5-140181572-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181572
    reference: chr 5
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.790G>T
  hgvsp: ENSP00000434086.2:p.Val264Phe
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14095G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4635G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3073G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.790G>T
  hgvsp: ENSP00000429808.2:p.Val264Phe
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13303G>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34232
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val264Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

5-140181622-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181622
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181622
    reference: chr 5
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.840T>C
  hgvsp: ENST00000522353.2:c.840T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13353T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14145T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3023T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.840T>C
  hgvsp: ENST00000532566.2:c.840T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4685T>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34254
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser280Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

5-140181628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181628
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181628
    reference: chr 5
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.846T>C
  hgvsp: ENST00000532566.2:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14151T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3017T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4691T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.846T>C
  hgvsp: ENST00000522353.2:c.846T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13359T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn282Asn
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-140181630-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181630
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181630
    reference: chr 5
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13361C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3015C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.848C>A
  hgvsp: ENSP00000429808.2:p.Thr283Lys
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4693C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.848C>A
  hgvsp: ENSP00000434086.2:p.Thr283Lys
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14153C>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr283Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140181630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181630
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181630
    reference: chr 5
allele count: 6
allele frequency: 4.943968358602505e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13361C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.848C>T
  hgvsp: ENSP00000429808.2:p.Thr283Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.848C>T
  hgvsp: ENSP00000434086.2:p.Thr283Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4693C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14153C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3015C>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34256
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11773
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr283Met
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

5-140181631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181631
    reference: chr 5
allele count: 22
allele frequency: 1.812878026270251e-4
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14154G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.849G>A
  hgvsp: ENST00000522353.2:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.849G>A
  hgvsp: ENST00000532566.2:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4694G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3014G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13362G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34268
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr283Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

5-140181636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181636
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181636
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14159T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.854T>C
  hgvsp: ENSP00000434086.2:p.Met285Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3009T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.854T>C
  hgvsp: ENSP00000429808.2:p.Met285Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13367T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4699T>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34265
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met285Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

5-140181637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181637
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181637
    reference: chr 5
allele count: 3
allele frequency: 2.471861971227527e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14160G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.855G>A
  hgvsp: ENSP00000429808.2:p.Met285Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4700G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.855G>A
  hgvsp: ENSP00000434086.2:p.Met285Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3008G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13368G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34266
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met285Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/5-140181639-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181639
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181639
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.857C>A
  hgvsp: ENSP00000434086.2:p.Ser286Ter
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.857C>A
  hgvsp: ENSP00000429808.2:p.Ser286Ter
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3006C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13370C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4702C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14162C>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser286Ter
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

5-140181639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181639
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181639
    reference: chr 5
allele count: 26
allele frequency: 2.142280375063856e-4
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14162C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-3006C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13370C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.857C>T
  hgvsp: ENSP00000429808.2:p.Ser286Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.857C>T
  hgvsp: ENSP00000434086.2:p.Ser286Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4702C>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser286Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

5-140181648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181648
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181648
    reference: chr 5
allele count: 12756
allele frequency: 1.051070351510357e-1
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.866T>C
  hgvsp: ENSP00000429808.2:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13379T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2997T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4711T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.866T>C
  hgvsp: ENSP00000434086.2:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14171T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 8.75e1
  variant carriers: 487
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 2.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 7.75e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 5.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 5.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 6.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 2.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 8.25e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.25e1
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 7.25e1
  variant carriers: 329
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 9.75e1
  variant carriers: 8776
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 3.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 8.25e1
  variant carriers: 3
hgvs: p.Ile289Thr
num of homozygotes: 811
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

5-140181663-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181663
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181663
    reference: chr 5
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13394A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4726A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2982A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.881A>G
  hgvsp: ENSP00000434086.2:p.His294Arg
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.881A>G
  hgvsp: ENSP00000429808.2:p.His294Arg
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14186A>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33764
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His294Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

5-140181664-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181664
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181664
    reference: chr 5
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.882T>C
  hgvsp: ENST00000532566.2:c.882T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13395T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.882T>C
  hgvsp: ENST00000522353.2:c.882T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14187T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2981T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4727T>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His294His
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

