776
bin: 5.25e1
variant carriers: 586

GenotypeQuality
all individuals: 382
bin: 4.25e1
variant carriers: 244

GenotypeQuality
all individuals: 2671
bin: 6.75e1
variant carriers: 835

GenotypeQuality
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bin: 5.75e1
variant carriers: 410

GenotypeQuality
all individuals: 796
bin: 3.25e1
variant carriers: 202

GenotypeQuality
all individuals: 8987
bin: 6.25e1
variant carriers: 770

GenotypeQuality
all individuals: 1380
bin: 8.25e1
variant carriers: 912

Latino
type: Population
allele count: 7199
allele frequency: 6.269813621320327e-1
allele num: 11482
num of homozygotes: 2283

European (Finnish)
type: Population
allele count: 2484
allele frequency: 3.773928896991796e-1
allele num: 6582
num of homozygotes: 467

European (Non-Finnish)
type: Population
allele count: 27203
allele frequency: 4.145029560553422e-1
allele num: 65628
num of homozygotes: 5571

South Asian
type: Population
allele count: 7718
allele frequency: 4.846772167797036e-1
allele num: 15924
num of homozygotes: 1882

Other
type: Population
allele count: 374
allele frequency: 4.183445190156599e-1
allele num: 894
num of homozygotes: 77

East Asian
type: Population
allele count: 3651
allele frequency: 4.268178629880758e-1
allele num: 8554
num of homozygotes: 800

African
type: Population
allele count: 8884
allele frequency: 8.756160063079046e-1
allele num: 10146
num of homozygotes: 3902

MQ
type: SiteQuality
SIO_000300: 5.728e1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.169999999999999e-2

QD
type: SiteQuality
SIO_000300: 2.067e1

FS
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 2.198221e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
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variant carriers: 0

GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
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variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548562933597621e-5
allele num: 64576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.81e0

FS
type: SiteQuality
SIO_000300: 4.191e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.849e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.726643e6

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 547
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GenotypeQuality
all individuals: 850
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1644
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GenotypeQuality
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GenotypeQuality
all individuals: 171
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variant carriers: 1

GenotypeQuality
all individuals: 1381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5338
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GenotypeQuality
all individuals: 27025
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.769564040075819e-5
allele num: 14772
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.191e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 1.726643e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e0

MQ
type: SiteQuality
SIO_000300: 5.849e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
type: SiteQuality
SIO_000300: 8.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 2108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 5303
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5485149741398e-5
allele num: 64578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQ
type: SiteQuality
SIO_000300: 5.647e1

DP
type: SiteQuality
SIO_000300: 1.659888e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 2.5158e1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14506
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 2.052966536645453e-3
allele num: 9742
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.784258608573436e-5
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.685e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.071e0

DP
type: SiteQuality
SIO_000300: 1.636902e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 185

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1258
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 106
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 2.97029702970297e-2
allele num: 202
num of homozygotes: 0

African
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allele count: 223
allele frequency: 2.511261261261261e-1
allele num: 888
num of homozygotes: 28

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.151410477835348e-3
allele num: 3474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.667e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

DP
type: SiteQuality
SIO_000300: 1.6731e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.17e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.72623e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 922
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3800
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.104972375690608e-3
allele num: 1810
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.158e-1

DP
type: SiteQuality
SIO_000300: 1.83545e5

QD
type: SiteQuality
SIO_000300: 7.72e0

GenotypeQuality
all individuals: 199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 9.624639076034649e-4
allele num: 2078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 6.024096385542169e-4
allele num: 1660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.152e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

DP
type: SiteQuality
SIO_000300: 1.86182e5

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 470
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.690431519699812e-4
allele num: 4264
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

VQSLOD
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 480
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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South Asian
type: Population
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allele num: 3606
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Latino
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European (Non-Finnish)
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allele num: 4526
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQ
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.168256721595837e-4
allele num: 4612
num of homozygotes: 0

South Asian
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allele frequency: 2.619172341540073e-4
allele num: 3818
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
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SIO_000300: 1.29e-2

DP
type: SiteQuality
SIO_000300: 2.07968e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 7.85751702462022e-4
allele num: 3818
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.084128360797918e-3
allele num: 4612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.07968e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

QD
type: SiteQuality
SIO_000300: 1.226e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1672
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.13857998289136e-4
allele num: 4676
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.544e1