5-140181688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181688
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181688
    reference: chr 5
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2957C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14211C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4751C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13419C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.906C>T
  hgvsp: ENST00000532566.2:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.906C>T
  hgvsp: ENST00000522353.2:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile302Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-140181699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181699
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181699
    reference: chr 5
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4762G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14222G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.917G>A
  hgvsp: ENSP00000434086.2:p.Gly306Asp
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13430G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2946G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.917G>A
  hgvsp: ENSP00000429808.2:p.Gly306Asp
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly306Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

5-140181699-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181699
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181699
    reference: chr 5
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.917G>T
  hgvsp: ENSP00000429808.2:p.Gly306Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4762G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2946G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.917G>T
  hgvsp: ENSP00000434086.2:p.Gly306Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13430G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14222G>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33772
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly306Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

5-140181706-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181706
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181706
    reference: chr 5
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.924A>G
  hgvsp: ENSP00000429808.2:p.Ile308Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2939A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14229A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4769A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.924A>G
  hgvsp: ENSP00000434086.2:p.Ile308Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13437A>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13815
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile308Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-140181706-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181706
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181706
    reference: chr 5
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.924A>T
  hgvsp: ENST00000522353.2:c.924A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14229A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4769A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2939A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.924A>T
  hgvsp: ENST00000532566.2:c.924A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13437A>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile308Ile
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-140181713-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181713
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181713
    reference: chr 5
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.931G>C
  hgvsp: ENSP00000434086.2:p.Glu311Gln
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4776G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2932G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14236G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13444G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.931G>C
  hgvsp: ENSP00000429808.2:p.Glu311Gln
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33781
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu311Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-140181721-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181721
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181721
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14244T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13452T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2924T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4784T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.939T>C
  hgvsp: ENST00000522353.2:c.939T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.939T>C
  hgvsp: ENST00000532566.2:c.939T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13846
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser313Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140181726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181726
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181726
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2919C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.944C>T
  hgvsp: ENSP00000429808.2:p.Ser315Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.944C>T
  hgvsp: ENSP00000434086.2:p.Ser315Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13457C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4789C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14249C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser315Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-140181727-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181727
    reference: chr 5
allele count: 15
allele frequency: 1.235584843492587e-4
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.945A>G
  hgvsp: ENST00000522353.2:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13458A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2918A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14250A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4790A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.945A>G
  hgvsp: ENST00000532566.2:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser315Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

5-140181729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181729
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181729
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2916A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14252A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4792A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.947A>G
  hgvsp: ENSP00000434086.2:p.Tyr316Cys
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.947A>G
  hgvsp: ENSP00000429808.2:p.Tyr316Cys
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13460A>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr316Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-140181733-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181733
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181733
    reference: chr 5
allele count: 12
allele frequency: 9.884515905833511e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4796A>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13464A>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14256A>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2912A>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.951A>C
  hgvsp: ENSP00000434086.2:p.Glu317Asp
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.951A>C
  hgvsp: ENSP00000429808.2:p.Glu317Asp
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu317Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

5-140181734-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181734
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181734
    reference: chr 5
allele count: 63697
allele frequency: 5.248858710878916e-1
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14257A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.952A>G
  hgvsp: ENSP00000429808.2:p.Ile318Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13465A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2911A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4797A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.952A>G
  hgvsp: ENSP00000434086.2:p.Ile318Val
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 967
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 9.25e1
  variant carriers: 2209
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 1234
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35369
  bin: 9.75e1
  variant carriers: 35088
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.75e1
  variant carriers: 1408
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 3.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 2.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 8.75e1
  variant carriers: 1827
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 709
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 8.25e1
  variant carriers: 1631
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 221
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Ile318Val
num of homozygotes: 16868
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-140181735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181735
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181735
    reference: chr 5
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14258T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4798T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.953T>C
  hgvsp: ENSP00000434086.2:p.Ile318Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2910T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.953T>C
  hgvsp: ENSP00000429808.2:p.Ile318Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13466T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25028
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile318Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-140181737-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181737
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181737
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.955C>G
  hgvsp: ENSP00000434086.2:p.Gln319Glu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14260C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13468C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.955C>G
  hgvsp: ENSP00000429808.2:p.Gln319Glu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4800C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2908C>G
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48060
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln319Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-140181740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181740
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181740
    reference: chr 5
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13471G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.958G>A
  hgvsp: ENSP00000429808.2:p.Val320Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4803G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.958G>A
  hgvsp: ENSP00000434086.2:p.Val320Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2905G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14263G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25026
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48060
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val320Ile
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-140181750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181750
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181750
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.968C>T
  hgvsp: ENSP00000434086.2:p.Thr323Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.968C>T
  hgvsp: ENSP00000429808.2:p.Thr323Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4813C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14273C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13481C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2895C>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25026
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
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genotype quality: GenotypeQuality
  all individuals: 8783
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr323Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-140181764-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181764
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181764
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.982C>A
  hgvsp: ENSP00000434086.2:p.Pro328Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2881C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13495C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4827C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14287C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.982C>A
  hgvsp: ENSP00000429808.2:p.Pro328Thr
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro328Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

5-140181764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181764
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181764
    reference: chr 5
allele count: 26
allele frequency: 2.141503994728606e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13495C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14287C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2881C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.982C>T
  hgvsp: ENSP00000429808.2:p.Pro328Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.982C>T
  hgvsp: ENSP00000434086.2:p.Pro328Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4827C>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25033
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48062
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro328Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

5-140181770-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181770
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181770
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4833A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13501A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.988A>G
  hgvsp: ENSP00000429808.2:p.Met330Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14293A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.988A>G
  hgvsp: ENSP00000434086.2:p.Met330Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2875A>G
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25023
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48053
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met330Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

5-140181771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181771
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181771
    reference: chr 5
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13502T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.989T>C
  hgvsp: ENSP00000429808.2:p.Met330Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.989T>C
  hgvsp: ENSP00000434086.2:p.Met330Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4834T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14294T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2874T>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25023
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48053
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met330Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-140181772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181772
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181772
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.990G>A
  hgvsp: ENSP00000429808.2:p.Met330Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.990G>A
  hgvsp: ENSP00000434086.2:p.Met330Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2873G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14295G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4835G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13503G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48053
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met330Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-140181774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181774
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181774
    reference: chr 5
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2871C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4837C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.992C>T
  hgvsp: ENSP00000434086.2:p.Ser331Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13505C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14297C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.992C>T
  hgvsp: ENSP00000429808.2:p.Ser331Leu
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25026
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser331Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-140181778-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181778
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181778
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.996T>C
  hgvsp: ENST00000522353.2:c.996T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2867T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13509T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4841T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.996T>C
  hgvsp: ENST00000532566.2:c.996T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14301T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp332Asp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

5-140181782-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181782
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181782
    reference: chr 5
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4845T>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2863T>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1000T>A
  hgvsp: ENSP00000434086.2:p.Cys334Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14305T>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1000T>A
  hgvsp: ENSP00000429808.2:p.Cys334Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13513T>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25018
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys334Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-140181794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181794
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181794
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1012C>T
  hgvsp: ENSP00000434086.2:p.Leu338Phe
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14317C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4857C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1012C>T
  hgvsp: ENSP00000429808.2:p.Leu338Phe
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2851C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13525C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25014
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48050
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu338Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

5-140181805-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181805
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181805
    reference: chr 5
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13536G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1023G>T
  hgvsp: ENST00000522353.2:c.1023G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1023G>T
  hgvsp: ENST00000532566.2:c.1023G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4868G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2840G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14328G>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25013
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val341Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-140181806-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181806
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181806
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4869G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1024G>C
  hgvsp: ENSP00000429808.2:p.Asp342His
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14329G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13537G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1024G>C
  hgvsp: ENSP00000434086.2:p.Asp342His
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2839G>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25012
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp342His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-140181814-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181814
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2831T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13545T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1032T>C
  hgvsp: ENST00000522353.2:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1032T>C
  hgvsp: ENST00000532566.2:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4877T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14337T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25011
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn344Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-140181824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181824
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181824
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1042C>A
  hgvsp: ENSP00000429808.2:p.Pro348Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2821C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14347C>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4887C>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1042C>A
  hgvsp: ENSP00000434086.2:p.Pro348Thr
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13555C>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25011
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48048
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro348Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