DP
type: SiteQuality
SIO_000300: 2.11033e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.833516685001834e-4
allele num: 5454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.747e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

DP
type: SiteQuality
SIO_000300: 2.38825e5

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.363884342607747e-4
allele num: 7332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

DP
type: SiteQuality
SIO_000300: 2.56897e5

QD
type: SiteQuality
SIO_000300: 1.246e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 2.049180327868853e-3
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VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 4.854368932038835e-3
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 2.57788e5

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -6.0e-3

ClippingRankSum
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.727712508638562e-4
allele num: 5788
num of homozygotes: 0

Latino
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East Asian
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1654
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FS
type: SiteQuality
SIO_000300: 5.119e0

MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

African
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South Asian
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allele num: 7522
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East Asian
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.291989664082687e-3
allele num: 5418
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
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allele count: 13
allele frequency: 7.975460122699387e-3
allele num: 1630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.327e1

DP
type: SiteQuality
SIO_000300: 2.52186e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

BaseQRankSum
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SIO_000300: -3.578e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.051702913418137e-4
allele num: 4874
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 286
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.098e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.513e0

VQSLOD
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ReadPosRankSum
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SIO_000300: 1.71e0

MQ
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.221e0

MQRankSum
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SIO_000300: -5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.055921052631579e-4
allele num: 4864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQ
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SIO_000300: 5.876e1

DP
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.26e-1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

FS
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.1654395842356e-4
allele num: 4618
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.17e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

BaseQRankSum
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SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 2.10684e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4544
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 6.165228113440197e-4
allele num: 1622
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MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.07023e5

FS
type: SiteQuality
SIO_000300: 1.795e0

InbreedingCoeff
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SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 1.51e1

VQSLOD
type: SiteQuality
SIO_000300: -2.808e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
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SIO_000300: -1.412e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.519849230956289e-5
allele num: 65796
num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
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MQ
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VQSLOD
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FS
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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allele count: 3
allele frequency: 2.901353965183752e-4
allele num: 10340
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ReadPosRankSum
type: SiteQuality
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DP
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 3.034809262237868e-5
allele num: 65902
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Latino
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num of homozygotes: 0

InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1899
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.510543e6

FS
type: SiteQuality
SIO_000300: 1.2569e1

QD
type: SiteQuality
SIO_000300: 1.721e1

VQSLOD
type: SiteQuality
SIO_000300: -1.798e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.622e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.716e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22269
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.986e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.755e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.511754e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22270
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1899
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030854094683882e-5
allele num: 65988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.518097e6

FS
type: SiteQuality
SIO_000300: 1.849e1

VQSLOD
type: SiteQuality
SIO_000300: -5.753e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.079e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

QD
type: SiteQuality
SIO_000300: 1.354e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

GenotypeQuality
all individuals: 5526
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1084
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 22863
bin: 9.75e1
variant carriers: 5296

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2337
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 15044
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3533
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3923
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 2

Latino
type: Population
allele count: 307
allele frequency: 2.656168887350753e-2
allele num: 11558
num of homozygotes: 5

East Asian
type: Population
allele count: 249
allele frequency: 2.882611715674925e-2
allele num: 8638
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 4106
allele frequency: 6.206542112582381e-2
allele num: 66156
num of homozygotes: 130

South Asian
type: Population
allele count: 363
allele frequency: 2.454029204975662e-2
allele num: 14792
num of homozygotes: 9

Other
type: Population
allele count: 26
allele frequency: 2.914798206278027e-2
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 316
allele frequency: 4.777744179014212e-2
allele num: 6614
num of homozygotes: 8

African
type: Population
allele count: 109
allele frequency: 1.050501156515035e-2
allele num: 10376
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 3.88e0

DP
type: SiteQuality
SIO_000300: 2.737797e6

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

GenotypeQuality
all individuals: 2092
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19480
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2596
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.50779530170984e-4
allele num: 66322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15436
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.124e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

FS
type: SiteQuality
SIO_000300: 1.234e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

DP
type: SiteQuality
SIO_000300: 2.440247e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19478
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3993
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010325416177489e-5
allele num: 66438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

FS
type: SiteQuality
SIO_000300: 1.442e0

QD
type: SiteQuality
SIO_000300: 1.12e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 2.449396e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.163e0

GenotypeQuality
all individuals: 317
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.295e0

DP
type: SiteQuality
SIO_000300: 2.452588e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 5.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1