5-140181829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181829
    reference: chr 5
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14352G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13560G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1047G>A
  hgvsp: ENST00000532566.2:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4892G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1047G>A
  hgvsp: ENST00000522353.2:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2816G>A
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25011
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu349Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-140181839-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181839
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181838
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13572delA
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2804delA
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4904delA
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14364delA
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1059delA
  hgvsp: ENSP00000434086.2:p.Gln353HisfsTer8
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1059delA
  hgvsp: ENSP00000429808.2:p.Gln353HisfsTer8
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25010
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48051
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln353HisfsTer8
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: CA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-140181841-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181841
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181841
    reference: chr 5
allele count: 10
allele frequency: 8.236553825879252e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1059A>G
  hgvsp: ENST00000532566.2:c.1059A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1059A>G
  hgvsp: ENST00000522353.2:c.1059A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2804A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13572A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4904A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14364A>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25011
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48051
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8809
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln353Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

5-140181843-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181843
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181843
    reference: chr 5
allele count: 5
allele frequency: 4.11820907323823e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1061C>G
  hgvsp: ENSP00000434086.2:p.Ser354Ter
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4906C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14366C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1061C>G
  hgvsp: ENSP00000429808.2:p.Ser354Ter
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2802C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13574C>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25013
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48052
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser354Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-140181844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181844
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181844
    reference: chr 5
allele count: 1106
allele frequency: 9.109478470002964e-3
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13575A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1062A>G
  hgvsp: ENST00000522353.2:c.1062A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14367A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4907A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2801A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1062A>G
  hgvsp: ENST00000532566.2:c.1062A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 8.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 9.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25321
  bin: 9.75e1
  variant carriers: 672
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 7.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser354Ser
num of homozygotes: 49
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

5-140181861-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181861
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181861
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1079T>C
  hgvsp: ENSP00000429808.2:p.Leu360Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4924T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1079T>C
  hgvsp: ENSP00000434086.2:p.Leu360Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13592T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14384T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2784T>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu360Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

5-140181867-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181867
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181867
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13598A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14390A>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1085A>T
  hgvsp: ENSP00000429808.2:p.Asp362Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4930A>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1085A>T
  hgvsp: ENSP00000434086.2:p.Asp362Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2778A>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25198
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp362Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-140181880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181880
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181880
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1098C>T
  hgvsp: ENST00000522353.2:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13611C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1098C>T
  hgvsp: ENST00000532566.2:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2765C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4943C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14403C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser366Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

5-140181885-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181885
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181885
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1103T>C
  hgvsp: ENSP00000429808.2:p.Val368Ala
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14408T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13616T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2760T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1103T>C
  hgvsp: ENSP00000434086.2:p.Val368Ala
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4948T>C
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val368Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-140181887-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181887
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181887
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14410A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13618A>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1105A>G
  hgvsp: ENSP00000434086.2:p.Ile369Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4950A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2758A>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1105A>G
  hgvsp: ENSP00000429808.2:p.Ile369Val
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile369Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

5-140181891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181891
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2754C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1109C>T
  hgvsp: ENSP00000434086.2:p.Ala370Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4954C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14414C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1109C>T
  hgvsp: ENSP00000429808.2:p.Ala370Val
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13622C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala370Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-140181892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181892
    reference: chr 5
allele count: 66465
allele frequency: 5.47731280800356e-1
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1110T>C
  hgvsp: ENST00000532566.2:c.1110T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2753T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1110T>C
  hgvsp: ENST00000522353.2:c.1110T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4955T>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14415T>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13623T>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 541
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 8.75e1
  variant carriers: 1785
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 818
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.75e1
  variant carriers: 1101
genotype depth: GenotypeDepth
  all individuals: 39032
  bin: 9.75e1
  variant carriers: 38867
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 2192
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 1398
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49001
  bin: 9.75e1
  variant carriers: 47875
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 9
hgvs: p.Ala370Ala
num of homozygotes: 18562
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-140181892-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181892
    reference: chr 5
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4955T>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2753T>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1110T>G
  hgvsp: ENST00000522353.2:c.1110T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13623T>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1110T>G
  hgvsp: ENST00000532566.2:c.1110T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14415T>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39032
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49001
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala370Ala
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-140181893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181893
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181893
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14416C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2752C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4956C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1111C>T
  hgvsp: ENST00000532566.2:c.1111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1111C>T
  hgvsp: ENST00000522353.2:c.1111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13624C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu371Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

5-140181898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181898
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181898
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2747C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1116C>T
  hgvsp: ENST00000522353.2:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13629C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1116C>T
  hgvsp: ENST00000532566.2:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14421C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4961C>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47500
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile372Ile
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

5-140181900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181900
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181900
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2745G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4963G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1118G>A
  hgvsp: ENSP00000434086.2:p.Ser373Asn
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14423G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13631G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1118G>A
  hgvsp: ENSP00000429808.2:p.Ser373Asn
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47500
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser373Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-140181901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181901
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181901
    reference: chr 5
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14424C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13632C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1119C>T
  hgvsp: ENST00000522353.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1119C>T
  hgvsp: ENST00000532566.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4964C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2744C>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser373Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-140181902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181902
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181902
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14425G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4965G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1120G>A
  hgvsp: ENSP00000429808.2:p.Val374Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2743G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1120G>A
  hgvsp: ENSP00000434086.2:p.Val374Met
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13633G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val374Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-140181914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181914
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181914
    reference: chr 5
allele count: 10
allele frequency: 8.23641814647646e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2731G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4977G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1132G>A
  hgvsp: ENSP00000434086.2:p.Asp378Asn
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1132G>A
  hgvsp: ENSP00000429808.2:p.Asp378Asn
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13645G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14437G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp378Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-140181929-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181929
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181929
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4992G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2716G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14452G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1147G>A
  hgvsp: ENSP00000434086.2:p.Gly383Arg
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1147G>A
  hgvsp: ENSP00000429808.2:p.Gly383Arg
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13660G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly383Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

5-140181934-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181934
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181934
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2711G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13665G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+4997G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14457G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1152G>T
  hgvsp: ENSP00000434086.2:p.Gln384His
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1152G>T
  hgvsp: ENSP00000429808.2:p.Gln384His
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47497
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln384His
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

5-140181942-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181942
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181942
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13673G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1160G>T
  hgvsp: ENSP00000434086.2:p.Cys387Phe
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14465G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1160G>T
  hgvsp: ENSP00000429808.2:p.Cys387Phe
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2703G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5005G>T
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys387Phe
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

5-140181946-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181946
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181946
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1164G>C
  hgvsp: ENST00000532566.2:c.1164G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2699G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1164G>C
  hgvsp: ENST00000522353.2:c.1164G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13677G>C
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5009G>C
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14469G>C
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser388Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

5-140181952-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181952
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181952
    reference: chr 5
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1170G>A
  hgvsp: ENST00000522353.2:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2693G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5015G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13683G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1170G>A
  hgvsp: ENST00000532566.2:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14475G>A
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35484
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr390Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

5-140181952-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181952
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181952
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1170G>T
  hgvsp: ENST00000522353.2:c.1170G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5015G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2693G>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1170G>T
  hgvsp: ENST00000532566.2:c.1170G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13683G>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14475G>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr390Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

5-140181953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181953
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181953
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1171C>T
  hgvsp: ENSP00000434086.2:p.Pro391Ser
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2692C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5016C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13684C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14476C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1171C>T
  hgvsp: ENSP00000429808.2:p.Pro391Ser
  variant of: http://identifiers.org/hgnc/8669
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9236
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro391Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-140181954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181954
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181954
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13685C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1172C>T
  hgvsp: ENSP00000429808.2:p.Pro391Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1172C>T
  hgvsp: ENSP00000434086.2:p.Pro391Leu
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5017C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2691C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14477C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9238
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro391Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

5-140181959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181959
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181959
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14482G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1177G>A
  hgvsp: ENSP00000429808.2:p.Val393Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13690G>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5022G>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1177G>A
  hgvsp: ENSP00000434086.2:p.Val393Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2686G>A
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val393Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-140181964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181964
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5027C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14487C>T
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1182C>T
  hgvsp: ENST00000522353.2:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2681C>T
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1182C>T
  hgvsp: ENST00000532566.2:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13695C>T
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47493
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro394Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

5-140181964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181964
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13695C>G
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1182C>G
  hgvsp: ENST00000522353.2:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5027C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1182C>G
  hgvsp: ENST00000532566.2:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2681C>G
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14487C>G
  variant of: http://identifiers.org/hgnc/8663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro394Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-140181965-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140181965
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140181965
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000431748
  ensembl transcript: ENST00000526136
  gene symbol: PCDHA2
  hgvsc: ENST00000526136.1:c.2388+5028T>A
  variant of: http://identifiers.org/hgnc/8668
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000429808
  ensembl transcript: ENST00000522353
  gene symbol: PCDHA3
  hgvsc: ENST00000522353.2:c.1183T>A
  hgvsp: ENSP00000429808.2:p.Phe395Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000378129
  ensembl transcript: ENST00000394633
  gene symbol: PCDHA1
  hgvsc: ENST00000394633.3:c.1602+14488T>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000255408
  ensembl protein: ENSP00000434086
  ensembl transcript: ENST00000532566
  gene symbol: PCDHA3
  hgvsc: ENST00000532566.2:c.1183T>A
  hgvsp: ENSP00000434086.2:p.Phe395Ile
  variant of: http://identifiers.org/hgnc/8669
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204970
  ensembl protein: ENSP00000420840
  ensembl transcript: ENST00000504120
  gene symbol: PCDHA1
  hgvsc: ENST00000504120.2:c.2394+13696T>A
  variant of: http://identifiers.org/hgnc/8663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204969
  ensembl protein: ENSP00000430584
  ensembl transcript: ENST00000520672
  gene symbol: PCDHA2
  hgvsc: ENST00000520672.2:c.2389-2680T>A
  variant of: http://identifiers.org/hgnc/8668
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe395Ile
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.646273e6

QD
type: SiteQuality
SIO_000300: 1.501e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

FS
type: SiteQuality
SIO_000300: 1.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.646706e6

QD
type: SiteQuality
SIO_000300: 1.702e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 2.235e0

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34254
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.686e1

VQSLOD
type: SiteQuality
SIO_000300: -9.785e-1

FS
type: SiteQuality
SIO_000300: 3.799e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 2.646897e6

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 8.75e1
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GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.445e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.263e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.647513e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.263e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.647513e6

FS
type: SiteQuality
SIO_000300: 4.445e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 2471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.021174205967276e-3
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 2.648732e6

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1885
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variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.114e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.11e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

DP
type: SiteQuality
SIO_000300: 2.648479e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997871511227029e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.001e1

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e0

DP
type: SiteQuality
SIO_000300: 2.648712e6

MQ
type: SiteQuality
SIO_000300: 5.918e1

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.799e0

QD
type: SiteQuality
SIO_000300: 1.175e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 2.650441e6

GenotypeQuality
all individuals: 2477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 7.25e1
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GenotypeQuality
all individuals: 34273
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 3.005085529357374e-3
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.650441e6

FS
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.799e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 10323
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variant carriers: 0

GenotypeQuality
all individuals: 2879
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 38649
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variant carriers: 11939

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 1898
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variant carriers: 0

Other
type: Population
allele count: 99
allele frequency: 1.092715231788079e-1
allele num: 906
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 1240
allele frequency: 1.874811006954944e-1
allele num: 6614
num of homozygotes: 123

South Asian
type: Population
allele count: 1366
allele frequency: 8.273773470623864e-2
allele num: 16510
num of homozygotes: 74

African
type: Population
allele count: 717
allele frequency: 6.896883416698731e-2
allele num: 10396
num of homozygotes: 21

Latino
type: Population
allele count: 509
allele frequency: 4.397788145844134e-2
allele num: 11574
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 8202
allele frequency: 1.229463964504137e-1
allele num: 66712
num of homozygotes: 554

East Asian
type: Population
allele count: 623
allele frequency: 7.202312138728324e-2
allele num: 8650
num of homozygotes: 23

DP
type: SiteQuality
SIO_000300: 3.585447e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e0

QD
type: SiteQuality
SIO_000300: 1.584e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 3621
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GenotypeQuality
all individuals: 2137
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.002786e6

QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.555e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 33763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.36e-1

DP
type: SiteQuality
SIO_000300: 3.002748e6

FS
type: SiteQuality
SIO_000300: 1.526e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.45e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.119e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13822
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

QD
type: SiteQuality
SIO_000300: 2.276e1

VQSLOD
type: SiteQuality
SIO_000300: -2.346e0

FS
type: SiteQuality
SIO_000300: 1.416e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

DP
type: SiteQuality
SIO_000300: 3.003473e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
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variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.665e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.41e1

DP
type: SiteQuality
SIO_000300: 3.004421e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885725278953444e-4
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.665e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 3.004421e6

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2059
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.526e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

DP
type: SiteQuality
SIO_000300: 3.005051e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
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variant carriers: 0

GenotypeQuality
all individuals: 33777
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13815
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variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.526e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

DP
type: SiteQuality
SIO_000300: 3.005051e6

GenotypeQuality
all individuals: 1400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.018e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.005557e6

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.304e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.17e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.566e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.005866e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.79807605861728e-4
allele num: 66738
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.007329e6

QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2068
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GenotypeQuality
all individuals: 1747
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.967e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.907e0

DP
type: SiteQuality
SIO_000300: 3.00743e6

QD
type: SiteQuality
SIO_000300: 1.749e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33794
bin: 9.75e1
variant carriers: 12

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.64823638706584e-4
allele num: 66738
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

QD
type: SiteQuality
SIO_000300: 1.627e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 3.008685e6

GenotypeQuality
all individuals: 8661
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 18

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 48599
bin: 9.75e1
variant carriers: 46712

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 18

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 20

East Asian
type: Population
allele count: 4582
allele frequency: 5.308155699721965e-1
allele num: 8632
num of homozygotes: 1217

Other
type: Population
allele count: 501
allele frequency: 5.517621145374449e-1
allele num: 908
num of homozygotes: 135

European (Non-Finnish)
type: Population
allele count: 35140
allele frequency: 5.26662869818051e-1
allele num: 66722
num of homozygotes: 9337

European (Finnish)
type: Population
allele count: 3047
allele frequency: 4.608287961282517e-1
allele num: 6612
num of homozygotes: 720

African
type: Population
allele count: 5031
allele frequency: 4.8375e-1
allele num: 10400
num of homozygotes: 1196

South Asian
type: Population
allele count: 8905
allele frequency: 5.393700787401575e-1
allele num: 16510
num of homozygotes: 2448

Latino
type: Population
allele count: 6491
allele frequency: 5.610198789974071e-1
allele num: 11570
num of homozygotes: 1815

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 6.227341e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 2.34e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48062
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variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.076e0

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 5.155693e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.527e1

FS
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.619e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.645e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.906e1

DP
type: SiteQuality
SIO_000300: 5.155477e6

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8765
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 5.155528e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.452e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
all individuals: 48059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.513e0

FS
type: SiteQuality
SIO_000300: 1.1204e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -4.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.894e0

DP
type: SiteQuality
SIO_000300: 5.155618e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48062
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.774e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 5.156554e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

GenotypeQuality
all individuals: 1815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.446312445683119e-4
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 5.156554e6

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.246e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

FS
type: SiteQuality
SIO_000300: 2.026e0

QD
type: SiteQuality
SIO_000300: 1.224e1

DP
type: SiteQuality
SIO_000300: 5.154931e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

GenotypeQuality
all individuals: 562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.154962e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 4.968e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele num: 10406
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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DP
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MQRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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SIO_000300: -1.508e0

ReadPosRankSum
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SIO_000300: -6.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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Other
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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QD
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SIO_000300: 1.344e1

FS
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8654
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African
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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Other
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQRankSum
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Latino
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African
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South Asian
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East Asian
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Other
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European (Finnish)
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MQRankSum
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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South Asian
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European (Finnish)
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African
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Other
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East Asian
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European (Non-Finnish)
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DP
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FS
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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Latino
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South Asian
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

MQ
type: SiteQuality
SIO_000300: 6.03e1

FS
type: SiteQuality
SIO_000300: 1.799e0

DP
type: SiteQuality
SIO_000300: 5.154207e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.683e1

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.450581395348837e-4
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.532e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

DP
type: SiteQuality
SIO_000300: 5.154424e6

FS
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 5.154558e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48217
bin: 9.75e1
variant carriers: 1056

Latino
type: Population
allele count: 58
allele frequency: 5.009500777336327e-3
allele num: 11578
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.947857356907402e-4
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 1031
allele frequency: 9.907745531424178e-2
allele num: 10406
num of homozygotes: 48

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.66e-2

QD
type: SiteQuality
SIO_000300: 1.52e1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 5.18855e6

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.905e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 5.175573e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.126e-1

FS
type: SiteQuality
SIO_000300: 4.383e0

QD
type: SiteQuality
SIO_000300: 1.5e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.36e-1

GenotypeQuality
all individuals: 1799
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48207
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.757e0

FS
type: SiteQuality
SIO_000300: 4.846e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 5.175576e6

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

FS
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.021e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 5.175464e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8742
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.139999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e0

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

DP
type: SiteQuality
SIO_000300: 5.175468e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.293e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.175493e6

MQRankSum
type: SiteQuality
SIO_000300: -1.196e0

FS
type: SiteQuality
SIO_000300: 1.007e0

QD
type: SiteQuality
SIO_000300: 9.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.997e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -4.473e-1

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48206
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.676e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.332e0

VQSLOD
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.238e0

DP
type: SiteQuality
SIO_000300: 5.175515e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8560
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 443
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 4

African
type: Population
allele count: 7606
allele frequency: 7.310649750096117e-1
allele num: 10404
num of homozygotes: 2786

East Asian
type: Population
allele count: 4583
allele frequency: 5.314239332096475e-1
allele num: 8624
num of homozygotes: 1217

South Asian
type: Population
allele count: 8909
allele frequency: 5.39546996124031e-1
allele num: 16512
num of homozygotes: 2451

Latino
type: Population
allele count: 6647
allele frequency: 5.746023513139695e-1
allele num: 11568
num of homozygotes: 1900

Other
type: Population
allele count: 510
allele frequency: 5.616740088105727e-1
allele num: 908
num of homozygotes: 140

European (Non-Finnish)
type: Population
allele count: 35163
allele frequency: 5.270075837055244e-1
allele num: 66722
num of homozygotes: 9348

European (Finnish)
type: Population
allele count: 3047
allele frequency: 4.611077481840194e-1
allele num: 6608
num of homozygotes: 720

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

DP
type: SiteQuality
SIO_000300: 6.363671e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 2.359e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
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GenotypeQuality
all individuals: 443
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 6.363671e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 2.359e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47500
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.071e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.704e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.289e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 1.723e1

DP
type: SiteQuality
SIO_000300: 5.90482e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 217
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.904779e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.643e0

FS
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.5e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9227
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

DP
type: SiteQuality
SIO_000300: 5.904786e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.269e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9224
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.904805e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.225e0

FS
type: SiteQuality
SIO_000300: 2.0569e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.61e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 392
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
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MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.818e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 10
allele frequency: 8.637070305752289e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQ
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele num: 11578
num of homozygotes: 0

African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.535e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
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SIO_000300: 5.904815e6

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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FS
type: SiteQuality
SIO_000300: 2.309e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.809e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.131e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 1.632e1

DP
type: SiteQuality
SIO_000300: 5.904889e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

FS
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

DP
type: SiteQuality
SIO_000300: 5.904889e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: -1.131e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 5.904728e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.427e0

BaseQRankSum
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SIO_000300: -2.099e0

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

QD
type: SiteQuality
SIO_000300: 4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 1.161e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.90465e6

VQSLOD
type: SiteQuality
SIO_000300: -2.355e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: -4.741e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 2.631e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
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SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 5.904655e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 5.904732e6

MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.897e1

VQSLOD
type: SiteQuality
SIO_000300: -2.492e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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DP
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.897e1

ClippingRankSum
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SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4